Authors belong to:
- University of LYON http://www.universite-lyon.fr/
- - Léon Bérard cancer center http://oncora1.lyon.fnclcc.fr
+ - Léon Bérard cancer center http://www.centreleonberard.fr
- CREATIS CNRS laboratory http://www.creatis.insa-lyon.fr
This software is distributed WITHOUT ANY WARRANTY; without even
- BSD See included LICENSE.txt file
- CeCILL-B http://www.cecill.info/licences/Licence_CeCILL-B_V1-en.html
-======================================================================-====*/
+===========================================================================**/
#include <utility>
#include <cassert>
+#include <ctime>
+#include <string>
+#include <ostream>
+#include <sstream>
#include <QApplication>
#include <QPixmap>
#include <QSplashScreen>
#include <QTimer>
#include <QDesktopWidget>
+#include <QDir>
+
+#if VTK_MAJOR_VERSION > 5
+#include <vtkAutoInit.h>
+ VTK_MODULE_INIT(vtkInteractionStyle);
+ VTK_MODULE_INIT(vtkRenderingOpenGL);
+ VTK_MODULE_INIT(vtkRenderingFreeType);
+#define vtkRenderingContext2D_AUTOINIT 1(vtkRenderingContextOpenGL)
+#endif
+
#include "clitkIO.h"
#include "vvMainWindow.h"
-#include "vvConstants.h"
+#include "vvReadState.h"
+#include "vvToolsList.h"
+#include "vvConfiguration.h"
+
+#include <vtkFileOutputWindow.h>
+#include <vtkSmartPointer.h>
+
+#include <itkFileOutputWindow.h>
+#include <itkSmartPointer.h>
+#include <itksys/SystemTools.hxx>
+
+#include <sys/types.h>
+#include <sys/stat.h>
+#include <errno.h>
+#pragma comment(lib, "ws2_32.lib")
+
+typedef enum {O_BASE,O_OVERLAY,O_FUSION,O_VF,O_CONTOUR,O_LANDMARKS} OpenModeType;
+typedef enum {P_NORMAL,P_SEQUENCE,P_WINDOW,P_LEVEL} ParseModeType;
void load_image_first_error()
{
exit(1);
}
+std::string create_timed_string()
+{
+ time_t t;
+ time(&t);
+
+ struct tm* pt = localtime(&t);
+
+ const int size = 64;
+ char st[size];
+ strftime(st, size, "%Y%m%d-%H%M%S", pt);
+
+ return st;
+}
+
+void open_sequence(vvMainWindow &window,
+ OpenModeType &open_mode,
+ ParseModeType &parse_mode,
+ std::vector<std::string> &sequence_filenames,
+ int n_image_loaded)
+{
+ const std::string open_mode_names[] = {"base", "overlay", "fusion", "vf", "contour", "fusionSequence"};
+ if(open_mode==O_BASE)
+ window.LoadImages(sequence_filenames, vvImageReader::MERGEDWITHTIME);
+ else if (open_mode==O_OVERLAY && window.CheckAddedImage(n_image_loaded-1, "overlay"))
+ window.AddOverlayImage(n_image_loaded-1,sequence_filenames,vvImageReader::MERGEDWITHTIME);
+ else if (open_mode==O_LANDMARKS)
+ window.AddLandmarks(n_image_loaded-1,sequence_filenames);
+ else if (open_mode==O_FUSION && window.CheckAddedImage(n_image_loaded-1, "fusion") && window.CheckAddedImage(n_image_loaded-1, "fusionSequence"))
+ window.AddFusionImage(n_image_loaded-1,sequence_filenames,vvImageReader::MERGEDWITHTIME);
+ else {
+ std::cerr << "Sequences are not managed for opening " << open_mode_names[open_mode] << std::endl;
+ exit(1);
+ }
+
+ // Reset
+ sequence_filenames.clear();
+ parse_mode=P_NORMAL;
+ open_mode=O_BASE;
+}
+
//------------------------------------------------------------------------------
+#ifdef _WIN32
+int CALLBACK WinMain(HINSTANCE hInstance, HINSTANCE prevInstance, LPSTR lpCmdLine, int nShowCmd)
