/*=========================================================================
- Program: vv http://www.creatis.insa-lyon.fr/rio/vv
+Program: vv http://www.creatis.insa-lyon.fr/rio/vv
- Authors belong to:
- - University of LYON http://www.universite-lyon.fr/
- - Léon Bérard cancer center http://www.centreleonberard.fr
- - CREATIS CNRS laboratory http://www.creatis.insa-lyon.fr
+Authors belong to:
+- University of LYON http://www.universite-lyon.fr/
+- Léon Bérard cancer center http://www.centreleonberard.fr
+- CREATIS CNRS laboratory http://www.creatis.insa-lyon.fr
- This software is distributed WITHOUT ANY WARRANTY; without even
- the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR
- PURPOSE. See the copyright notices for more information.
+This software is distributed WITHOUT ANY WARRANTY; without even
+the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR
+PURPOSE. See the copyright notices for more information.
- It is distributed under dual licence
+It is distributed under dual licence
- - BSD See included LICENSE.txt file
- - CeCILL-B http://www.cecill.info/licences/Licence_CeCILL-B_V1-en.html
+- BSD See included LICENSE.txt file
+- CeCILL-B http://www.cecill.info/licences/Licence_CeCILL-B_V1-en.html
===========================================================================**/
#include <algorithm>
#include "QTreePushButton.h"
#include <QUrl>
#include <QSettings>
+#include <QShortcut>
// VV include
#include "vvMainWindow.h"
#include "vvSaveState.h"
#include "vvReadState.h"
#include "clitkConfiguration.h"
+#include "clitkMatrix.h"
+#ifdef Q_OS_OSX
+# include "vvOSXHelper.h"
+#endif
// ITK include
#include <itkImage.h>
#include <itkNumericSeriesFileNames.h>
// VTK include
+#include <vtkImageMapper3D.h>
+#include <vtkInformation.h>
+#include <vtkVersion.h>
#include <vtkImageData.h>
#include <vtkImageActor.h>
#include <vtkCornerAnnotation.h>
// Standard includes
#include <iostream>
+#include <fstream>
#include <sstream>
#include <iomanip>
#define COLUMN_IMAGE_NAME 7
#ifdef CLITK_PRIVATE_FEATURES
-#define EXTENSIONS "Images ( *.bmp *.png *.jpeg *.jpg *.tif *.mhd *.mha *.hdr *.vox *.his *.xdr *.SCAN *.nii *.nrrd *.nhdr *.refscan *.nii.gz *.usf)"
+#define EXTENSIONS "Images ( *.bmp *.dcm *.png *.jpeg *.jpg *.tif *.mhd *.mha *.hdr *.vox *.his *.xdr *.SCAN *.nii *.nrrd *.nhdr *.refscan *.nii.gz *.usf *.svl)"
#else
-#define EXTENSIONS "Images ( *.bmp *.png *.jpeg *.jpg *.tif *.mhd *.mha *.hdr *.vox *.his *.xdr *.SCAN *.nii *.nrrd *.nhdr *.refscan *.nii.gz)"
+#define EXTENSIONS "Images ( *.bmp *.dcm *.png *.jpeg *.jpg *.tif *.mhd *.mha *.hdr *.vox *.his *.xdr *.SCAN *.nii *.nrrd *.nhdr *.refscan *.nii.gz)"
#endif
/*Data Tree values
- 0,Qt::UserRole full filename
- 1,Qt::CheckStateRole checkbutton UL View
- 1,Qt::UserRole overlay, fusion or vector
- 2,Qt::CheckStateRole checkbutton UR View
- 3,Qt::CheckStateRole checkbutton DL View
- 4,Qt::CheckStateRole checkbutton DR View
- 5,0 short filename
- 5,Qt::UserRole mSlicerManager id*/
+0,Qt::UserRole full filename
+1,Qt::CheckStateRole checkbutton UL View
+1,Qt::UserRole overlay, fusion or vector
+2,Qt::CheckStateRole checkbutton UR View
+3,Qt::CheckStateRole checkbutton DL View
+4,Qt::CheckStateRole checkbutton DR View
+5,0 short filename
+5,Qt::UserRole mSlicerManager id*/
//------------------------------------------------------------------------------
vvMainWindow::vvMainWindow():vvMainWindowBase()
-{
+{
setupUi(this); // this sets up the GUI
+ //Qt::WindowFlags flags = windowFlags();
+ //setWindowFlags(flags | Qt::WindowStaysOnTopHint);
+
mInputPathName = "";
mMenuTools = menuTools;
// mMenuSegmentation = menuSegmentation;
this->setContextMenuPolicy(Qt::CustomContextMenu);
contextActions.resize(0);
QAction* actionOpen_new_image = contextMenu.addAction(QIcon(QString::fromUtf8(":/common/icons/fileopen.png")),
- tr("O&pen new Image"));
- actionOpen_new_image->setShortcut(QKeySequence(tr("Ctrl+O")));
+ tr("O&pen new Image"));
connect(actionOpen_new_image,SIGNAL(triggered()),this,SLOT(OpenImages()));
contextActions.push_back(actionOpen_new_image);
contextMenu.addSeparator();
QAction* actionClose_Image = contextMenu.addAction(QIcon(QString::fromUtf8(":/common/icons/exit.png")),
- tr("Close Current Image"));
+ tr("Close Current Image"));
connect(actionClose_Image,SIGNAL(triggered()),this,SLOT(CloseImage()));
contextActions.push_back(actionClose_Image);
QAction* actionReload_image = contextMenu.addAction(QIcon(QString::fromUtf8(":/common/icons/rotateright.png")),
- tr("Reload Current Image"));
+ tr("Reload Current Image"));
connect(actionReload_image,SIGNAL(triggered()),this,SLOT(ReloadImage()));
contextActions.push_back(actionReload_image);
QAction* actionSave_image = contextMenu.addAction(QIcon(QString::fromUtf8(":/common/icons/filesave.png")),
- tr("Save Current Image"));
+ tr("Save Current Image"));
connect(actionSave_image,SIGNAL(triggered()),this,SLOT(SaveAs()));
contextActions.push_back(actionSave_image);
QAction* actionSave_state = contextMenu.addAction(QIcon(QString::fromUtf8(":/common/icons/filesave.png")),
- tr("Save Current State"));
+ tr("Save Current State"));
connect(actionSave_state,SIGNAL(triggered()),this,SLOT(SaveCurrentState()));
contextActions.push_back(actionSave_state);
QAction* actionRead_state = contextMenu.addAction(QIcon(QString::fromUtf8(":/common/icons/filesave.png")),
- tr("Read Saved State"));
+ tr("Read Saved State"));
connect(actionRead_state,SIGNAL(triggered()),this,SLOT(ReadSavedState()));
contextActions.push_back(actionRead_state);
contextMenu.addAction(actionAdd_fusion_image);
contextActions.push_back(actionAdd_fusion_image);
+#ifdef CLITK_EXPERIMENTAL
+ contextMenu.addAction(actionAdd_USSequence_toCT);
+ contextActions.push_back(actionAdd_USSequence_toCT);
+#endif
+
+
contextMenu.addSeparator();
QAction* actionResetMatrix = contextMenu.addAction(QIcon(QString::fromUtf8(":/common/icons/identity.png")),
- tr("Reset transformation to identity"));
+ tr("Reset transformation to identity"));
connect(actionResetMatrix, SIGNAL(triggered()), this,SLOT(ResetTransformationToIdentity()));
- // TRIAL DS
- /*
- QMenu * m = new QMenu(menubar);
- m->setTitle("TOTO");
- // m->setObjectName(QString::fromUtf8("TOTOTO"));
- contextMenu.addMenu(m);
- QAction * a = m->addAction(QIcon(QString::fromUtf8(":/common/icons/GPSup.png")),
- tr("BIDON"));
- QAction * b = m->addAction(QIcon(QString::fromUtf8(":/common/icons/GPSup.png")),
- tr("BIDON2"));
- m->addAction(a);
- m->addAction(b);
- connect(a,SIGNAL(triggered()),this,SLOT(AddFusionImage()));
- */
-
//init the DataTree
mSlicerManagers.resize(0);
actionSave_As->setEnabled(0);
actionAdd_VF_to_current_Image->setEnabled(0);
actionAdd_fusion_image->setEnabled(0);
+ actionAdd_USSequence_toCT->setEnabled(0);
//init the sliders
verticalSliders.push_back(NOVerticalSlider);
connect(actionWarp_image_with_vector_field,SIGNAL(triggered()),this,SLOT(WarpImage()));
connect(actionLoad_images,SIGNAL(triggered()),this,SLOT(OpenImages()));
connect(actionOpen_Dicom,SIGNAL(triggered()),this,SLOT(OpenDicom()));
- connect(actionOpen_Dicom_Struct,SIGNAL(triggered()),this,SLOT(OpenDCStructContour()));
+ // connect(actionOpen_Dicom_Struct,SIGNAL(triggered()),this,SLOT(OpenDCStructContour()));
connect(actionOpen_VTK_contour,SIGNAL(triggered()),this,SLOT(OpenVTKContour()));
connect(actionOpen_Multiple_Images_As_One,SIGNAL(triggered()),this,SLOT(MergeImages()));
connect(actionSlice_Image_As_Multiple_Images,SIGNAL(triggered()),this,SLOT(SliceImages()));
connect(actionExit,SIGNAL(triggered()),this,SLOT(close()));
connect(actionAdd_VF_to_current_Image,SIGNAL(triggered()),this,SLOT(OpenField()));
