Authors belong to:
- University of LYON http://www.universite-lyon.fr/
- - Léon Bérard cancer center http://oncora1.lyon.fnclcc.fr
+ - Léon Bérard cancer center http://www.centreleonberard.fr
- CREATIS CNRS laboratory http://www.creatis.insa-lyon.fr
This software is distributed WITHOUT ANY WARRANTY; without even
- BSD See included LICENSE.txt file
- CeCILL-B http://www.cecill.info/licences/Licence_CeCILL-B_V1-en.html
-======================================================================-====*/
+===========================================================================**/
#include <utility>
#include <cassert>
+#include <ctime>
+#include <string>
+#include <ostream>
+#include <sstream>
#include <QApplication>
#include <QPixmap>
#include <QSplashScreen>
#include <QTimer>
#include <QDesktopWidget>
+#include <QDir>
#include "clitkIO.h"
#include "vvMainWindow.h"
-#include "vvConstants.h"
+#include <vtkFileOutputWindow.h>
+#include <vtkSmartPointer.h>
+#include <itkFileOutputWindow.h>
+#include <itkSmartPointer.h>
+#include <itksys/SystemTools.hxx>
+
+#include <sys/types.h>
+#include <sys/stat.h>
+#include <errno.h>
+
+void load_image_first_error()
+{
+ std::cerr << "You need to load an image before adding an overlay!" << std::endl;
+ exit(1);
+}
+
+std::string create_timed_string()
+{
+ time_t t;
+ time(&t);
+
+ struct tm* pt = localtime(&t);
+
+ const int size = 64;
+ char st[size];
+ strftime(st, size, "%Y%m%d-%H%M%S", pt);
+
+ return st;
+}
//------------------------------------------------------------------------------
int main( int argc, char** argv )
Q_INIT_RESOURCE(vvIcons);
//QPixmap pixmap(":/splashscreen.PNG");
QSplashScreen *splash = new QSplashScreen(QPixmap(QString::fromUtf8(":/new/prefix1/splashscreen.PNG")));
- /*splash->showMessage("VV 1.0 developped by Léon Bérard c`ancer center http://oncora1.lyon.fnclcc.fr and CREATIS-LRMN http://www.creatis.insa-lyon.fr",(Qt::AlignRight | Qt::AlignBottom));*/
+ /*splash->showMessage("VV 1.0 developped by Léon Bérard c`ancer center http://www.centreleonberard.fr and CREATIS-LRMN http://www.creatis.insa-lyon.fr",(Qt::AlignRight | Qt::AlignBottom));*/
// splash->show();
QTimer::singleShot(2000, splash, SLOT(close()));
while (!splash->isHidden())
window.show();
- std::vector<std::string> filenames;
- std::vector<std::pair<int ,std::string> > overlays;
- std::vector<std::pair<int ,std::string> > vector_fields;
+ std::vector<std::string> sequence_filenames;
+ enum {P_NORMAL,P_SEQUENCE,P_WINDOW,P_LEVEL};
+ int parse_mode=P_NORMAL;
+ int n_image_loaded=0;
+ std::string win(""), lev("");
+
if (argc >1) {
for (int i = 1; i < argc; i++) {
- std::string temp = argv[i];
- if (temp=="--vf") {
- assert(filenames.size()>=1);
- vector_fields.push_back(std::make_pair(filenames.size()-1,argv[i+1]));
- i++; //skip vf name
- } else if (temp=="--overlay") {
- assert(filenames.size()>=1);
- overlays.push_back(std::make_pair(filenames.size()-1,argv[i+1]));
- i++; //skip overlay name
- } else
- filenames.push_back(temp);
+ std::string current = argv[i];
+ if (!current.compare(0,2,"--")) { //We are parsing an option
+ if (parse_mode == P_SEQUENCE) {//First finish the current sequence
