dicom structure in cmd line

[clitk.git] / tools / clitkRelativePositionAnalyzer.ggo

diff --git a/tools/clitkRelativePositionAnalyzer.ggo b/tools/clitkRelativePositionAnalyzer.ggo
index c2f4d6f1dcde5db762251b3389cce9ae0e7c25aa..cf0feb177341e5dff25aadb476bdc8637b18e04a 100644 (file)
--- a/tools/clitkRelativePositionAnalyzer.ggo
+++ b/tools/clitkRelativePositionAnalyzer.ggo
@@ -12,8 +12,20 @@ section "Input/Output"
 option "support"       i       "Input mask support"      string        yes
 option "object"                j       "Input mask object"       string        yes
 option "target"                t       "Input mask target"       string        yes
-option "output"        o       "Output image "           string        yes
+option "output"        o       "Output image "                         string yes
 
+section "Options for building the relative positions"
+option "bins"           -       "Number of histo bins for fuzzy map"      int default="100" no
+option "tol"            -       "Target area loss tolerance (|0-1])"      double default="0.01" no
+
+option "angle1"        a       "Angle 1 (deg)"                    double       no      default="0"
+option "angle2"        b       "Angle 2 (deg)"                    double       no      default="0"
+option "inverse"        n       "Not flag : inverse of the orientation"     flag   off
+
+
+section "Compute some statistic on afdb"
+option "afdb"           -       "Input Anatomical Feature DB"           string no multiple
+option "afdb_path"      -       "Path to search image in afdb"          string no multiple
+option "station"       -       "Station name"                          string no
 
-option "afdb" a "Input Anatomical Feature DB" string no