connect(actionAdd_fusion_image,SIGNAL(triggered()),this,SLOT(SelectFusionImage()));
- connect(actionAdd_overlay_image_to_current_image,SIGNAL(triggered()), this,SLOT(SelectOverlayImage())); connect(actionNavigation_Help,SIGNAL(triggered()),this,SLOT(ShowHelpDialog()));
+ connect(actionAdd_overlay_image_to_current_image,SIGNAL(triggered()), this,SLOT(SelectOverlayImage()));
+ connect(actionAdd_USSequence_toCT,SIGNAL(triggered()), this,SLOT(SelectFusionSequence()));
+ connect(actionNavigation_Help,SIGNAL(triggered()),this,SLOT(ShowHelpDialog()));
+
+ QShortcut *shortcutHelp = new QShortcut(QKeySequence(QKeySequence::HelpContents),this);
+ shortcutHelp->setContext(Qt::ApplicationShortcut);
+ QObject::connect(shortcutHelp, SIGNAL(activated()), this, SLOT(ShowHelpDialog()));
+
connect(actionDocumentation,SIGNAL(triggered()),this,SLOT(ShowDocumentation()));
connect(actionRegister_vv,SIGNAL(triggered()),this,SLOT(PopupRegisterForm()));
+ connect(overlayPanel, SIGNAL(FusionSequenceCorrespondancesButtonPressed()), this, SLOT(SelectFusionSequenceCorrespondances()));
+
+
///////////////////////////////////////////////
connect(actionSegmentation,SIGNAL(triggered()),this,SLOT(SegmentationOnCurrentImage()));
connect(actionSurface_Viewer,SIGNAL(triggered()),this,SLOT(SurfaceViewerLaunch()));
connect(DataTree,SIGNAL(itemSelectionChanged()),this,SLOT(ImageInfoChanged()));
connect(DataTree,SIGNAL(itemClicked(QTreeWidgetItem*, int)),this,
- SLOT(DisplayChanged(QTreeWidgetItem*, int)));
+ SLOT(DisplayChanged(QTreeWidgetItem*, int)));
connect(viewButton,SIGNAL(clicked()),this, SLOT(ChangeViewMode()) );
connect(windowSpinBox,SIGNAL(editingFinished()),this,SLOT(WindowLevelEdited()));
connect(linkPanel,SIGNAL(removeLink(QString,QString)),this,SLOT(RemoveLink(QString,QString)));
connect(overlayPanel,SIGNAL(VFPropertyUpdated(int,int,int,int,double,double,double)),this,SLOT(SetVFProperty(int,int,int,int,double,double,double)));
connect(overlayPanel,SIGNAL(OverlayPropertyUpdated(int,int,double,double)),
- this,SLOT(SetOverlayProperty(int,int,double,double)));
+ this,SLOT(SetOverlayProperty(int,int,double,double)));
connect(overlayPanel,SIGNAL(FusionPropertyUpdated(int,int,int,double,double, bool)),
- this,SLOT(SetFusionProperty(int,int,int,double,double, bool)));
+ this,SLOT(SetFusionProperty(int,int,int,double,double, bool)));
connect(landmarksPanel,SIGNAL(UpdateRenderWindows()),this,SLOT(UpdateRenderWindows()));
+ connect(landmarksPanel,SIGNAL(SelectedPointChanged()),this,SLOT(GoToLandmark()));
+
+ connect(overlayPanel,SIGNAL(FusionSequencePropertyUpdated(int, bool, unsigned int, bool)),
+ this,SLOT(SetFusionSequenceProperty(int, bool,unsigned int, bool)));
+
playMode = 0;//pause
mFrameRate = 10;
SOViewWidget->hide();
SEViewWidget->hide();
+#ifdef Q_OS_OSX
+ disableGLHiDPI(NOViewWidget->winId());
+ disableGLHiDPI(NEViewWidget->winId());
+ disableGLHiDPI(SOViewWidget->winId());
+ disableGLHiDPI(SEViewWidget->winId());
+#endif
+
//Recently opened files
std::list<std::string> recent_files = GetRecentlyOpenedImages();
recentlyOpenedFilesMenu=NULL;
vvToolManager::GetInstance()->InsertToolsInMenu(this);
vvToolManager::GetInstance()->EnableToolsInMenu(this, false);
+//#ifndef CLITK_EXPERIMENTAL
+//#define CLITK_EXPERIMENTAL 0
+//#endif
+#ifdef CLITK_EXPERIMENTAL
if (!CLITK_EXPERIMENTAL)
menuExperimental->menuAction()->setVisible(false);
-
+#endif
QTimer * timerMemory = new QTimer(this);
//timerMemory->setInterval(5);
connect(timerMemory, SIGNAL(timeout()), this, SLOT(UpdateMemoryUsage()));
timerMemory->start(2000);
}
+
//------------------------------------------------------------------------------
void vvMainWindow::show()
-{
+{
vvMainWindowBase::show();
PopupRegisterForm(true);
}
//------------------------------------------------------------------------------
void vvMainWindow::UpdateMemoryUsage()
-{
+{
// clitk::PrintMemory(true);
if (clitk::GetMemoryUsageInMb() == 0) infoPanel->setMemoryInMb("NA");
else infoPanel->setMemoryInMb(QString::number(clitk::GetMemoryUsageInMb())+" MiB");
//------------------------------------------------------------------------------
void vvMainWindow::createRecentlyOpenedFilesMenu()
-{
+{
recentlyOpenedFilesMenu = new QMenu("Recently opened files...");
recentlyOpenedFilesMenu->setIcon(QIcon(QString::fromUtf8(":/common/icons/open.png")));
menuFile->insertMenu(actionOpen_Image_With_Time,recentlyOpenedFilesMenu);
//------------------------------------------------------------------------------
void vvMainWindow::updateRecentlyOpenedFilesMenu(const std::list<std::string> &recent_files)
-{
+{
if(recentlyOpenedFilesMenu==NULL) {
createRecentlyOpenedFilesMenu();
} else {
//------------------------------------------------------------------------------
void vvMainWindow::ComputeMidPosition()
-{
+{
bool ok;
int index=GetSlicerIndexFromItem(DataTree->selectedItems()[0]);
- int ref = QInputDialog::getInteger(this,"Chose reference phase","Reference phase",0,0,\
- mSlicerManagers[index]->GetImage()->GetVTKImages().size()-1,1,&ok);
+ int ref = QInputDialog::getInt(this,"Chose reference phase","Reference phase",0,0,\
+mSlicerManagers[index]->GetImage()->GetVTKImages().size()-1,1,&ok);
if (ok) {
vvMidPosition midp;
midp.slicer_manager = mSlicerManagers[index];
//------------------------------------------------------------------------------
void vvMainWindow::AddContour(int image_index, vvMesh::Pointer contour, bool propagation)
-{
+{
QTreeWidgetItem *item = new QTreeWidgetItem();
item->setData(0,Qt::UserRole,"filename.vtk");
item->setData(1,Qt::UserRole,tr("contour"));
cButton->setToolTip(tr("close image"));
cButton->setIcon(QIcon(QString::fromUtf8(":/common/icons/exit.png")));
connect(cButton,SIGNAL(clickedInto(QTreeWidgetItem*, int)),
- this,SLOT(CloseImage(QTreeWidgetItem*, int)));
+ this,SLOT(CloseImage(QTreeWidgetItem*, int)));
QTreePushButton* rButton = new QTreePushButton;
rButton->setItem(item);
//------------------------------------------------------------------------------
void vvMainWindow::OpenVTKContour()
-{
+{
if (mSlicerManagers.size() > 0) {
QString Extensions = "Images ( *.vtk *.obj)";
Extensions += ";;All Files (*)";
//------------------------------------------------------------------------------
void vvMainWindow::AddDCStructContour(int index, QString file)
-{
- vvMeshReader reader;
- reader.SetFilename(file.toStdString());
- vvStructSelector selector;
- selector.SetStructures(reader.GetROINames());
- if (!mSlicerManagers[index]->GetVF().IsNull())
- selector.EnablePropagationCheckBox();
- if (selector.exec()) {
- QApplication::setOverrideCursor(QCursor(Qt::WaitCursor));
- reader.SetSelectedItems(selector.getSelectedItems());
- reader.SetImage(mSlicerManagers[index]->GetImage());
- if (selector.PropagationEnabled())
- reader.SetPropagationVF(mSlicerManagers[index]->GetVF());
- reader.Update();
- std::vector<vvMesh::Pointer> contours=reader.GetOutput();
- for (std::vector<vvMesh::Pointer>::iterator i=contours.begin();
- i!=contours.end(); i++)
- AddContour(index,*i,selector.PropagationEnabled());
- QApplication::restoreOverrideCursor();
- }
+{
+ vvMeshReader reader;
+ reader.SetFilename(file.toStdString());
+ vvStructSelector selector;
+ selector.SetStructures(reader.GetROINames());
+ if (!mSlicerManagers[index]->GetVF().IsNull())
+ selector.EnablePropagationCheckBox();
+ if (selector.exec()) {
+ QApplication::setOverrideCursor(QCursor(Qt::WaitCursor));
+ reader.SetSelectedItems(selector.getSelectedItems());
+ reader.SetImage(mSlicerManagers[index]->GetImage());
+ if (selector.PropagationEnabled())
+ reader.SetPropagationVF(mSlicerManagers[index]->GetVF());
