Correct roi name into DicomRTStruct

[clitk.git] / tools / clitkNormalizeImageFilterGenericFilter.txx

diff --git a/tools/clitkNormalizeImageFilterGenericFilter.txx b/tools/clitkNormalizeImageFilterGenericFilter.txx
index 99a43a464ad8157367caf9f5ed7e301b0736ac64..ea8773334d2307d99953eab8c0a133690c215bc8 100644 (file)
--- a/tools/clitkNormalizeImageFilterGenericFilter.txx
+++ b/tools/clitkNormalizeImageFilterGenericFilter.txx
@@ -94,7 +94,7 @@ namespace clitk
         // Reading input
         typename InputImageType::Pointer input = this->template GetInput<InputImageType>(0);
 
-        typename MaskImageType::Pointer mask = NULL;
+        typename MaskImageType::Pointer mask = ITK_NULLPTR;
         if(mArgsInfo.mask_given) {
             mask = this->template GetInput<MaskImageType>(1);
         }
@@ -144,13 +144,28 @@ namespace clitk
         ito.GoToBegin();
         itm.GoToBegin();
 
+        double total = 0.0;
         while (!ito.IsAtEnd()) {
+          if(itm.Get() == 1) {
+            ito.Set(((float) it.Get() - minImg)/(maxImg-minImg));
+            total += ito.Get();
+          }
+          ++it;
+          ++ito;
+          ++itm;
+        }
+
+        // Normalisation wrt total ?
+        if (mArgsInfo.total_normalisation_flag) {
+          ito.GoToBegin();
+          itm.GoToBegin();
+          while (!ito.IsAtEnd()) {
             if(itm.Get() == 1) {
-                ito.Set(((float) it.Get() - minImg)/(maxImg-minImg));
+              ito.Set(ito.Get()/total);
             }
-            ++it;
             ++ito;
             ++itm;
+          }
         }
         //
         //