/*=========================================================================
Program: vv http://www.creatis.insa-lyon.fr/rio/vv
- Authors belong to:
+ Authors belong to:
- University of LYON http://www.universite-lyon.fr/
- - Léon Bérard cancer center http://oncora1.lyon.fnclcc.fr
+ - Léon Bérard cancer center http://www.centreleonberard.fr
- CREATIS CNRS laboratory http://www.creatis.insa-lyon.fr
This software is distributed WITHOUT ANY WARRANTY; without even
- BSD See included LICENSE.txt file
- CeCILL-B http://www.cecill.info/licences/Licence_CeCILL-B_V1-en.html
-======================================================================-====*/
+===========================================================================**/
#ifndef clitkSetBackgroundGenericFilter_txx
#define clitkSetBackgroundGenericFilter_txx
-/* =================================================
- * @file clitkSetBackgroundGenericFilter.txx
- * @author
- * @date
- *
- * @brief
- *
- ===================================================*/
-
-
namespace clitk
{
- //-------------------------------------------------------------------
- // Update with the number of dimensions
- //-------------------------------------------------------------------
- template<unsigned int Dimension>
- void
- SetBackgroundGenericFilter::UpdateWithDim(std::string PixelType)
- {
- if (m_Verbose) std::cout << "Image was detected to be "<<Dimension<<"D and "<< PixelType<<"..."<<std::endl;
-
- if(PixelType == "short"){
- if (m_Verbose) std::cout << "Launching filter in "<< Dimension <<"D and signed short..." << std::endl;
- UpdateWithDimAndPixelType<Dimension, signed short>();
- }
- // else if(PixelType == "unsigned_short"){
- // if (m_Verbose) std::cout << "Launching filter in "<< Dimension <<"D and unsigned_short..." << std::endl;
- // UpdateWithDimAndPixelType<Dimension, unsigned short>();
- // }
-
- else if (PixelType == "unsigned_char"){
- if (m_Verbose) std::cout << "Launching filter in "<< Dimension <<"D and unsigned_char..." << std::endl;
- UpdateWithDimAndPixelType<Dimension, unsigned char>();
- }
-
- // else if (PixelType == "char"){
- // if (m_Verbose) std::cout << "Launching filter in "<< Dimension <<"D and signed_char..." << std::endl;
- // UpdateWithDimAndPixelType<Dimension, signed char>();
- // }
- else {
- if (m_Verbose) std::cout << "Launching filter in "<< Dimension <<"D and float..." << std::endl;
- UpdateWithDimAndPixelType<Dimension, float>();
- }
- }
+//-------------------------------------------------------------------
+// Update with the number of dimensions
+//-------------------------------------------------------------------
+template<unsigned int Dimension>
+void
+SetBackgroundGenericFilter::UpdateWithDim(std::string PixelType)
+{
+ if (m_Verbose) std::cout << "Image was detected to be "<<Dimension<<"D and "<< PixelType<<"..."<<std::endl;
+ if(PixelType == "short") {
+ if (m_Verbose) std::cout << "Launching filter in "<< Dimension <<"D and signed short..." << std::endl;
+ UpdateWithDimAndPixelType<Dimension, signed short>();
+ }
+ // else if(PixelType == "unsigned_short"){
+ // if (m_Verbose) std::cout << "Launching filter in "<< Dimension <<"D and unsigned_short..." << std::endl;
+ // UpdateWithDimAndPixelType<Dimension, unsigned short>();
+ // }
+
+ else if (PixelType == "unsigned_char") {
+ if (m_Verbose) std::cout << "Launching filter in "<< Dimension <<"D and unsigned_char..." << std::endl;
+ UpdateWithDimAndPixelType<Dimension, unsigned char>();
+ }
- //-------------------------------------------------------------------
- // Update with the number of dimensions and the pixeltype
- //-------------------------------------------------------------------
- template <unsigned int Dimension, class PixelType>
- void
- SetBackgroundGenericFilter::UpdateWithDimAndPixelType()
- {
+ // else if (PixelType == "char"){
+ // if (m_Verbose) std::cout << "Launching filter in "<< Dimension <<"D and signed_char..." << std::endl;