+ reader.Update();
+ std::vector<vvMesh::Pointer> contours=reader.GetOutput();
+ for (std::vector<vvMesh::Pointer>::iterator i=contours.begin();
+ i!=contours.end(); i++)
+ AddContour(index,*i,selector.PropagationEnabled());
+ QApplication::restoreOverrideCursor();
+ }
}
//------------------------------------------------------------------------------
void vvMainWindow::OpenDCStructContour()
-{
+{
if (mSlicerManagers.size() > 0) {
QString Extensions = "Dicom Files ( *.dcm RS*)";
Extensions += ";;All Files (*)";
//------------------------------------------------------------------------------
void vvMainWindow::ComputeDeformableRegistration()
-{
+{
if (mSlicerManagers.size() > 0) {
int index = GetSlicerIndexFromItem(DataTree->selectedItems()[0]);
vvDeformationDialog dialog(index,mSlicerManagers);
//------------------------------------------------------------------------------
void vvMainWindow::WarpImage()
-{
+{
int index = GetSlicerIndexFromItem(DataTree->selectedItems()[0]);
if (!mSlicerManagers[index]->GetVF().IsNull()) {
bool ok;
- int ref = QInputDialog::getInteger(this,"Chose reference phase","Reference phase",0,0,\
- mSlicerManagers[index]->GetImage()->GetVTKImages().size()-1,1,&ok);
+ int ref = QInputDialog::getInt(this,"Chose reference phase","Reference phase",0,0,\
+ mSlicerManagers[index]->GetImage()->GetVTKImages().size()-1,1,&ok);
if (ok) {
WarpImage(mSlicerManagers[index],ref);
}
//------------------------------------------------------------------------------
void vvMainWindow::WarpImage(vvSlicerManager* selected_slicer,int reference_phase)
-{
+{
if (!selected_slicer->GetVF().IsNull()) {
QApplication::setOverrideCursor(QCursor(Qt::WaitCursor));
QFileInfo info(selected_slicer->GetFileName().c_str());
vvImageWarp warp(selected_slicer->GetImage(),selected_slicer->GetVF(),
- reference_phase,this);
+ reference_phase,this);
if (warp.ComputeWarpedImage()) {
AddImage(warp.GetWarpedImage(),info.path().toStdString()+"/"+info.completeBaseName().toStdString()+"_warped.mhd");
AddImage(warp.GetDiffImage() ,info.path().toStdString()+"/"+info.completeBaseName().toStdString()+"_diff.mhd");
//------------------------------------------------------------------------------
vvMainWindow::~vvMainWindow()
-{
+{
for (unsigned int i = 0; i < mSlicerManagers.size(); i++) {
if (mSlicerManagers[i] != NULL)
delete mSlicerManagers[i];
}
+ delete documentation;
+ delete help_dialog;
+ delete dicomSeriesSelector;
}
//------------------------------------------------------------------------------
//------------------------------------------------------------------------------
QTabWidget * vvMainWindow::GetTab()
-{
+{
return tabWidget;
}
//------------------------------------------------------------------------------
//------------------------------------------------------------------------------
void vvMainWindow::MergeImages()
-{
+{
QString Extensions = EXTENSIONS;
Extensions += ";;All Files (*)";
QStringList files = QFileDialog::getOpenFileNames(this,tr("Merge Images"),mInputPathName,Extensions);
for (int i = 0; i < files.size(); i++) {
itk::ImageIOBase::Pointer reader = itk::ImageIOFactory::CreateImageIO(
- files[i].toStdString().c_str(), itk::ImageIOFactory::ReadMode);
+ files[i].toStdString().c_str(), itk::ImageIOFactory::ReadMode);
reader->SetFileName(files[i].toStdString().c_str());
reader->ReadImageInformation();
if (reader) {
currentSpacing[j] = reader->GetSpacing(j);
currentSize[j] = reader->GetDimensions(j);
} else if (currentDim != reader->GetNumberOfDimensions()
- || currentSpacing[j] != reader->GetSpacing(j)
- || currentSize[j] != (int)reader->GetDimensions(j)
- || currentOrigin[j] != reader->GetOrigin(j)) {
- QString error = "Cannot read file (too different from others ";
- error += files[i].toStdString().c_str();
- QMessageBox::information(this,tr("Reading problem"),error);
- IsOk = false;
- break;
+ || currentSpacing[j] != reader->GetSpacing(j)
+ || currentSize[j] != (int)reader->GetDimensions(j)
+ || currentOrigin[j] != reader->GetOrigin(j)) {
+ QString error = "Cannot read file (too different from others ";
+ error += files[i].toStdString().c_str();
+ QMessageBox::information(this,tr("Reading problem"),error);
+ IsOk = false;
+ break;
}
}
if (IsOk)
//------------------------------------------------------------------------------
void vvMainWindow::SliceImages()
-{
+{
QString Extensions = EXTENSIONS;
Extensions += ";;All Files (*)";
//------------------------------------------------------------------------------
void vvMainWindow::MergeImagesWithTime()
-{
+{
QString Extensions = EXTENSIONS;
Extensions += ";;All Files (*)";
QStringList files = QFileDialog::getOpenFileNames(this,tr("Merge Images With Time"),mInputPathName,Extensions);
//------------------------------------------------------------------------------
void vvMainWindow::OpenDicom()
-{
+{
std::vector<std::string> files;
- std::cout << "dicomSeriesSelector " << std::endl;
+ //std::cout << "dicomSeriesSelector " << std::endl;
if (dicomSeriesSelector->exec() == QDialog::Accepted) {
files = *(dicomSeriesSelector->GetFilenames());
LoadImages(files, vvImageReader::DICOM);
//------------------------------------------------------------------------------
void vvMainWindow::OpenImages()
-{
+{
QString Extensions = EXTENSIONS;
Extensions += ";;All Files (*)";
}
//------------------------------------------------------------------------------
void vvMainWindow::OpenRecentImage()
-{
+{
QAction * caller = qobject_cast<QAction*>(sender());
std::vector<std::string> images;
images.push_back(caller->text().toStdString());
//------------------------------------------------------------------------------
void vvMainWindow::OpenImageWithTime()
-{
+{
QString Extensions = EXTENSIONS;
Extensions += ";;All Files (*)";
//------------------------------------------------------------------------------
void vvMainWindow::LoadImages(std::vector<std::string> files, vvImageReader::LoadedImageType filetype)
-{
+{
//Separate the way to open images and dicoms
int fileSize;
if (filetype == vvImageReader::IMAGE || filetype == vvImageReader::IMAGEWITHTIME)
int numberofsuccesulreads=0;
//open images as 1 or multiples
for (int i = 0; i < fileSize; i++) {
-
progress.SetText("Opening " + files[i]);
progress.SetProgress(i,fileSize);
qApp->processEvents();
// Change filename if an image with the same already exist
int number = GetImageDuplicateFilenameNumber(files[i] + std::string("_slice"));
- if (filetype == vvImageReader::IMAGE || filetype == vvImageReader::IMAGEWITHTIME || filetype == vvImageReader::SLICED)
+ if (filetype == vvImageReader::IMAGE || filetype == vvImageReader::IMAGEWITHTIME || filetype == vvImageReader::SLICED) {
SetImageSucceed = imageManager->SetImage(files[i],filetype, number, j);
- else {
+ } else {
SetImageSucceed = imageManager->SetImages(files,filetype, number);
}
if (!SetImageSucceed) {
QMessageBox::information(this,tr("Reading problem"),error);
delete imageManager;
} else {
+
mSlicerManagers.push_back(imageManager);
//create an item in the tree with good settings
cButton->setToolTip(tr("close image"));
cButton->setIcon(QIcon(QString::fromUtf8(":/common/icons/exit.png")));
connect(cButton,SIGNAL(clickedInto(QTreeWidgetItem*, int)),
- this,SLOT(CloseImage(QTreeWidgetItem*, int)));
+ this,SLOT(CloseImage(QTreeWidgetItem*, int)));
QTreePushButton* rButton = new QTreePushButton;
rButton->setItem(item);
rButton->setToolTip(tr("reload image"));
rButton->setIcon(QIcon(QString::fromUtf8(":/common/icons/rotateright.png")));
connect(rButton,SIGNAL(clickedInto(QTreeWidgetItem*, int)),
- this,SLOT(ReloadImage(QTreeWidgetItem*, int)));
