Program: gdcm
Module: $RCSfile: vtkgdcmSerieViewer2.cxx,v $
Language: C++
- Date: $Date: 2007/03/29 13:52:16 $
- Version: $Revision: 1.7 $
+ Date: $Date: 2007/06/21 14:47:16 $
+ Version: $Revision: 1.11 $
Copyright (c) CREATIS (Centre de Recherche et d'Applications en Traitement de
l'Image). All rights reserved. See Doc/License.txt or
=========================================================================*/
// This example illustrates how the vtkGdcmReader vtk class can
-// use the result of gdcm::SerieHelper constructor and check
+// use the result of GDCM_NAME_SPACE::SerieHelper constructor and check
// the various Setters :
// SerieHelper::SetOrderToReverse,
// SerieHelper::SetUserLessThanFunction
// SerieHelper::SetLoadMode
+// SerieHelper::SetDropDuplicatePositions
// vtkGdcmReader::SetUserFunction
// vtkGdcmReader::SetCoherentFileList
// Usage:
#define vtkFloatingPointType float
#endif
-void userSuppliedMirrorFunction (uint8_t *im, gdcm::File *f);
-void userSuppliedUpsideDownFunction(uint8_t *im, gdcm::File *f);
-bool userSuppliedLessThanFunction(gdcm::File *f1, gdcm::File *f2);
-bool userSuppliedLessThanFunction2(gdcm::File *f1, gdcm::File *f2);
+void userSuppliedMirrorFunction (uint8_t *im, GDCM_NAME_SPACE::File *f);
+void userSuppliedUpsideDownFunction(uint8_t *im, GDCM_NAME_SPACE::File *f);
+bool userSuppliedLessThanFunction(GDCM_NAME_SPACE::File *f1, GDCM_NAME_SPACE::File *f2);
+bool userSuppliedLessThanFunction2(GDCM_NAME_SPACE::File *f1, GDCM_NAME_SPACE::File *f2);
int orderNb;
uint16_t *elemsToOrderOn;
" usage: vtkgdcmSerieViewer dirname=sourcedirectory ",
" [noshadowseq][noshadow][noseq] ",
" [reverse] [{[mirror]|[topdown]|[rotate]}] ",
- " [order=] [check][debug] ",
+ " [order=] [nodup][check][debug] ",
" sourcedirectory : name of the directory holding the images ",
" if it holds more than one serie, ",
" only the first one is displayed. ",
" Right now : ValEntries only -just an example- ",
" or ",
" order= : order=name if we want to sort on file name (why not ?) ",
+ " nodup : user wants to drop duplicate positions ",
" debug : developper wants to run the program in 'debug mode' ",
FINISH_USAGE
// Initialize Arguments Manager
- gdcm::ArgMgr *am= new gdcm::ArgMgr(argc, argv);
+ GDCM_NAME_SPACE::ArgMgr *am= new GDCM_NAME_SPACE::ArgMgr(argc, argv);
if (argc == 1 || am->ArgMgrDefined("usage") )
{
char *dirName = am->ArgMgrWantString("dirname",usage);
- int loadMode = gdcm::LD_ALL;
+ int loadMode = GDCM_NAME_SPACE::LD_ALL;
if ( am->ArgMgrDefined("noshadowseq") )
- loadMode |= gdcm::LD_NOSHADOWSEQ;
+ loadMode |= GDCM_NAME_SPACE::LD_NOSHADOWSEQ;
else
{
if ( am->ArgMgrDefined("noshadow") )
- loadMode |= gdcm::LD_NOSHADOW;
+ loadMode |= GDCM_NAME_SPACE::LD_NOSHADOW;
if ( am->ArgMgrDefined("noseq") )
- loadMode |= gdcm::LD_NOSEQ;
+ loadMode |= GDCM_NAME_SPACE::LD_NOSEQ;
}
int reverse = am->ArgMgrDefined("reverse");
-
