Add code to write dicom sequence tag in gateSimulation2Dicom

[clitk.git] / tools / clitkImageStatisticsGenericFilter.txx

diff --git a/tools/clitkImageStatisticsGenericFilter.txx b/tools/clitkImageStatisticsGenericFilter.txx
index 4b940ffb41f0c66ad026e2cfab68343be54630db..b3eff93ce1082304554c03f1a71589a41d2fa059 100644 (file)
--- a/tools/clitkImageStatisticsGenericFilter.txx
+++ b/tools/clitkImageStatisticsGenericFilter.txx
@@ -156,7 +156,7 @@ namespace clitk
 
           }
           else {
-            std::cerr << "Mask image has a different size/spacing than input. Abort" << std::endl;
+            std::cerr << "Mask image has a different size/spacing than input. Abort. (Use option to resize)" << std::endl;
             exit(-1);
           }
         }
@@ -166,9 +166,11 @@ namespace clitk
     }
     else {
       labelImage=LabelImageType::New();
+      labelImage->SetDirection(input->GetDirection());
       labelImage->SetRegions(input->GetLargestPossibleRegion());
       labelImage->SetOrigin(input->GetOrigin());
       labelImage->SetSpacing(input->GetSpacing());
+      labelImage->SetDirection(input->GetDirection());
       labelImage->Allocate();
       labelImage->FillBuffer(m_ArgsInfo.label_arg[0]);
     }
@@ -212,7 +214,7 @@ namespace clitk
 
         std::cout<<std::endl;
         if (m_Verbose) std::cout<<"-------------"<<std::endl;
-        if (m_Verbose) std::cout<<"| Label: "<<label<<"  |"<<std::endl;
+        if (m_Verbose) std::cout<<"| Label: "<< (int) label<<"  |"<<std::endl;
         if (m_Verbose) std::cout<<"-------------"<<std::endl;
 
         // Histograms
@@ -245,6 +247,8 @@ namespace clitk
         std::cout<<statisticsFilter->GetMaximum(label)<<std::endl;
         if (m_Verbose) std::cout<<"Sum: ";
         std::cout<<statisticsFilter->GetSum(label)<<std::endl;
+        if (m_Verbose) std::cout<<"Volume (cc): ";
+        std::cout<<statisticsFilter->GetCount(label)*spacing_cc<<std::endl;
         if (m_Verbose) std::cout<<"Bounding box: ";
         for(unsigned int i =0; i <statisticsFilter->GetBoundingBox(label).size(); i++)
             std::cout<<statisticsFilter->GetBoundingBox(label)[i]<<" ";
@@ -303,13 +307,7 @@ namespace clitk
               double percentCumulativeVolume =(cumulativeVolume*100)/(statisticsFilter->GetCount(label)) ;
               double ccCumulativeVolume = (totalVolumeCC -((popCumulativeVolume + (dvhistogram->GetFrequency(i)))*spacing_cc));
               double percentDiffVolume = dvhistogram->GetFrequency(i)*100/(statisticsFilter->GetCount(label));
-              if(i == 0)
-              {
-                 std::cout<<dvhistogram->GetBinMax(0,i)<<"\t  "<<dvhistogram->GetFrequency(i)<<"\t  "<<percentDiffVolume<<"\t "<<((dvhistogram->GetFrequency(i))*spacing_cc)<<"\t "<<cumulativeVolume<<"\t  "<<percentCumulativeVolume<<"\t  "<<ccCumulativeVolume<<"\t "<<std::endl;
-              }else
-              {
-                 std::cout<<dvhistogram->GetBinMax(0,i)<<"\t  "<<dvhistogram->GetFrequency(i)<<"\t  "<<percentDiffVolume<<"\t "<<((dvhistogram->GetFrequency(i))*spacing_cc)<<"\t "<<"\t "<<cumulativeVolume<<"\t  "<<percentCumulativeVolume<<"\t  "<<ccCumulativeVolume<<"\t "<<std::endl;
-              }
+              std::cout<<dvhistogram->GetBinMax(0,i)<<"\t  "<<dvhistogram->GetFrequency(i)<<"\t  "<<percentDiffVolume<<"\t "<<((dvhistogram->GetFrequency(i))*spacing_cc)<<"\t "<<"\t "<<cumulativeVolume<<"\t  "<<percentCumulativeVolume<<"\t  "<<ccCumulativeVolume<<"\t "<<std::endl;
             }
 
             // Add to the file
@@ -337,13 +335,7 @@ namespace clitk
                double percentCumulativeVolume =(cumulativeVolume*100)/(statisticsFilter->GetCount(label));
                double ccCumulativeVolume = (totalVolumeCC -((popCumulativeVolume + (dvhistogram->GetFrequency(i)))*spacing_cc));
                double percentDiffVolume = ((dvhistogram->GetFrequency(i))*100)/(statisticsFilter->GetCount(label));
-               if(i == 0)
-               {
-                 dvhistogramFile<<dvhistogram->GetBinMax(0,i)<<"\t  "<<dvhistogram->GetFrequency(i)<<"\t  "<<percentDiffVolume<<"\t "<<((dvhistogram->GetFrequency(i))*spacing_cc)<<"\t "<<cumulativeVolume<<"\t "<<percentCumulativeVolume<<"\t  "<<ccCumulativeVolume<<std::endl;
-               }else
-               {
-                 dvhistogramFile<<dvhistogram->GetBinMax(0,i)<<"\t  "<<dvhistogram->GetFrequency(i)<<"\t  "<<percentDiffVolume<<"\t "<<((dvhistogram->GetFrequency(i))*spacing_cc)<<"\t "<<cumulativeVolume<<"\t "<<percentCumulativeVolume<<"\t  "<<ccCumulativeVolume<<std::endl;
-               }
+               dvhistogramFile<<dvhistogram->GetBinMax(0,i)<<"\t  "<<dvhistogram->GetFrequency(i)<<"\t  "<<percentDiffVolume<<"\t "<<((dvhistogram->GetFrequency(i))*spacing_cc)<<"\t "<<cumulativeVolume<<"\t "<<percentCumulativeVolume<<"\t  "<<ccCumulativeVolume<<std::endl;
            }
         }
       }