+{
+ int argc = __argc;
+ char **argv = __argv;
+#else
int main( int argc, char** argv )
{
+#endif
+
CLITK_INIT;
QApplication app( argc, argv );
Q_INIT_RESOURCE(vvIcons);
- //QPixmap pixmap(":/splashscreen.PNG");
- QSplashScreen *splash = new QSplashScreen(QPixmap(QString::fromUtf8(":/new/prefix1/splashscreen.PNG")));
- /*splash->showMessage("VV 1.0 developped by Léon Bérard c`ancer center http://oncora1.lyon.fnclcc.fr and CREATIS-LRMN http://www.creatis.insa-lyon.fr",(Qt::AlignRight | Qt::AlignBottom));*/
- // splash->show();
- QTimer::singleShot(2000, splash, SLOT(close()));
- while (!splash->isHidden())
- app.processEvents();
+
+ //
+ // ATTENTION: Rômulo Pinho - 05/08/2011
+ // Forcing the locale of the application is necessary
+ // because QT initialization changes it to the locale
+ // of the language of the system. This can cause
+ // inconsistencies when, e.g., reading float values
+ // from DICOM fields with gdcm, since the decimal
+ // point may be changed for a comma (as in French).
+ // In practice, functions such as scanf and its
+ // variations are directly affected.
+ // https://bugreports.qt.nokia.com//browse/QTBUG-15247?page=com.atlassian.jira.plugin.system.issuetabpanels%253Achangehistory-tabpanel
+ //
+#ifndef _WIN32
+ std::string old_locale = setlocale(LC_NUMERIC, NULL);
+ setlocale(LC_NUMERIC, "POSIX");
+#endif
vvMainWindow window;
window.show();
std::vector<std::string> sequence_filenames;
- enum {P_NORMAL,P_SEQUENCE};
- int parse_mode=P_NORMAL;
+ ParseModeType parse_mode = P_NORMAL;
+ OpenModeType open_mode = O_BASE;
int n_image_loaded=0;
+ std::string win(""), lev("");
+ int first_of_wl_set = -1;
+ bool new_wl_set = false;
+ bool link_images = false;
if (argc >1) {
for (int i = 1; i < argc; i++) {
std::string current = argv[i];
- if (!current.compare(0,2,"--")) { //We are parsing an option
+ if (!current.compare(0,1,"-")) { // && !current.compare(0,2,"--")) { //We are parsing an option
if (parse_mode == P_SEQUENCE) {//First finish the current sequence
- window.LoadImages(sequence_filenames,MERGEDWITHTIME);
- sequence_filenames.clear();
+ open_sequence(window, open_mode, parse_mode, sequence_filenames, n_image_loaded);
+ }
+ else if (parse_mode == P_WINDOW) { // handle negative window values
+ win=current;
+ window.ApplyWindowToSetOfImages(atof(win.c_str()), first_of_wl_set, n_image_loaded-1);
parse_mode=P_NORMAL;
+ new_wl_set = false;
+ continue;
+ } else if (parse_mode == P_LEVEL) { // handle negative level values
+ lev=current;
+ window.ApplyLevelToSetOfImages(atof(lev.c_str()), first_of_wl_set, n_image_loaded-1);
+ parse_mode=P_NORMAL;
+ new_wl_set = false;
+ continue;
}
- if (current=="--vf") {
+ if ((current=="--help") || (current=="-h")) {
+ std::cout << "vv " << VV_VERSION << ", the 2D, 2D+t, 3D and 3D+t (or 4D) image viewer" << std::endl << std::endl
+ << "Synopsis: vv file(s) [OPTIONS] file(s)" << std::endl << std::endl
+ << "Open file(s) for visualization." << std::endl << std::endl
+ << "OPTIONS may be:" << std::endl
+ << "--help \t Print command line help and exit." << std::endl
+ << "--window number\t Gray scale window width for set of images appearing before in the cmd line (may appear more than once)." << std::endl
