Added clitkAffineRegistration from Jef's file. Also does translations only and rigid...

[clitk.git] / tools / clitkRigidRegistration.cxx

diff --git a/tools/clitkRigidRegistration.cxx b/tools/clitkRigidRegistration.cxx
deleted file mode 100644 (file)
index 1db3e75..0000000
--- a/tools/clitkRigidRegistration.cxx
+++ /dev/null
@@ -1,109 +0,0 @@
-/*=========================================================================
-  Program:   vv                     http://www.creatis.insa-lyon.fr/rio/vv
-
-  Authors belong to:
-  - University of LYON              http://www.universite-lyon.fr/
-  - Léon Bérard cancer center       http://oncora1.lyon.fnclcc.fr
-  - CREATIS CNRS laboratory         http://www.creatis.insa-lyon.fr
-
-  This software is distributed WITHOUT ANY WARRANTY; without even
-  the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR
-  PURPOSE.  See the copyright notices for more information.
-
-  It is distributed under dual licence
-
-  - BSD        See included LICENSE.txt file
-  - CeCILL-B   http://www.cecill.info/licences/Licence_CeCILL-B_V1-en.html
-======================================================================-====*/
-/**
- -------------------------------------------------
- * @file   clitkRigidRegistration.cxx
- * @author Jef Vandemeulebroucke <jef.Vandemeulebroucke@creatis.insa-lyon.fr>
- * @date   14 August 2007
- *
- * @brief Perform a rigid registration between 2 images
- *
- -------------------------------------------------*/
-
-
-// clitk include
-#include "clitkIO.h"
-#include "clitkImageCommon.h"
-#include "clitkRigidRegistration_ggo.h"
-#include "clitkRigidRegistrationGenericFilter.h"
-
-using namespace clitk;
-using namespace std;
-
-
-int main( int argc, char *argv[] )
-{
-  //init command line and check options
-  GGO(args_info);
-  CLITK_INIT;
-
-  //---------------------------------------------------------------------------
-  //Set all the options passed through the commandline
-
-  RigidRegistrationGenericFilter rigidRegistration;
-
-  rigidRegistration.SetVerbose(args_info.verbose_flag);
-  rigidRegistration.SetGradient(args_info.gradient_flag);
-  rigidRegistration.SetZeroOrigin(args_info.zero_origin_flag);
-
-//Input
-  rigidRegistration.SetFixedImageName(args_info.reference_arg);
-  rigidRegistration.SetMovingImageName(args_info.object_arg);
-  rigidRegistration.SetFixedImageMaskGiven(args_info.mask_given);
-  if (args_info.mask_given)   rigidRegistration.SetFixedImageMaskName(args_info.mask_arg);
-
-  //Output
-  rigidRegistration.SetOutputGiven(args_info.output_given);
-  if (args_info.output_given)  rigidRegistration.SetOutputName(args_info.output_arg);
-  rigidRegistration.SetCheckerAfterGiven(args_info.checker_after_given);
-  if (args_info.checker_after_given)  rigidRegistration.SetCheckerAfterName(args_info.checker_after_arg);
-  rigidRegistration.SetCheckerBeforeGiven(args_info.checker_before_given);
-  if (args_info.checker_before_given)  rigidRegistration.SetCheckerBeforeName(args_info.checker_before_arg);
-  rigidRegistration.SetBeforeGiven(args_info.before_given);
-  if (args_info.before_given)  rigidRegistration.SetBeforeName(args_info.before_arg);
-  rigidRegistration.SetAfterGiven(args_info.after_given);
-  if (args_info.after_given)  rigidRegistration.SetAfterName(args_info.after_arg);
-  rigidRegistration.SetMatrixGiven(args_info.matrix_given);
-  if (args_info.matrix_given)  rigidRegistration.SetMatrixName(args_info.matrix_arg);
-
-  //Interp
-  rigidRegistration.SetInterpType(args_info.interp_arg);
-
-  //Transform
-  rigidRegistration.SetRotX(args_info.rotX_arg);
-  rigidRegistration.SetRotY(args_info.rotY_arg);
-  rigidRegistration.SetRotZ(args_info.rotZ_arg);
-  rigidRegistration.SetTransX(args_info.transX_arg);
-  rigidRegistration.SetTransY(args_info.transY_arg);
-  rigidRegistration.SetTransZ(args_info.transZ_arg);
-
-  //Optimizer
-  rigidRegistration.SetLevels(args_info.levels_arg);
-  rigidRegistration.SetIstep(args_info.Istep_arg);
-  rigidRegistration.SetFstep(args_info.Fstep_arg);
-  rigidRegistration.SetRelax(args_info.relax_arg);
-  rigidRegistration.SetInc(args_info.inc_arg);
-  rigidRegistration.SetDec(args_info.dec_arg);
-  rigidRegistration.SetIter(args_info.iter_arg);
-  rigidRegistration.SetRweight(args_info.Rweight_arg);
-  rigidRegistration.SetTweight(args_info.Tweight_arg);
-
-  //Metric
-  rigidRegistration.SetMetricType(args_info.metric_arg);
-  rigidRegistration.SetSamples(args_info.samples_arg);
-  rigidRegistration.SetBins(args_info.bins_arg);
-  rigidRegistration.SetRandom(args_info.random_flag);
-  rigidRegistration.SetStdDev(args_info.stdDev_arg);
-
-  //Preprocessing
-  rigidRegistration.SetBlur(args_info.blur_arg);
-  rigidRegistration.SetNormalize(args_info.normalize_flag);
-
-  rigidRegistration.Update();
-
-}