+ // UpdateWithDimAndPixelType<Dimension, signed char>();
+ // }
+ else {
+ if (m_Verbose) std::cout << "Launching filter in "<< Dimension <<"D and float..." << std::endl;
+ UpdateWithDimAndPixelType<Dimension, float>();
+ }
+}
+
+//-------------------------------------------------------------------
+// Update with the number of dimensions and the pixeltype
+//-------------------------------------------------------------------
+template <unsigned int Dimension, class PixelType>
+void
+SetBackgroundGenericFilter::UpdateWithDimAndPixelType()
+{
// ImageTypes
-
typedef itk::Image<PixelType, Dimension> InputImageType;
- typedef itk::Image<float, Dimension> MaskImageType;
-
- // Read the input
- typedef itk::ImageFileReader<InputImageType> InputReaderType;
- typename InputReaderType::Pointer reader = InputReaderType::New();
- reader->SetFileName( m_InputFileName);
- typename InputImageType::Pointer input= reader->GetOutput();
-
- // Read the mask
- typedef itk::ImageFileReader<MaskImageType> MaskReaderType;
- typename MaskReaderType::Pointer maskReader = MaskReaderType::New();
- maskReader->SetFileName( m_ArgsInfo.mask_arg);
- typename MaskImageType::Pointer mask= maskReader->GetOutput();
-
- // Filter setting background
- typedef clitk::SetBackgroundImageFilter<InputImageType,MaskImageType, InputImageType> SetBackgroundFilterType;
- typename SetBackgroundFilterType::Pointer setBackgroundFilter = SetBackgroundFilterType::New();
- setBackgroundFilter->SetInput(input);
- setBackgroundFilter->SetInput2(mask);
- if(m_ArgsInfo.fg_flag) setBackgroundFilter->SetForeground(m_ArgsInfo.fg_flag);
- if(m_ArgsInfo.maskValue_given) setBackgroundFilter->SetMaskValue(m_ArgsInfo.maskValue_arg);
- if(m_ArgsInfo.outsideValue_given) setBackgroundFilter->SetOutsideValue(m_ArgsInfo.outsideValue_arg);
- setBackgroundFilter->Update();
- typename InputImageType::Pointer output =setBackgroundFilter->GetOutput();
-
- // Output
- typedef itk::ImageFileWriter<InputImageType> WriterType;
- typename WriterType::Pointer writer = WriterType::New();
- writer->SetFileName(m_ArgsInfo.output_arg);
- writer->SetInput(output);
- writer->Update();
-
- }
+ typedef itk::Image<PixelType, Dimension> InputImageType;
+ typedef itk::Image<unsigned char, Dimension> MaskImageType;
+
+ // Read the input
+ typedef itk::ImageFileReader<InputImageType> InputReaderType;
+ typename InputReaderType::Pointer reader = InputReaderType::New();
+ reader->SetFileName( m_InputFileName);
+ typename InputImageType::Pointer input= reader->GetOutput();
+
+ // Read the mask
+ typedef itk::ImageFileReader<MaskImageType> MaskReaderType;
+ typename MaskReaderType::Pointer maskReader = MaskReaderType::New();
+ maskReader->SetFileName( m_ArgsInfo.mask_arg);
+ typename MaskImageType::Pointer mask= maskReader->GetOutput();
+
+ // Filter setting background
+ typedef clitk::SetBackgroundImageFilter<InputImageType,MaskImageType, InputImageType> SetBackgroundFilterType;
+ typename SetBackgroundFilterType::Pointer setBackgroundFilter = SetBackgroundFilterType::New();
+ setBackgroundFilter->SetInput(input);
+ setBackgroundFilter->SetInput2(mask);
+ if(m_ArgsInfo.fg_flag) setBackgroundFilter->SetForeground(m_ArgsInfo.fg_flag);
+ if(m_ArgsInfo.maskValue_given) setBackgroundFilter->SetMaskValue(m_ArgsInfo.maskValue_arg);
+ if(m_ArgsInfo.outsideValue_given) setBackgroundFilter->SetOutsideValue(m_ArgsInfo.outsideValue_arg);
+ setBackgroundFilter->Update();
+ typename InputImageType::Pointer output =setBackgroundFilter->GetOutput();
+
+ // Output
+ typedef itk::ImageFileWriter<InputImageType> WriterType;
+ typename WriterType::Pointer writer = WriterType::New();
+ writer->SetFileName(m_ArgsInfo.output_arg);
+ writer->SetInput(output);
+ writer->Update();
+
+}
}//end clitk
-
+
#endif //#define clitkSetBackgroundGenericFilter_txx
git://git.creatis.insa-lyon.fr / clitk.git / blobdiff