+ << "--level number \t Gray scale window level for set of images appearing before in the cmd line (may appear more than once)." << std::endl
+ << "--linkall \t Link pan, zoom and spatial position of crosshair in images." << std::endl
+ << "--log \t Log output messages in vv-log directory." << std::endl
+ << "--state file \t Read display parameters from file." << std::endl
+ << "--sequence file\t Read all file(s) until next option in a single temporal sequence." << std::endl
+ << std::endl
+ << "These last options must follow a file name since they overlay something on an image:" << std::endl
+ << "--vf file \t Overlay the vector field in file." << std::endl
+ << "--overlay [--sequence] file(s) \t Overlay the image in file with complementary colors." << std::endl
+ << "--fusion [--sequence] file(s) \t Overlay the image in file with alpha blending and colormap." << std::endl
+ //<< "--roi file \t Overlay binary mask images. Option may be repeated on a single base image." << std::endl
+ << "--contour file \t Overlay DICOM RT-STRUCT contours." << std::endl
+ << "--landmarks [--sequence] file(s) \t Overlay the landmarks in file(s) (.txt or .pts)." << std::endl;
+ exit(0);
+ } else if (current=="--vf") {
if (!n_image_loaded) load_image_first_error();
- window.AddField(argv[i+1],n_image_loaded-1);
- i++; //skip vf name
- }
- else if (current=="--overlay") {
- if (!n_image_loaded) load_image_first_error();
- window.AddOverlayImage(n_image_loaded-1,argv[i+1]);
- i++; //skip overlay name
- }
- else if (current=="--roi") {
- if (!n_image_loaded) load_image_first_error();
- window.AddROI(n_image_loaded-1,argv[i+1]);
- i++; //skip roi name
+ open_mode = O_VF;
+ } else if (current=="--overlay") {
+ if (!n_image_loaded) load_image_first_error();
+ open_mode = O_OVERLAY;
+ } else if (current=="--contour") {
+ if (!n_image_loaded) load_image_first_error();
+ open_mode = O_CONTOUR;
+ } else if (current=="--fusion") {
+ if (!n_image_loaded) load_image_first_error();
+ open_mode = O_FUSION;
+ } else if (current=="--landmarks") {
+ if (!n_image_loaded) load_image_first_error();
+ open_mode = O_LANDMARKS;
+ } else if (current == "--sequence") {
+ if(open_mode==O_BASE) n_image_loaded++; //count only one for the whole sequence
+ parse_mode=P_SEQUENCE;
+ if (!new_wl_set) {
+ new_wl_set = true;
+ first_of_wl_set = n_image_loaded-1;
}
- else if (current=="--fusion") {
- if (!n_image_loaded) load_image_first_error();
- window.AddFusionImage(n_image_loaded-1,argv[i+1]);
- i++; //skip fusion name
+ } else if (current == "--window") {
+ parse_mode=P_WINDOW;
+ } else if (current == "--level") {
+ parse_mode=P_LEVEL;
+ } else if (current == "--linkall") {
+ link_images = true;
+ }
+ else if (current == "--log") {
+ std::string log_dir = QDir::tempPath().toStdString() + std::string("/vv-log");
+
+ if(itksys::SystemTools::FileExists(log_dir.c_str()) &&
+ !itksys::SystemTools::FileIsDirectory(log_dir.c_str())) {
+ std::cerr << "Error creating log directory, file exists and is not a directory." << std::endl;
+ exit(1);
+ } else if(!itksys::SystemTools::MakeDirectory(log_dir.c_str())) {
+ std::cerr << "Error creating log directory." << std::endl;
