Authors belong to:
- University of LYON http://www.universite-lyon.fr/
- - Léon Bérard cancer center http://oncora1.lyon.fnclcc.fr
+ - Léon Bérard cancer center http://www.centreleonberard.fr
- CREATIS CNRS laboratory http://www.creatis.insa-lyon.fr
This software is distributed WITHOUT ANY WARRANTY; without even
- BSD See included LICENSE.txt file
- CeCILL-B http://www.cecill.info/licences/Licence_CeCILL-B_V1-en.html
-======================================================================-====*/
+===========================================================================**/
#include <utility>
#include <cassert>
#include <ctime>
#include "clitkIO.h"
#include "vvMainWindow.h"
-#include "vvConstants.h"
+#include "vvReadState.h"
+#include "vvToolsList.h"
+#include "vvConfiguration.h"
#include <vtkFileOutputWindow.h>
#include <vtkSmartPointer.h>
+
#include <itkFileOutputWindow.h>
#include <itkSmartPointer.h>
#include <itksys/SystemTools.hxx>
#include <sys/types.h>
#include <sys/stat.h>
-#include <errno.h>
+#include <errno.h>
void load_image_first_error()
{
}
//------------------------------------------------------------------------------
+#ifdef _WIN32
+int CALLBACK WinMain(HINSTANCE hInstance, HINSTANCE prevInstance, LPSTR lpCmdLine, int nShowCmd)
+{
+ int argc = __argc;
+ char **argv = __argv;
+#else
int main( int argc, char** argv )
{
+#endif
+
CLITK_INIT;
QApplication app( argc, argv );
Q_INIT_RESOURCE(vvIcons);
- //QPixmap pixmap(":/splashscreen.PNG");
- QSplashScreen *splash = new QSplashScreen(QPixmap(QString::fromUtf8(":/new/prefix1/splashscreen.PNG")));
- /*splash->showMessage("VV 1.0 developped by Léon Bérard c`ancer center http://oncora1.lyon.fnclcc.fr and CREATIS-LRMN http://www.creatis.insa-lyon.fr",(Qt::AlignRight | Qt::AlignBottom));*/
- // splash->show();
- QTimer::singleShot(2000, splash, SLOT(close()));
- while (!splash->isHidden())
- app.processEvents();
+
+ //
+ // ATTENTION: Rômulo Pinho - 05/08/2011
+ // Forcing the locale of the application is necessary
+ // because QT initialization changes it to the locale
+ // of the language of the system. This can cause
+ // inconsistencies when, e.g., reading float values
+ // from DICOM fields with gdcm, since the decimal
+ // point may be changed for a comma (as in French).
+ // In practice, functions such as scanf and its
+ // variations are directly affected.
+ // https://bugreports.qt.nokia.com//browse/QTBUG-15247?page=com.atlassian.jira.plugin.system.issuetabpanels%253Achangehistory-tabpanel
+ //
+#ifndef _WIN32
+ std::string old_locale = setlocale(LC_NUMERIC, NULL);
+ setlocale(LC_NUMERIC, "POSIX");
+#endif
vvMainWindow window;
window.show();
std::vector<std::string> sequence_filenames;
- enum {P_NORMAL,P_SEQUENCE,P_WINDOW,P_LEVEL};
- int parse_mode=P_NORMAL;
+ enum {P_NORMAL,P_SEQUENCE,P_WINDOW,P_LEVEL} parse_mode;
+ parse_mode=P_NORMAL;
+ enum {O_BASE,O_OVERLAY,O_FUSION,O_VF,O_CONTOUR} open_mode;
+ std::string open_mode_names[] = {"base", "overlay", "fusion", "vf", "contour"};
+ open_mode=O_BASE;
int n_image_loaded=0;
std::string win(""), lev("");
+ bool link_images = false;
if (argc >1) {
for (int i = 1; i < argc; i++) {
std::string current = argv[i];
if (!current.compare(0,2,"--")) { //We are parsing an option
if (parse_mode == P_SEQUENCE) {//First finish the current sequence
- window.LoadImages(sequence_filenames,MERGEDWITHTIME);
+ if(open_mode==O_BASE)
+ window.LoadImages(sequence_filenames, vvImageReader::MERGEDWITHTIME);
+ else if (open_mode==O_OVERLAY)
+ window.AddOverlayImage(n_image_loaded-1,sequence_filenames,vvImageReader::IMAGE);
+ else {
+ std::cerr << "Sequences are not managed for opening " << open_mode_names[open_mode] << std::endl;
+ exit(1);
+ }
sequence_filenames.clear();
parse_mode=P_NORMAL;
}
+ if ((current=="--help") || (current=="-h")) {
+ std::cout << "vv " << VV_VERSION << ", the 2D, 2D+t, 3D and 3D+t (or 4D) image viewer" << std::endl << std::endl
+ << "Synopsis: vv file(s) [OPTIONS] file(s)" << std::endl << std::endl
+ << "Open file(s) for visualization." << std::endl << std::endl
+ << "OPTIONS may be:" << std::endl
+ << "--help \t Print command line help and exit." << std::endl
+ << "--window number\t Gray scale window width for all images." << std::endl
+ << "--level number \t Gray scale window level for all images." << std::endl
+ << "--linkall \t Link pan, zoom and spatial position of crosshair in images." << std::endl
+ << "--log \t Log output messages in vv-log directory." << std::endl
+ << "--state file \t Read display parameters from file." << std::endl