+ this,SLOT(ReloadImage(QTreeWidgetItem*, int)));
DataTree->addTopLevelItem(item);
DataTree->setItemWidget(item, COLUMN_CLOSE_IMAGE, cButton);
linkPanel->addImage(imageManager->GetFileName(), id.toStdString());
connect(mSlicerManagers.back(), SIGNAL(currentImageChanged(std::string)),
- this,SLOT(CurrentImageChanged(std::string)));
+ this,SLOT(CurrentImageChanged(std::string)));
connect(mSlicerManagers.back(), SIGNAL(currentPickedImageChanged(std::string)),
- this, SLOT(CurrentPickedImageChanged(std::string)));
+ this, SLOT(CurrentPickedImageChanged(std::string)));
connect(mSlicerManagers.back(), SIGNAL(UpdatePosition(int, double, double, double, double, double, double, double)),
- this,SLOT(MousePositionChanged(int,double, double, double, double, double, double, double)));
+ this,SLOT(MousePositionChanged(int,double, double, double, double, double, double, double)));
connect(mSlicerManagers.back(), SIGNAL(UpdateVector(int, double, double, double, double)),
- this, SLOT(VectorChanged(int,double,double,double, double)));
+ this, SLOT(VectorChanged(int,double,double,double, double)));
connect(mSlicerManagers.back(), SIGNAL(UpdateOverlay(int, double, double)),
- this, SLOT(OverlayChanged(int,double,double)));
+ this, SLOT(OverlayChanged(int,double,double)));
connect(mSlicerManagers.back(), SIGNAL(UpdateFusion(int, double)),
- this, SLOT(FusionChanged(int,double)));
+ this, SLOT(FusionChanged(int,double)));
connect(mSlicerManagers.back(), SIGNAL(WindowLevelChanged()),
- this,SLOT(WindowLevelChanged()));
+ this,SLOT(WindowLevelChanged()));
connect(mSlicerManagers.back(), SIGNAL(UpdateSlice(int,int)),
- this,SLOT(UpdateSlice(int,int)));
- connect(mSlicerManagers.back(), SIGNAL(UpdateTSlice(int, int)),
- this,SLOT(UpdateTSlice(int, int)));
- connect(mSlicerManagers.back(), SIGNAL(UpdateTSlice(int, int)),
- this,SLOT(ImageInfoChanged()));
+ this,SLOT(UpdateSlice(int,int)));
+ connect(mSlicerManagers.back(), SIGNAL(UpdateTSlice(int, int, int)),
+ this,SLOT(UpdateTSlice(int, int, int)));
+ connect(mSlicerManagers.back(), SIGNAL(UpdateTSlice(int, int, int)),
+ this,SLOT(ImageInfoChanged()));
connect(mSlicerManagers.back(), SIGNAL(UpdateSliceRange(int,int,int,int,int)),
- this,SLOT(UpdateSliceRange(int,int,int,int,int)));
+ this,SLOT(UpdateSliceRange(int,int,int,int,int)));
connect(mSlicerManagers.back(), SIGNAL(UpdateLinkManager(std::string,int,double,double,double,int)),
- this,SLOT(UpdateLinkManager(std::string,int,double,double,double,int)));
+ this,SLOT(UpdateLinkManager(std::string,int,double,double,double,int)));
connect(mSlicerManagers.back(), SIGNAL(UpdateLinkedNavigation(std::string,vvSlicerManager*,vvSlicer*)),
- this,SLOT(UpdateLinkedNavigation(std::string,vvSlicerManager*,vvSlicer*)));
+ this,SLOT(UpdateLinkedNavigation(std::string,vvSlicerManager*,vvSlicer*)));
connect(mSlicerManagers.back(), SIGNAL(ChangeImageWithIndexOffset(vvSlicerManager*,int,int)),
- this,SLOT(ChangeImageWithIndexOffset(vvSlicerManager*,int,int)));
+ this,SLOT(ChangeImageWithIndexOffset(vvSlicerManager*,int,int)));
connect(mSlicerManagers.back(),SIGNAL(LandmarkAdded()),landmarksPanel,SLOT(AddPoint()));
InitSlicers();
numberofsuccesulreads++;
}
}
}
+
if (numberofsuccesulreads) {
NOViewWidget->show();
NEViewWidget->show();
double range[2];
mSlicerManagers.back()->GetImage()->GetFirstVTKImageData()->GetScalarRange(range);
if ((range[0] == 0) && (range[1] == 1)) {
- presetComboBox->setCurrentIndex(5);// binary
+ presetComboBox->setCurrentIndex(WL_BINARY);// binary
} else {
// TODO
}
//------------------------------------------------------------------------------
void vvMainWindow::UpdateTree()
-{
+{
DataTree->resizeColumnToContents(COLUMN_TREE);
DataTree->resizeColumnToContents(COLUMN_UL_VIEW);
DataTree->resizeColumnToContents(COLUMN_UR_VIEW);
//------------------------------------------------------------------------------
void vvMainWindow::CurrentImageChanged(std::string id)
-{
+{
if (id == mCurrentSelectedImageId) return; // Do nothing
int selected = 0;
for (int i = 0; i < DataTree->topLevelItemCount(); i++) {
}
DataTree->topLevelItem(selected)->setSelected(1);
mCurrentSelectedImageId = id;
+
+ landmarksPanel->SetCurrentLandmarks(mSlicerManagers[selected]->GetLandmarks(),
+ mSlicerManagers[selected]->GetTSlice());
+ landmarksPanel->SetCurrentPath(mInputPathName.toStdString());
+ landmarksPanel->SetCurrentImage(mSlicerManagers[selected]->GetFileName().c_str());
+
emit SelectedImageHasChanged(mSlicerManagers[selected]);
}
//------------------------------------------------------------------------------
//------------------------------------------------------------------------------
void vvMainWindow::CurrentPickedImageChanged(std::string id)
-{
+{
if (id == mCurrentPickedImageId) return; // Do nothing
int selected = 0;
for (int i = 0; i < DataTree->topLevelItemCount(); i++) {
//------------------------------------------------------------------------------
void vvMainWindow::ImageInfoChanged()
-{
+{
contextActions[6]->setEnabled(1);
contextActions[5]->setEnabled(1);
actionSave_As->setEnabled(1);
actionAdd_VF_to_current_Image->setEnabled(1);
actionAdd_fusion_image->setEnabled(1);
actionAdd_overlay_image_to_current_image->setEnabled(1);
+ actionAdd_USSequence_toCT->setEnabled(1);
actionNorth_East_Window->setEnabled(1);
actionNorth_West_Window->setEnabled(1);
actionSouth_East_Window->setEnabled(1);
colorMapComboBox->setEnabled(1);
for (int i = 0; i < DataTree->topLevelItem(index)->childCount(); i++) {
if (DataTree->topLevelItem(index)->child(i)->data(1,Qt::UserRole).toString() == "overlay" ||
- DataTree->topLevelItem(index)->child(i)->data(1,Qt::UserRole).toString() == "fusion") {
- colorMapComboBox->setEnabled(0);
- break;
+ DataTree->topLevelItem(index)->child(i)->data(1,Qt::UserRole).toString() == "fusion" ||
+ DataTree->topLevelItem(index)->child(i)->data(1,Qt::UserRole).toString() == "fusionSequence") {
+ colorMapComboBox->setEnabled(0);
+ break;
}
}
QString image = DataTree->selectedItems()[0]->data(COLUMN_IMAGE_NAME,Qt::DisplayRole).toString();
int nframes = mSlicerManagers[index]->GetSlicer(0)->GetTMax();
+
if (nframes > 1 || playMode == 1) {
playButton->setEnabled(1);
frameRateLabel->setEnabled(1);
imageSelected = mSlicerManagers[index]->GetSlicer(0)->GetFusion();
tSlice = mSlicerManagers[index]->GetSlicer(0)->GetFusionTSlice();
}
+ else if (DataTree->selectedItems()[0]->data(1,Qt::UserRole).toString() == "fusionSequence") {
+ imageSelected = mSlicerManagers[index]->GetSlicer(0)->GetFusion();
+ tSlice = mSlicerManagers[index]->GetSlicer(0)->GetFusionTSlice();
+ }
else if (DataTree->selectedItems()[0]->data(1,Qt::UserRole).toString() == "contour") {
imageSelected = mSlicerManagers[index]->GetSlicer(0)->GetImage();
tSlice = mSlicerManagers[index]->GetSlicer(0)->GetTSlice();
NPixel *= inputSize[i];
}
inputSizeInBytes = GetSizeInBytes(imageSelected->GetActualMemorySize()*1000);
-
+
QString dim = QString::number(dimension) + " (";
dim += pixelType + ")";
infoPanel->setFileName(image);
+ std::string creationImageTimeValue("No creation time");
+ itk::ExposeMetaData< std::string > (*imageSelected->GetFirstMetaDataDictionary(), "creationImageTime", creationImageTimeValue);
+ infoPanel->setImageCreationTime(QString(creationImageTimeValue.c_str()));
infoPanel->setDimension(dim);
infoPanel->setSizePixel(GetVectorIntAsString(inputSize));
infoPanel->setSizeMM(GetVectorDoubleAsString(sizeMM));
infoPanel->setOrigin(GetVectorDoubleAsString(origin));
infoPanel->setSpacing(GetVectorDoubleAsString(inputSpacing));
infoPanel->setNPixel(QString::number(NPixel)+" ("+inputSizeInBytes+")");
+
transformation = imageSelected->GetTransform()[tSlice]->GetMatrix();
