First version of the builder of relpos database

[clitk.git] / tools / clitkRelativePosition.ggo

diff --git a/tools/clitkRelativePosition.ggo b/tools/clitkRelativePosition.ggo
index 4f65fe23c96a4a4c90d07a7501e520c615fce820..bc3f5111b8a3e789d22480497bb35e0a15ed8b0d 100644 (file)
--- a/tools/clitkRelativePosition.ggo
+++ b/tools/clitkRelativePosition.ggo
@@ -8,7 +8,7 @@ option "config"         -       "Config file"                     string        no
 option "verbose"       v       "Verbose"                         flag          off
 option "verboseStep"    -       "Verbose each step"              flag          off
 option "writeStep"      w       "Write image at each step"       flag          off
-option "verboseOption"  -       "Display options values"          flag          off
+option "verboseOptions" -       "Display options values"          flag          off
 option "imagetypes"     -       "Display allowed image types"     flag          off
 
 section "Input/Output"
@@ -17,19 +17,20 @@ option "object"             j       "Input mask object filename"      string        yes
 option "output"        o       "Output image filename"           string        yes
 
 section "Main options"
-option "orientation"           r       "L R A P I S (LeftRightAntPostInfSup)"          string no       default="L"
+option "orientation"           r       "L R A P I S (LeftRightAntPostInfSup)"          string no multiple      default="L"
 option "angle1"        a       "Angle 1 (deg)"                    double       no      default="0"
 option "angle2"        b       "Angle 2 (deg)"                    double       no      default="0"
-option "spacing"       s       "Resample before (faster)"         double       no
+option "spacing"       s       "Resample before (faster) (-1 if not resampling"         double         default = "-1" no
 option "threshold"     t       "Fuzzy threshold"                  double       no default="0.6"
-option "not"            n       "Not flag : inverse of the orientation"     flag   off
+option "inverse"        n       "Not flag : inverse of the orientation"     flag   off
+option "doNotRemoveObject"  -   "if flag is on, do not remove the object"   flag   off
 option "noAutoCrop"     c       "No auto crop at the end if set"            flag   off
+option "combineWithOr"  -       "Combine relpos map and support with OR"    flag   off
 
 section "Slice by slice processing"
 option "sliceBySlice"   -       "Slice by slice relative position"          flag   off
 option "direction"     d       "If SbS, indicate the slice direction"      int    no default="2"
+option "uniqueCCL"      u       "Keep only one CC in each slice"            flag   off
+option "uniqueObjectCCL"      -       "Keep only one CC in each object slice"            flag   off
    
 
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-
-