+ window.LoadImages(sequence_filenames, vvImageReader::MERGEDWITHTIME);
+ sequence_filenames.clear();
+ parse_mode=P_NORMAL;
+ }
+ if (current=="--vf") {
+ if (!n_image_loaded) load_image_first_error();
+ window.AddField(argv[i+1],n_image_loaded-1);
+ i++; //skip vf name
+ } else if (current=="--overlay") {
+ if (!n_image_loaded) load_image_first_error();
+ window.AddOverlayImage(n_image_loaded-1,argv[i+1]);
+ i++; //skip overlay name
+ } else if (current=="--roi") {
+ if (!n_image_loaded) load_image_first_error();
+ window.AddROI(n_image_loaded-1,argv[i+1]);
+ i++; //skip roi name
+ } else if (current=="--fusion") {
+ if (!n_image_loaded) load_image_first_error();
+ window.AddFusionImage(n_image_loaded-1,argv[i+1]);
+ i++; //skip fusion name
+ } else if (current == "--sequence") {
+ n_image_loaded++; //count only one for the sequence
+ parse_mode=P_SEQUENCE;
+ } else if (current == "--window") {
+ parse_mode=P_WINDOW;
+ } else if (current == "--level") {
+ parse_mode=P_LEVEL;
+ } else if (current == "--log") {
+ std::string log_dir = QDir::tempPath().toStdString() + std::string("/vv-log");
+
+ if(itksys::SystemTools::FileExists(log_dir.c_str()) &&
+ !itksys::SystemTools::FileIsDirectory(log_dir.c_str())) {
+ itkGenericExceptionMacro(<< "Error creating log directory, file exists and is not a directory.");
+ } else if(!itksys::SystemTools::MakeDirectory(log_dir.c_str())) {
+ itkGenericExceptionMacro(<< "Error creating log directory.");
+ }
+
+ std::string log_file = log_dir + "/" + create_timed_string() + ".log";
+
+ itk::SmartPointer<itk::FileOutputWindow> itk_log = itk::FileOutputWindow::New();
+ itk_log->SetFileName(log_file.c_str());
+ itk_log->FlushOn();
+ itk_log->AppendOn();
+ itk::OutputWindow::SetInstance(itk_log);
+
+ vtkSmartPointer<vtkFileOutputWindow> vtk_log = vtkFileOutputWindow::New();
+ vtk_log->SetFileName(log_file.c_str());
+ vtk_log->FlushOn();
+ vtk_log->AppendOn();
+ vtkOutputWindow::SetInstance(vtk_log);
+ }
+ } else if (parse_mode == P_SEQUENCE) {
+ sequence_filenames.push_back(current);
+ } else if (parse_mode == P_WINDOW) {
+ win=current;
+ parse_mode=P_NORMAL;
+ } else if (parse_mode == P_LEVEL) {
+ lev=current;
+ parse_mode=P_NORMAL;
+ } else {
+ std::vector<std::string> image;
+ image.push_back(current);
+ window.LoadImages(image, vvImageReader::IMAGE);
+ n_image_loaded++;
+ }
}
- window.LoadImages(filenames,IMAGE);
- for (std::vector<std::pair<int ,std::string> >::iterator i=overlays.begin();
- i!=overlays.end(); i++)
- window.AddOverlayImage((*i).first,(*i).second.c_str());
- for (std::vector<std::pair<int ,std::string> >::iterator i=vector_fields.begin();
- i!=vector_fields.end(); i++)
- window.AddField((*i).second.c_str(), (*i).first);
+ if (parse_mode == P_SEQUENCE) { //Finish any current sequence
+ window.LoadImages(sequence_filenames, vvImageReader::MERGEDWITHTIME);
+ sequence_filenames.clear();
+ parse_mode=P_NORMAL;
+ }
+ }
+ if(win!="" && lev!="") {
+ window.WindowLevelChanged(atof(win.c_str()), atof(lev.c_str()), 6, 0);
+ window.ApplyWindowLevelToAllImages();
}
return app.exec();
git://git.creatis.insa-lyon.fr / clitk.git / blobdiff