- infoPanel->setTransformation(Get4x4MatrixDoubleAsString(transformation));
+ infoPanel->setTransformation(clitk::Get4x4MatrixDoubleAsString(transformation).c_str());
landmarksPanel->SetCurrentLandmarks(mSlicerManagers[index]->GetLandmarks(),
- mSlicerManagers[index]->GetSlicer(0)->GetImage()->GetVTKImages().size());
+ mSlicerManagers[index]->GetTSlice());
landmarksPanel->SetCurrentPath(mInputPathName.toStdString());
landmarksPanel->SetCurrentImage(mSlicerManagers[index]->GetFileName().c_str());
}
}
- infoPanel->setFileName(image);
- infoPanel->setDimension(dim);
- infoPanel->setSizePixel(GetVectorIntAsString(inputSize));
- infoPanel->setSizeMM(GetVectorDoubleAsString(sizeMM));
- infoPanel->setOrigin(GetVectorDoubleAsString(origin));
- infoPanel->setSpacing(GetVectorDoubleAsString(inputSpacing));
- infoPanel->setNPixel(QString::number(NPixel)+" ("+inputSizeInBytes+")");
-
- landmarksPanel->SetCurrentLandmarks(mSlicerManagers[index]->GetLandmarks(),
- mSlicerManagers[index]->GetSlicer(0)->GetImage()->GetVTKImages().size());
- landmarksPanel->SetCurrentPath(mInputPathName.toStdString());
- landmarksPanel->SetCurrentImage(mSlicerManagers[index]->GetFileName().c_str());
-
- overlayPanel->getCurrentImageName(mSlicerManagers[index]->GetFileName().c_str());
- for (int i = 0; i < 4; i++) {
- if (DataTree->selectedItems()[0]->data(i+1,Qt::CheckStateRole).toInt() > 0 || i == 3) {
- mSlicerManagers[index]->UpdateInfoOnCursorPosition(i);
- break;
- }
- }
+// infoPanel->setFileName(image);
+// infoPanel->setDimension(dim);
+// infoPanel->setSizePixel(GetVectorIntAsString(inputSize));
+// infoPanel->setSizeMM(GetVectorDoubleAsString(sizeMM));
+// infoPanel->setOrigin(GetVectorDoubleAsString(origin));
+// infoPanel->setSpacing(GetVectorDoubleAsString(inputSpacing));
+// infoPanel->setNPixel(QString::number(NPixel)+" ("+inputSizeInBytes+")");
+//
+// landmarksPanel->SetCurrentLandmarks(mSlicerManagers[index]->GetLandmarks(),
+// mSlicerManagers[index]->GetTSlice());
+// landmarksPanel->SetCurrentPath(mInputPathName.toStdString());
+// landmarksPanel->SetCurrentImage(mSlicerManagers[index]->GetFileName().c_str());
+//
+// overlayPanel->getCurrentImageName(mSlicerManagers[index]->GetFileName().c_str());
+// for (int i = 0; i < 4; i++) {
+// if (DataTree->selectedItems()[0]->data(i+1,Qt::CheckStateRole).toInt() > 0 || i == 3) {
+// mSlicerManagers[index]->UpdateInfoOnCursorPosition(i);
+// break;
+// }
+// }
WindowLevelChanged();
+
slicingPresetComboBox->setCurrentIndex(mSlicerManagers[index]->GetSlicingPreset());
if (mSlicerManagers[index]->GetSlicer(0)->GetVF()) {
overlayPanel->getVFName(mSlicerManagers[index]->GetVFName().c_str());
overlayPanel->getVFProperty(mSlicerManagers[index]->GetSlicer(0)->GetVFSubSampling(),
- mSlicerManagers[index]->GetSlicer(0)->GetVFScale(),
- mSlicerManagers[index]->GetSlicer(0)->GetVFLog());
+ mSlicerManagers[index]->GetSlicer(0)->GetVFScale(),
+ mSlicerManagers[index]->GetSlicer(0)->GetVFLog());
} else {
overlayPanel->getVFName(mSlicerManagers[index]->GetVFName().c_str());
overlayPanel->getVFProperty(-1,-1,-1);
} else {
overlayPanel->getOverlayName(mSlicerManagers[index]->GetOverlayName().c_str());
}
-
+
if (mSlicerManagers[index]->GetSlicer(0)->GetFusion()) {
overlayPanel->getFusionName(mSlicerManagers[index]->GetFusionName().c_str());
} else {
//------------------------------------------------------------------------------
void vvMainWindow::ShowDocumentation()
-{
+{
documentation->show();
}
//------------------------------------------------------------------------------
//------------------------------------------------------------------------------
void vvMainWindow::PopupRegisterForm(bool checkCanPush)
-{
+{
vvRegisterForm* registerForm = new vvRegisterForm(QUrl("http://www.creatis.insa-lyon.fr/~dsarrut/vvregister/write.php"), getVVSettingsPath(), getSettingsOptionFormat());
if(!checkCanPush) {
registerForm->show();
//------------------------------------------------------------------------------
void vvMainWindow::ShowHelpDialog()
-{
+{
help_dialog->show();
}
//------------------------------------------------------------------------------
//------------------------------------------------------------------------------
void vvMainWindow::ChangeViewMode()
-{
+{
typedef struct _SIZE{
QSplitter* splitter;
QList<int> size1, size2;
sizes[3].cols[0] = 1;
sizes[3].cols[1] = 2;
sizes[3].cols[2] = 3;
-
+
int slicer = mSlicerManagers[mCurrentPickedImageIndex]->GetSelectedSlicer();
if (viewMode == 1) {
if (slicer >= 0) {
** the associated Slicer to redraw crosses.
*/
for (unsigned int i = 0; i < mSlicerManagers.size(); i++) {
-// if (DataTree->topLevelItem(i)->data(COLUMN_UL_VIEW,Qt::CheckStateRole).toInt() > 1)
- mSlicerManagers[i]->GetSlicer(0)->Render();
- mSlicerManagers[i]->GetSlicer(1)->Render();
-// if (DataTree->topLevelItem(i)->data(COLUMN_DL_VIEW,Qt::CheckStateRole).toInt() > 1)
- mSlicerManagers[i]->GetSlicer(2)->Render();
- mSlicerManagers[i]->GetSlicer(3)->Render();
+ // if (DataTree->topLevelItem(i)->data(COLUMN_UL_VIEW,Qt::CheckStateRole).toInt() > 1)
+ mSlicerManagers[i]->GetSlicer(0)->Render();
+ mSlicerManagers[i]->GetSlicer(1)->Render();
+ // if (DataTree->topLevelItem(i)->data(COLUMN_DL_VIEW,Qt::CheckStateRole).toInt() > 1)
+ mSlicerManagers[i]->GetSlicer(2)->Render();
+ mSlicerManagers[i]->GetSlicer(3)->Render();
}
}
//------------------------------------------------------------------------------
//------------------------------------------------------------------------------
QString vvMainWindow::GetSizeInBytes(unsigned long size)
-{
+{
QString result = "";// QString::number(size);
//result += " bytes (";
if (size > 1000000000) {
}
//------------------------------------------------------------------------------
-//------------------------------------------------------------------------------
-QString vvMainWindow::Get4x4MatrixDoubleAsString(vtkSmartPointer<vtkMatrix4x4> matrix, const int precision)
-{
- std::ostringstream strmatrix;
-
- // Figure out the number of digits of the integer part of the largest absolute value
- // for each column
- unsigned width[4];
- for (unsigned int j = 0; j < 4; j++){
- double absmax = 0.;
- for (unsigned int i = 0; i < 4; i++)
- absmax = std::max(absmax, vnl_math_abs(matrix->GetElement(i, j)));
- unsigned ndigits = (unsigned)std::max(0.,std::log10(absmax))+1;
- width[j] = precision+ndigits+3;
- }
-
- // Output with correct width, aligned to the right
- for (unsigned int i = 0; i < 4; i++) {
- for (unsigned int j = 0; j < 4; j++) {
- strmatrix.setf(ios::fixed,ios::floatfield);
- strmatrix.precision(precision);
- strmatrix.fill(' ');
- strmatrix.width(width[j]);
- strmatrix << std::right << matrix->GetElement(i, j);
- }
- strmatrix << std::endl;
- }
- QString result = strmatrix.str().c_str();
- return result;
-}
-//------------------------------------------------------------------------------
-
//------------------------------------------------------------------------------
QString vvMainWindow::GetVectorDoubleAsString(std::vector<double> vectorDouble)
-{
+{
QString result;
for (unsigned int i= 0; i < vectorDouble.size(); i++) {
if (i != 0)
//------------------------------------------------------------------------------
QString vvMainWindow::GetVectorIntAsString(std::vector<int> vectorInt)
-{
+{
QString result;
for (unsigned int i= 0; i < vectorInt.size(); i++) {
if (i != 0)
//------------------------------------------------------------------------------
//------------------------------------------------------------------------------
+//this actually returns the SlicerManager index!