+ int nodup = am->ArgMgrDefined("nodup");
int mirror = am->ArgMgrDefined("mirror");
int upsidedown = am->ArgMgrDefined("upsidedown");
elemsToOrderOn = am->ArgMgrGetXInt16Enum("order", &orderNb);
if (am->ArgMgrDefined("debug"))
- gdcm::Debug::DebugOn();
+ GDCM_NAME_SPACE::Debug::DebugOn();
/* if unused Param we give up */
if ( am->ArgMgrPrintUnusedLabels() )
// ----------------------- End Arguments Manager ----------------------
- gdcm::SerieHelper *sh = gdcm::SerieHelper::New();
+ GDCM_NAME_SPACE::SerieHelper *sh = GDCM_NAME_SPACE::SerieHelper::New();
sh->SetLoadMode(loadMode);
if (reverse)
sh->SetSortOrderToReverse();
// Just to see
int nbFiles;
- // For all the 'Single Serie UID' FileSets of the gdcm::Serie
- gdcm::FileList *l = sh->GetFirstSingleSerieUIDFileSet();
+ // For all the 'Single Serie UID' FileSets of the GDCM_NAME_SPACE::Serie
+ GDCM_NAME_SPACE::FileList *l = sh->GetFirstSingleSerieUIDFileSet();
if (l == 0 )
{
std::cout << "Oops! No 'Single Serie UID' FileSet found ?!?" << std::endl;
else if (orderNb != 0)
sh->SetUserLessThanFunction(userSuppliedLessThanFunction);
+ if (nodup)
+ sh->SetDropDuplicatePositions(true);
+
while (l)
{
nbFiles = l->size() ;
if ( l->size() > 1 )
{
std::cout << "Sort list : " << nbFiles << " long" << std::endl;
- sh->OrderFileList(l); // sort the list
+
+ //---------------------------------------------------------
+ sh->OrderFileList(l); // sort the list (and compute ZSpacing !)
+ //---------------------------------------------------------
+
double zsp = sh->GetZSpacing();
std::cout << "List sorted, ZSpacing = " << zsp << std::endl;
break; // The first one is OK. user will have to check
} \
}
-void userSuppliedMirrorFunction(uint8_t *im, gdcm::File *f)
+void userSuppliedMirrorFunction(uint8_t *im, GDCM_NAME_SPACE::File *f)
{
if (f->GetZSize() != 1)
{
} \
}
-void userSuppliedUpsideDownFunction(uint8_t *im, gdcm::File *f)
+void userSuppliedUpsideDownFunction(uint8_t *im, GDCM_NAME_SPACE::File *f)
{
if (f->GetZSize() != 1)
{
// --------------------------------------------------------
-bool userSuppliedLessThanFunction(gdcm::File *f1, gdcm::File *f2)
+bool userSuppliedLessThanFunction(GDCM_NAME_SPACE::File *f1, GDCM_NAME_SPACE::File *f2)
{
// for *this* user supplied function, I supposed only ValEntries are checked.
//
std::string s1, s2;
- gdcm::DataEntry *e1,*e2;
+ GDCM_NAME_SPACE::DataEntry *e1,*e2;
for (int ri=0; ri<orderNb; ri++)
{
std::cout << std::hex << elemsToOrderOn[2*ri] << "|"
// Warning : it's up to 'vtkgdcmSerieViewer' user to find a suitable data set !
// --------------------------------------------------------
-bool userSuppliedLessThanFunction2(gdcm::File *f1, gdcm::File *f2)
+bool userSuppliedLessThanFunction2(GDCM_NAME_SPACE::File *f1, GDCM_NAME_SPACE::File *f2)
{
std::cout << "[" << f1->GetFileName() << "] vs ["
<< f2->GetFileName() << "]" << std::endl;
git://git.creatis.insa-lyon.fr / gdcm.git / blobdiff