+ exit(1);
}
- else if (current == "--sequence") {
- n_image_loaded++; //count only one for the sequence
- parse_mode=P_SEQUENCE; }
- }
- else if (parse_mode == P_SEQUENCE)
+
+ std::string log_file = log_dir + "/" + create_timed_string() + ".log";
+
+ itk::SmartPointer<itk::FileOutputWindow> itk_log = itk::FileOutputWindow::New();
+ itk_log->SetFileName(log_file.c_str());
+ itk_log->FlushOn();
+ itk_log->AppendOn();
+ itk::OutputWindow::SetInstance(itk_log);
+
+ vtkSmartPointer<vtkFileOutputWindow> vtk_log = vtkFileOutputWindow::New();
+ vtk_log->SetFileName(log_file.c_str());
+ vtk_log->FlushOn();
+ vtk_log->AppendOn();
+ vtkOutputWindow::SetInstance(vtk_log);
+ } else if (current == "--state") {
+ //window.ReadSavedStateFile(argv[i+1]);
+ vvReadState read_state;
+ read_state.Run(&window, argv[i+1]);
+ n_image_loaded += read_state.GetNumberOfImages();
+ i++;
+ }
+
+ } else if (parse_mode == P_SEQUENCE) {
sequence_filenames.push_back(current);
- else {
- std::vector<std::string> image; image.push_back(current);
- window.LoadImages(image,IMAGE);
- n_image_loaded++;
+ } else if (parse_mode == P_WINDOW) {
+ win=current;
+ window.ApplyWindowToSetOfImages(atof(win.c_str()), first_of_wl_set, n_image_loaded-1);
+ parse_mode=P_NORMAL;
+ new_wl_set = false;
+ } else if (parse_mode == P_LEVEL) {
+ lev=current;
+ window.ApplyLevelToSetOfImages(atof(lev.c_str()), first_of_wl_set, n_image_loaded-1);
+ parse_mode=P_NORMAL;
+ new_wl_set = false;
+ } else {
+ std::vector<std::string> image;
+ image.push_back(current);
+ if(open_mode==O_BASE) {
+ window.LoadImages(image, vvImageReader::IMAGE);
+ n_image_loaded++;
+ if (!new_wl_set) {
+ new_wl_set = true;
+ first_of_wl_set = n_image_loaded-1;
+ }
+ }
+ else if (open_mode==O_VF && window.CheckAddedImage(n_image_loaded-1, "vector"))
+ window.AddField(current.c_str(), n_image_loaded-1);
+ else if (open_mode==O_OVERLAY && window.CheckAddedImage(n_image_loaded-1, "overlay"))
+ window.AddOverlayImage(n_image_loaded-1,image,vvImageReader::IMAGE);
+ else if (open_mode==O_CONTOUR)
+ window.AddDCStructContour(n_image_loaded-1,current.c_str());
+ else if (open_mode==O_FUSION && window.CheckAddedImage(n_image_loaded-1, "fusion") && window.CheckAddedImage(n_image_loaded-1, "fusionSequence"))
+ window.AddFusionImage(n_image_loaded-1,image,vvImageReader::IMAGE);
+ else if (open_mode==O_LANDMARKS)
+ window.AddLandmarks(n_image_loaded-1,image);
+ open_mode = O_BASE;
}
}
- if (parse_mode == P_SEQUENCE) {//Finish any current sequence
- window.LoadImages(sequence_filenames,MERGEDWITHTIME);
- sequence_filenames.clear();
- parse_mode=P_NORMAL;
+ if (parse_mode == P_SEQUENCE) { //Finish any current sequence
+ open_sequence(window, open_mode, parse_mode, sequence_filenames, n_image_loaded);
}
-
}
- return app.exec();
+// if(win!="" && lev!="") {
+// window.SetWindowLevel(atof(win.c_str()), atof(lev.c_str()));
+// window.ApplyWindowLevelToAllImages();
+// }
+
+ if (link_images)
+ window.LinkAllImages();
+
+ int ret = app.exec();
+
+#ifndef _WIN32
+ // restoring the locale, just to be clean...
+ setlocale(LC_NUMERIC, old_locale.c_str());
+#endif
+
+ return ret;
}
git://git.creatis.insa-lyon.fr / clitk.git / blobdiff