int vvMainWindow::GetSlicerIndexFromItem(QTreeWidgetItem* item)
-{
+{
QString id = item->data(COLUMN_IMAGE_NAME,Qt::UserRole).toString();
for (int i = 0; i < DataTree->topLevelItemCount(); i++) {
if (DataTree->topLevelItem(i)->data(COLUMN_IMAGE_NAME,Qt::UserRole).toString() == id)
//------------------------------------------------------------------------------
QTreeWidgetItem* vvMainWindow::GetItemFromSlicerManager(vvSlicerManager* sm)
-{
+{
QString id = sm->GetId().c_str();
for (int i = 0; i < DataTree->topLevelItemCount(); i++) {
if (DataTree->topLevelItem(i)->data(COLUMN_IMAGE_NAME,Qt::UserRole).toString() == id)
//------------------------------------------------------------------------------
void vvMainWindow::DisplayChanged(QTreeWidgetItem *clickedItem, int column)
-{
+{
if ( column >= COLUMN_CLOSE_IMAGE || column <= 0)
return;
clickedParentItem->setData(column, Qt::CheckStateRole, vis?2:0);
// Children
- std::map<std::string, int> actorTypeCounts;
+ std::map<std::string, int> actorTypeCounts;
for (int iChild = 0; iChild < clickedParentItem->childCount(); iChild++) {
QTreeWidgetItem* currentChildItem = clickedParentItem->child(iChild);
std::string actorType = currentChildItem->data(1,Qt::UserRole).toString().toStdString();
//------------------------------------------------------------------------------
void vvMainWindow::InitSlicers()
-{
+{
if (mSlicerManagers.size()) {
mSlicerManagers.back()->GenerateDefaultLookupTable();
-
mSlicerManagers.back()->SetSlicerWindow(0,NOViewWidget->GetRenderWindow());
mSlicerManagers.back()->SetSlicerWindow(1,NEViewWidget->GetRenderWindow());
mSlicerManagers.back()->SetSlicerWindow(2,SOViewWidget->GetRenderWindow());
mSlicerManagers.back()->SetSlicerWindow(3,SEViewWidget->GetRenderWindow());
+#if VTK_MAJOR_VERSION <= 5
+ mSlicerManagers.back()->Render(); // SR: displayed #slice is wrong without this / TB: With VTK6 and multiple images, all slicers are updated, not only the first
+#endif
}
}
//------------------------------------------------------------------------------
void vvMainWindow::InitDisplay()
-{
+{
if (mSlicerManagers.size()) {
//BE CAREFUL : this is absolutely necessary to set the interactor style
//in order to have the same style instanciation for all SlicerManagers in
bool AlreadySelected = false;
for (int i = 0; i < DataTree->topLevelItemCount(); i++) {
mSlicerManagers[i]->SetInteractorStyleNavigator(j,style);
-
//select the image only if previous are not selected
if (DataTree->topLevelItem(i)->data(j+1,Qt::CheckStateRole).toInt() > 1) {
mSlicerManagers[i]->UpdateSlicer(j,1);
AlreadySelected = true;
} else if (i == DataTree->topLevelItemCount()-1 && !AlreadySelected) {
- if (DataTree->selectedItems().size() == 0)
+ if (DataTree->selectedItems().size() == 0) {
DataTree->topLevelItem(i)->setSelected(1);
+ }
DataTree->topLevelItem(i)->setData(j+1,Qt::CheckStateRole,2);
mSlicerManagers[i]->UpdateSlicer(j,1);
DisplaySliders(i,j);
//------------------------------------------------------------------------------
void vvMainWindow::DisplaySliders(int slicer, int window)
-{
+{
if(!mSlicerManagers[slicer]->GetSlicer(window)->GetRenderer()->GetDraw())
return;
//------------------------------------------------------------------------------
void vvMainWindow::CloseImage(QTreeWidgetItem* item, int column)
-{
+{
int index = GetSlicerIndexFromItem(item);
if (DataTree->topLevelItem(index) != item) {
QString warning = "Do you really want to close the overlay : ";
warning += item->data(COLUMN_IMAGE_NAME,Qt::DisplayRole).toString();
QMessageBox msgBox(QMessageBox::Warning, tr("Close Overlay"),
- warning, 0, this);
+ warning, 0, this);
msgBox.addButton(tr("Close"), QMessageBox::AcceptRole);
msgBox.addButton(tr("Cancel"), QMessageBox::RejectRole);
if (msgBox.exec() == QMessageBox::AcceptRole) {
int overlay_index=0;
for (int child = 0; child < DataTree->topLevelItem(index)->childCount(); child++) {
if (DataTree->topLevelItem(index)->\
- child(child)->data(1,Qt::UserRole).toString().toStdString() == overlay_type)
+ child(child)->data(1,Qt::UserRole).toString().toStdString() == overlay_type)
overlay_index++;
if (DataTree->topLevelItem(index)->child(child) == item) break;
}
+ if (overlay_type=="fusionSequence") {
+ //removing the overlay sequence in a fusion sequence visualization mode
+ //reset the transforms
+ overlayPanel->getFusionSequenceProperty(-1, false, 0, false);
+
+ //unlink and untie the slicer managers
+ RemoveLink(mSlicerManagers[index]->GetId().c_str(), mSlicerManagers[mSlicerManagers[index]->GetFusionSequenceIndexOfLinkedManager()]->GetId().c_str());
+ mSlicerManagers[index]->SetFusionSequenceInvolvmentCode(-1);
+ mSlicerManagers[mSlicerManagers[index]->GetFusionSequenceIndexOfLinkedManager()]->SetFusionSequenceInvolvmentCode(-1);
+ for (unsigned i=0 ; i<4 ; i++) {
+ mSlicerManagers[index]->GetSlicer(i)->SetFusionSequenceCode(-1);
+ mSlicerManagers[mSlicerManagers[index]->GetFusionSequenceIndexOfLinkedManager()]->GetSlicer(i)->SetFusionSequenceCode(-1);
+ }
+
+ }
mSlicerManagers[index]->RemoveActor(overlay_type, overlay_index-1);
mSlicerManagers[index]->SetColorMap(0);
DataTree->topLevelItem(index)->takeChild(DataTree->topLevelItem(index)->indexOfChild(item));
warning += item->data(COLUMN_IMAGE_NAME,Qt::DisplayRole).toString();
warning += "\nThis is the last image, you're about to close vv !!!";
QMessageBox msgBox(QMessageBox::Warning, tr("Close Image"),
- warning, 0, this);
+ warning, 0, this);
msgBox.addButton(tr("Close vv"), QMessageBox::AcceptRole);
msgBox.addButton(tr("Cancel"), QMessageBox::RejectRole);
if (msgBox.exec() == QMessageBox::AcceptRole) {
QString warning = "Do you really want to close the image : ";
warning += item->data(COLUMN_IMAGE_NAME,Qt::DisplayRole).toString();
QMessageBox msgBox(QMessageBox::Warning, tr("Close Image"),
- warning, 0, this);
+ warning, 0, this);
msgBox.addButton(tr("Close"), QMessageBox::AcceptRole);
msgBox.addButton(tr("Cancel"), QMessageBox::RejectRole);
if (msgBox.exec() == QMessageBox::AcceptRole) {
for (int i = 0; i < index; i++) {
Manageriter++;
}
+ //if the slicer manager was involved in a fusion sequence visualization...
+ if ( mSlicerManagers[index]->IsInvolvedInFusionSequence() ) {
+ //in both cases, close the overlay: find it... and close it
+ //ideally, I should duplicate the code, and avoid calling CloseImage, since this pops up another interactive box
+ QTreeWidgetItem* overlayItem;
+ if (mSlicerManagers[index]->IsMainSequenceOfFusionSequence()) {
+ for (unsigned i=0 ; i<item->childCount() ; i++) {
+ overlayItem = item->child(i);
+ this->CloseImage( overlayItem, 0 );
+ }
+ }
+ else {
+ QTreeWidgetItem* linkedItem = this->GetItemFromSlicerManager( mSlicerManagers[mSlicerManagers[index]->GetFusionSequenceIndexOfLinkedManager()] );
+ for (unsigned i=0 ; i<linkedItem->childCount() ; i++) {
+ overlayItem = linkedItem->child(i);
+ this->CloseImage( overlayItem, 0 );
+ }
+ }
+
+ /* -- this is normally already done when closing the overlay.
+ //reset the transforms
+ overlayPanel->getFusionSequenceProperty(-1, false, 0, false);
+
+ //unlink and untie the slicer managers
+ RemoveLink(mSlicerManagers[index]->GetId().c_str(), mSlicerManagers[mSlicerManagers[index]->GetFusionSequenceIndexOfLinkedManager()]->GetId().c_str());
+ mSlicerManagers[index]->SetFusionSequenceInvolvmentCode(-1);
+ mSlicerManagers[mSlicerManagers[index]->GetFusionSequenceIndexOfLinkedManager()]->SetFusionSequenceInvolvmentCode(-1);
+ for (unsigned i=0 ; i<4 ; i++) {
+ mSlicerManagers[index]->GetSlicer(i)->SetFusionSequenceCode(-1);
+ mSlicerManagers[mSlicerManagers[index]->GetFusionSequenceIndexOfLinkedManager()]->GetSlicer(i)->SetFusionSequenceCode(-1);
+ }
+ */
+ }
+
linkPanel->removeImage(index);
mSlicerManagers[index]->RemoveActors();
+
+ //remove the slicer manager
delete mSlicerManagers[index];
mSlicerManagers.erase(Manageriter);
//------------------------------------------------------------------------------
void vvMainWindow::ReloadImage(QTreeWidgetItem* item, int column)
-{
+{
// int index = GetSlicerIndexFromItem(item);
// QApplication::setOverrideCursor(QCursor(Qt::WaitCursor));
// if (item->data(1,Qt::UserRole).toString() == "vector")
int index = GetSlicerIndexFromItem(item);
QApplication::setOverrideCursor(QCursor(Qt::WaitCursor));
QString role=item->data(1,Qt::UserRole).toString();
- if ( role == "vector"){
+ if ( role == "vector") {
mSlicerManagers[index]->ReloadVF();
}
- else if (role == "overlay"){
+ else if (role == "overlay") {
mSlicerManagers[index]->ReloadOverlay();
}
- else if (role == "fusion"){
+ else if (role == "fusion") {
mSlicerManagers[index]->ReloadFusion();
}
- else{
+ else if (role == "fusionSequence") {
+ //both versions of the secondary sequence must be updated.