+ << "--sequence file\t Read all file(s) until next option in a single temporal sequence." << std::endl
+ << std::endl
+ << "These last options must follow a file name since they overlay something on an image:" << std::endl
+ << "--vf file \t Overlay the vector field in file." << std::endl
+ << "--overlay file \t Overlay the image in file with complementary colors." << std::endl
+ << "--fusion file \t Overlay the image in file with alpha blending and colormap." << std::endl
+ //<< "--roi file \t Overlay binary mask images. Option may be repeated on a single base image." << std::endl
+ << "--contour file \t Overlay DICOM RT-STRUCT contours." << std::endl;
+ exit(0);
+ }
if (current=="--vf") {
if (!n_image_loaded) load_image_first_error();
- window.AddField(argv[i+1],n_image_loaded-1);
- i++; //skip vf name
+ open_mode = O_VF;
} else if (current=="--overlay") {
if (!n_image_loaded) load_image_first_error();
- window.AddOverlayImage(n_image_loaded-1,argv[i+1]);
- i++; //skip overlay name
- } else if (current=="--roi") {
+ open_mode = O_OVERLAY;
+ } else if (current=="--contour") {
if (!n_image_loaded) load_image_first_error();
- window.AddROI(n_image_loaded-1,argv[i+1]);
- i++; //skip roi name
+ open_mode = O_CONTOUR;
} else if (current=="--fusion") {
if (!n_image_loaded) load_image_first_error();
- window.AddFusionImage(n_image_loaded-1,argv[i+1]);
- i++; //skip fusion name
+ open_mode = O_FUSION;
} else if (current == "--sequence") {
- n_image_loaded++; //count only one for the sequence
+ if(open_mode==O_BASE) n_image_loaded++; //count only one for the whole sequence
parse_mode=P_SEQUENCE;
} else if (current == "--window") {
parse_mode=P_WINDOW;
} else if (current == "--level") {
parse_mode=P_LEVEL;
- } else if (current == "--log") {
+ } else if (current == "--linkall") {
+ link_images = true;
+ }
+ else if (current == "--log") {
std::string log_dir = QDir::tempPath().toStdString() + std::string("/vv-log");
if(itksys::SystemTools::FileExists(log_dir.c_str()) &&
!itksys::SystemTools::FileIsDirectory(log_dir.c_str())) {
- itkGenericExceptionMacro(<< "Error creating log directory, file exists and is not a directory.");
+ std::cerr << "Error creating log directory, file exists and is not a directory." << std::endl;
+ exit(1);
} else if(!itksys::SystemTools::MakeDirectory(log_dir.c_str())) {
- itkGenericExceptionMacro(<< "Error creating log directory.");
+ std::cerr << "Error creating log directory." << std::endl;
+ exit(1);
}
std::string log_file = log_dir + "/" + create_timed_string() + ".log";
vtk_log->FlushOn();
vtk_log->AppendOn();
vtkOutputWindow::SetInstance(vtk_log);
+ } else if (current == "--state") {
+ //window.ReadSavedStateFile(argv[i+1]);
+ vvReadState read_state;
+ read_state.Run(&window, argv[i+1]);
+ n_image_loaded += read_state.GetNumberOfImages();
+ i++;
}
+
} else if (parse_mode == P_SEQUENCE) {
sequence_filenames.push_back(current);
} else if (parse_mode == P_WINDOW) {
} else {
std::vector<std::string> image;
image.push_back(current);
- window.LoadImages(image,IMAGE);
- n_image_loaded++;
+ if(open_mode==O_BASE) {
+ window.LoadImages(image, vvImageReader::IMAGE);
+ n_image_loaded++;
+ }
+ else if (open_mode==O_VF)
+ window.AddField(current.c_str(), n_image_loaded-1);
+ else if (open_mode==O_OVERLAY)
+ window.AddOverlayImage(n_image_loaded-1,image,vvImageReader::IMAGE);
+ else if (open_mode==O_CONTOUR)
+ window.AddDCStructContour(n_image_loaded-1,current.c_str());
+ else if (open_mode==O_FUSION)
+ window.AddFusionImage(n_image_loaded-1,current.c_str());
+ open_mode = O_BASE;
}
}
if (parse_mode == P_SEQUENCE) { //Finish any current sequence
- window.LoadImages(sequence_filenames,MERGEDWITHTIME);
+ if(open_mode==O_BASE)
+ window.LoadImages(sequence_filenames, vvImageReader::MERGEDWITHTIME);
+ else if (open_mode==O_OVERLAY)
+ window.AddOverlayImage(n_image_loaded-1,sequence_filenames, vvImageReader::MERGEDWITHTIME);
+ else {
+ std::cerr << "Sequences are not managed for opening " << open_mode_names[open_mode] << std::endl;
+ exit(1);
+ }
sequence_filenames.clear();
parse_mode=P_NORMAL;
}
}
if(win!="" && lev!="") {
- window.WindowLevelChanged(atof(win.c_str()), atof(lev.c_str()), 6, 0);
+ window.SetWindowLevel(atof(win.c_str()), atof(lev.c_str()));
window.ApplyWindowLevelToAllImages();
}
- return app.exec();
+ if (link_images)
+ window.LinkAllImages();
+
+ int ret = app.exec();
+
+#ifndef _WIN32
+ // restoring the locale, just to be clean...
+ setlocale(LC_NUMERIC, old_locale.c_str());
+#endif
+
+ return ret;
}
git://git.creatis.insa-lyon.fr / clitk.git / blobdiff