Merge branch 'master' into vectorImage

[clitk.git] / tools / clitkImageStatistics.ggo

diff --git a/tools/clitkImageStatistics.ggo b/tools/clitkImageStatistics.ggo
old mode 100755 (executable)
new mode 100644 (file)
index efc044d..7e28e42
--- a/tools/clitkImageStatistics.ggo
+++ b/tools/clitkImageStatistics.ggo
@@ -1,15 +1,20 @@
 #File clitkImageStatistics.ggo
-Package "clitkImageStatistics"
-version "1.0"
-purpose "Compute statistics on an image, or on part of an image specified by a mask and label(s)"
+package "clitkImageStatistics"
+version "2.0"
+#This tool supports multiple images on the input, or even 4D, but all images must be of the same type and dimensions. 
+purpose "Compute statistics on an image, or on part of an image specified by a mask and label(s). The tool also supports multichannel images, which is useful, e.g., for vector fields. All channels are processed (separately) by default, but only one channel may be chosen."
 
 option "config"                -       "Config file"                     string        no
 option "verbose"       v       "Verbose"                         flag          off
 
-option "input"         i       "Input image filename"            string        yes
+option "input"         i       "Input image filename"            string        no multiple
+option "channel"    c "Image channel to be used in statistics (-1 to process all channels)"  int no default="-1"
 option "mask"          m       "Mask image filename (uchar)"             string        no
 option "label"         l       "Label(s) in the mask image to consider"        int     no      multiple        default="1"
 option "histogram"     -       "Compute histogram, allows median calculation"  string  no
+option "dvhistogram" - "Compute dose volume histogram" string  no
 option "bins"          -       "Number of histogram bins"                      int     no      default="100"
 option "lower"         -       "Lower histogram bound" double  no default="-1000"      
 option "upper"         -       "Upper histogram bound" double  no default="1000"               
+
+option "allow_resize"          r       "Resize mask if different from input"                     flag          off