+ mSlicerManagers[index]->ReloadFusionSequence();
+ mSlicerManagers[mSlicerManagers[index]->GetFusionSequenceIndexOfLinkedManager()]->Reload();
+ }
+ else {
mSlicerManagers[index]->Reload();
+ //if we update the secondary sequence, then the overlay of the main sequence should also be updated
+ if (mSlicerManagers[index]->IsSecondarySequenceOfFusionSequence()) mSlicerManagers[mSlicerManagers[index]->GetFusionSequenceIndexOfLinkedManager()]->ReloadFusionSequence();
}
// Update view and info
ImageInfoChanged();
//------------------------------------------------------------------------------
void vvMainWindow::MousePositionChanged(int visibility,double x, double y, double z, double X, double Y, double Z , double value)
-{
+{
infoPanel->setCurrentInfo(visibility,x,y,z,X,Y,Z,value);
}
//------------------------------------------------------------------------------
//------------------------------------------------------------------------------
void vvMainWindow::VectorChanged(int visibility,double x, double y, double z, double value)
-{
+{
overlayPanel->getCurrentVectorInfo(visibility,x,y,z,value);
}
//------------------------------------------------------------------------------
//------------------------------------------------------------------------------
void vvMainWindow::OverlayChanged(int visibility, double valueOver, double valueRef)
-{
+{
overlayPanel->getCurrentOverlayInfo(visibility,valueOver, valueRef);
}
//------------------------------------------------------------------------------
//------------------------------------------------------------------------------
void vvMainWindow::FusionChanged(int visibility, double value)
-{
+{
overlayPanel->getCurrentFusionInfo(visibility,value);
}
//------------------------------------------------------------------------------
//------------------------------------------------------------------------------
+//called when AddOverlayImage, AddFusionSequence
+//or when UpdateWindowLevel() is called ; when slicerManager emits WindowLevelChanged
+//when ImageInfoChanged() is called
void vvMainWindow::WindowLevelChanged()
-{
+{
// Base image
int index = GetSlicerIndexFromItem(DataTree->selectedItems()[0]);
if(index==-1) return;
// Overlay image
if (mSlicerManagers[index]->GetSlicer(0)->GetOverlay())
overlayPanel->getOverlayProperty(mSlicerManagers[index]->GetOverlayColor(),
- mSlicerManagers[index]->GetLinkOverlayWindowLevel(),
- mSlicerManagers[index]->GetOverlayColorWindow(),
- mSlicerManagers[index]->GetOverlayColorLevel());
+ mSlicerManagers[index]->GetLinkOverlayWindowLevel(),
+ mSlicerManagers[index]->GetOverlayColorWindow(),
+ mSlicerManagers[index]->GetOverlayColorLevel());
else
overlayPanel->getOverlayProperty(-1,0,0.,0.);
- // Fusion image
- if (mSlicerManagers[index]->GetSlicer(0)->GetFusion())
+ // Fusion & SequenceFusion image
+ if (mSlicerManagers[index]->GetSlicer(0)->GetFusion()) {
overlayPanel->getFusionProperty(mSlicerManagers[index]->GetFusionOpacity(),
- mSlicerManagers[index]->GetFusionThresholdOpacity(),
- mSlicerManagers[index]->GetFusionColorMap(),
- mSlicerManagers[index]->GetFusionWindow(),
- mSlicerManagers[index]->GetFusionLevel());
+ mSlicerManagers[index]->GetFusionThresholdOpacity(),
+ mSlicerManagers[index]->GetFusionColorMap(),
+ mSlicerManagers[index]->GetFusionWindow(),
+ mSlicerManagers[index]->GetFusionLevel());
+ if (mSlicerManagers[index]->IsMainSequenceOfFusionSequence()) {
+ overlayPanel->getFusionSequenceProperty(mSlicerManagers[index]->GetFusionSequenceFrameIndex(),
+ mSlicerManagers[index]->GetFusionSequenceSpatialSyncFlag(),
+ mSlicerManagers[index]->GetFusionSequenceNbFrames(),
+ mSlicerManagers[index]->GetFusionSequenceTemporalSyncFlag());
+ }
+ }
+ else if ( mSlicerManagers[index]->IsSecondarySequenceOfFusionSequence() ) {
+ //if the image is involved in a fusion sequence, preserve the overlay panel!
+ int ind = mSlicerManagers[index]->GetFusionSequenceIndexOfLinkedManager();
+ overlayPanel->getFusionProperty(mSlicerManagers[ind]->GetFusionOpacity(),
+ mSlicerManagers[ind]->GetFusionThresholdOpacity(),
+ mSlicerManagers[ind]->GetFusionColorMap(),
+ mSlicerManagers[ind]->GetFusionWindow(),
+ mSlicerManagers[ind]->GetFusionLevel());
+ overlayPanel->getFusionSequenceProperty(mSlicerManagers[ind]->GetFusionSequenceFrameIndex(),
+ mSlicerManagers[ind]->GetFusionSequenceSpatialSyncFlag(),
+ mSlicerManagers[ind]->GetFusionSequenceNbFrames(),
+ mSlicerManagers[ind]->GetFusionSequenceTemporalSyncFlag());
+ }
else
+ {
overlayPanel->getFusionProperty(-1, -1, -1, -1, -1);
+ overlayPanel->getFusionSequenceProperty(-1, false, 0, false);
+ }
}
//------------------------------------------------------------------------------
//------------------------------------------------------------------------------
void vvMainWindow::WindowLevelEdited()
-{
- presetComboBox->setCurrentIndex(6);
+{
+ presetComboBox->setCurrentIndex(WL_USER);
UpdateWindowLevel();
}
//------------------------------------------------------------------------------
//------------------------------------------------------------------------------
void vvMainWindow::SetWindowLevel(double w, double l)
-{
+{
windowSpinBox->setValue(w);
levelSpinBox->setValue(l);
- presetComboBox->setCurrentIndex(6);
+ presetComboBox->setCurrentIndex(WL_USER);
colorMapComboBox->setCurrentIndex(0);
UpdateWindowLevel();
}
//------------------------------------------------------------------------------
void vvMainWindow::UpdateWindowLevel()
-{
+{
if (DataTree->selectedItems().size()) {
- if (presetComboBox->currentIndex() == 7) //For ventilation
+ if (presetComboBox->currentIndex() == WL_VENTILATION) //For ventilation
colorMapComboBox->setCurrentIndex(5);
int index = GetSlicerIndexFromItem(DataTree->selectedItems()[0]);
mSlicerManagers[index]->SetColorWindow(windowSpinBox->value());
//------------------------------------------------------------------------------
void vvMainWindow::UpdateSlicingPreset()
-{
+{
if (DataTree->selectedItems().size()) {
int index = GetSlicerIndexFromItem(DataTree->selectedItems()[0]);
mSlicerManagers[index]->SetSlicingPreset(vvSlicerManager::SlicingPresetType(slicingPresetComboBox->currentIndex()));
//------------------------------------------------------------------------------
void vvMainWindow::UpdateColorMap()
-{
+{
if (DataTree->selectedItems().size()) {
int index = GetSlicerIndexFromItem(DataTree->selectedItems()[0]);
mSlicerManagers[index]->SetColorMap(colorMapComboBox->currentIndex());
}
//------------------------------------------------------------------------------
void vvMainWindow::SwitchWindowLevel()
-{
+{
int index = GetSlicerIndexFromItem(DataTree->selectedItems()[0]);
int window = mSlicerManagers[index]->GetColorWindow();
- presetComboBox->setCurrentIndex(6);
+ presetComboBox->setCurrentIndex(WL_USER);
windowSpinBox->setValue(-window);
UpdateWindowLevel();
}
//------------------------------------------------------------------------------
void vvMainWindow::ApplyWindowLevelToAllImages()
-{
+{
int index = GetSlicerIndexFromItem(DataTree->selectedItems()[0]);
if(index==-1) return;
double window = mSlicerManagers[index]->GetColorWindow();
double level = mSlicerManagers[index]->GetColorLevel();
+ double fusWindow = mSlicerManagers[index]->GetFusionWindow();
+ double fusLevel = mSlicerManagers[index]->GetFusionLevel();
+
+ double overWindow = mSlicerManagers[index]->GetOverlayColorWindow();
+ double overLevel = mSlicerManagers[index]->GetOverlayColorLevel();
+
for (unsigned int i = 0; i < mSlicerManagers.size(); i++) {
if (mSlicerManagers[i] == NULL)
continue;
mSlicerManagers[i]->SetColorWindow(window);
mSlicerManagers[i]->SetColorLevel(level);
- mSlicerManagers[i]->SetPreset(6);
+ mSlicerManagers[i]->SetPreset(WL_USER);
+ mSlicerManagers[i]->SetFusionWindow(fusWindow);
+ mSlicerManagers[i]->SetFusionLevel(fusLevel);
+ mSlicerManagers[i]->SetOverlayColorWindow(overWindow);
+ mSlicerManagers[i]->SetOverlayColorLevel(overLevel);
mSlicerManagers[i]->Render();
}
}
//------------------------------------------------------------------------------
void vvMainWindow::ApplyWindowToSetOfImages(double window, unsigned int indexMin, unsigned int indexMax)
-{
+{
for (unsigned int i = indexMin; i <= indexMax && i < mSlicerManagers.size(); i++) {
if (mSlicerManagers[i] == NULL)
continue;
+ SetWindowLevel(window, mSlicerManagers[i]->GetColorLevel());
mSlicerManagers[i]->SetColorWindow(window);
- mSlicerManagers[i]->SetPreset(6);
+ mSlicerManagers[i]->SetPreset(WL_USER);
mSlicerManagers[i]->Render();
}
}
//------------------------------------------------------------------------------
void vvMainWindow::ApplyLevelToSetOfImages(double level, unsigned int indexMin, unsigned int indexMax)
-{
+{
for (unsigned int i = indexMin; i <= indexMax && i < mSlicerManagers.size(); i++) {
if (mSlicerManagers[i] == NULL)
continue;
+ SetWindowLevel(mSlicerManagers[i]->GetColorWindow(), level);
mSlicerManagers[i]->SetColorLevel(level);
- mSlicerManagers[i]->SetPreset(6);
+ mSlicerManagers[i]->SetPreset(WL_USER);
mSlicerManagers[i]->Render();
}
}
//------------------------------------------------------------------------------
void vvMainWindow::UpdateLinkManager(std::string id, int slicer, double x, double y, double z, int temps)
-{
+{
for (unsigned int i = 0; i < mSlicerManagers.size(); i++) {
if (mSlicerManagers[i]->GetId() == id) {
- //mSlicerManagers[i]->SetTSlice(temps);
mSlicerManagers[i]->GetSlicer(slicer)->SetCurrentPosition(x,y,z,temps);
mSlicerManagers[i]->UpdateViews(0,slicer);
break;
//------------------------------------------------------------------------------
void vvMainWindow::UpdateLinkedNavigation(std::string id, vvSlicerManager * sm, vvSlicer* refSlicer)
-{
+{
for (unsigned int i = 0; i < mSlicerManagers.size(); i++) {
if (id == mSlicerManagers[i]->GetId()) {
mSlicerManagers[i]->UpdateLinkedNavigation(refSlicer);
//------------------------------------------------------------------------------
void vvMainWindow::ShowContextMenu(QPoint point)
-{
+{
if (!DataTree->selectedItems().size()) {
contextActions[1]->setEnabled(0);
contextActions[2]->setEnabled(0);
contextActions[1]->setEnabled(1);
contextActions[2]->setEnabled(
DataTree->itemWidget(DataTree->selectedItems()[0],
- COLUMN_RELOAD_IMAGE)->isEnabled());
+ COLUMN_RELOAD_IMAGE)->isEnabled());
contextActions[3]->setEnabled(1);
contextActions[5]->setEnabled(1);
contextActions[6]->setEnabled(1);
//------------------------------------------------------------------------------
void vvMainWindow::CloseImage()
-{
+{
CloseImage(DataTree->selectedItems()[0],0);
}
//------------------------------------------------------------------------------
//------------------------------------------------------------------------------
void vvMainWindow::ReloadImage()
-{
+{
ReloadImage(DataTree->selectedItems()[0],0);
}
//------------------------------------------------------------------------------
//------------------------------------------------------------------------------
void vvMainWindow::SelectOverlayImage()
-{
+{
int index = GetSlicerIndexFromItem(DataTree->selectedItems()[0]);
- //check if one overlay image is added
- for (int child = 0; child < DataTree->topLevelItem(index)->childCount(); child++)
- if (DataTree->topLevelItem(index)->child(child)->data(1,Qt::UserRole).toString() == "overlay") {
- QString error = "Cannot add more than one compared image\n";
- error += "Please remove first ";
- error += DataTree->topLevelItem(index)->child(child)->data(COLUMN_IMAGE_NAME,Qt::DisplayRole).toString();
- QMessageBox::information(this,tr("Problem adding compared image !"),error);
- return;
- }
+ if (!(CheckAddedImage(index, "overlay")))
+ return;
QString Extensions = EXTENSIONS;
Extensions += ";;All Files (*)";
for (int i = 0; i < files.size(); i++) {
vecFileNames.push_back(files[i].toStdString());
}
+
AddOverlayImage(index,vecFileNames,vvImageReader::IMAGE);
}
//------------------------------------------------------------------------------
+//------------------------------------------------------------------------------
+bool vvMainWindow::CheckAddedImage(int index, QString imageType)
+{
+ //check if one overlay image is added
+ for (int child = 0; child < DataTree->topLevelItem(index)->childCount(); child++)
+ if (DataTree->topLevelItem(index)->child(child)->data(1,Qt::UserRole).toString().compare(imageType) == 0) {
+ QString error = "Cannot add more than one compared image\n";
+ error += "Please remove first ";
+ error += DataTree->topLevelItem(index)->child(child)->data(COLUMN_IMAGE_NAME,Qt::DisplayRole).toString();
+ QMessageBox::information(this,tr("Problem adding compared image !"),error);
+ return false;
+ }
+ return true;
+}
+//------------------------------------------------------------------------------
+
//------------------------------------------------------------------------------
void vvMainWindow::AddOverlayImage(int index, std::vector<std::string> fileNames, vvImageReader::LoadedImageType type)
-{
+{
QString file(fileNames[0].c_str());
if (QFile::exists(file))
{
mInputPathName = itksys::SystemTools::GetFilenamePath(file.toStdString()).c_str();
itk::ImageIOBase::Pointer reader = itk::ImageIOFactory::CreateImageIO(
- file.toStdString().c_str(), itk::ImageIOFactory::ReadMode);
+ file.toStdString().c_str(), itk::ImageIOFactory::ReadMode);
reader->SetFileName(fileNames[0].c_str());
reader->ReadImageInformation();
std::string component = reader->GetComponentTypeAsString(reader->GetComponentType());
item->setData(COLUMN_IMAGE_NAME,Qt::DisplayRole,fileinfo.fileName());
item->setToolTip(COLUMN_IMAGE_NAME, mSlicerManagers[index]->GetListOfAbsoluteFilePathInOneString("overlay").c_str());
qApp->processEvents();
+#if VTK_MAJOR_VERSION > 5
+ for ( unsigned int i = 0; i < mSlicerManagers[index]->GetNumberOfSlicers(); i++)
+ mSlicerManagers[index]->GetSlicer(i)->ForceUpdateDisplayExtent();
+#endif
for (int j = 1; j <= 4; j++) {
item->setData(j,Qt::CheckStateRole,DataTree->topLevelItem(index)->data(j,Qt::CheckStateRole));
cButton->setToolTip(tr("close image"));
cButton->setIcon(QIcon(QString::fromUtf8(":/common/icons/exit.png")));
connect(cButton,SIGNAL(clickedInto(QTreeWidgetItem*, int)),
- this,SLOT(CloseImage(QTreeWidgetItem*, int)));
+ this,SLOT(CloseImage(QTreeWidgetItem*, int)));
QTreePushButton* rButton = new QTreePushButton;
rButton->setItem(item);
rButton->setToolTip(tr("reload image"));
rButton->setIcon(QIcon(QString::fromUtf8(":/common/icons/rotateright.png")));
connect(rButton,SIGNAL(clickedInto(QTreeWidgetItem*, int)),
- this,SLOT(ReloadImage(QTreeWidgetItem*, int)));
+ this,SLOT(ReloadImage(QTreeWidgetItem*, int)));
DataTree->topLevelItem(index)->setExpanded(1);
DataTree->topLevelItem(index)->addChild(item);
//------------------------------------------------------------------------------
void vvMainWindow::AddROI(int index, QString file)
-{
+{
/*
// Get slice manager
mReader->SetInputFilename(filename.toStdString());
mReader->Update(IMAGE);
if (mReader->GetLastError().size() != 0) {
- std::cerr << "Error while reading " << filename.toStdString() << std::endl;
- QString error = "Cannot open file \n";
- error += mReader->GetLastError().c_str();
- QMessageBox::information(this,tr("Reading problem"),error);
- delete mReader;
- return;
+ std::cerr << "Error while reading " << filename.toStdString() << std::endl;
+ QString error = "Cannot open file \n";
+ error += mReader->GetLastError().c_str();
+ QMessageBox::information(this,tr("Reading problem"),error);
+ delete mReader;
+ return;
}
vvImage::Pointer roi = mReader->GetOutput();
//------------------------------------------------------------------------------
void vvMainWindow::SelectFusionImage()
-{
+{
int index = GetSlicerIndexFromItem(DataTree->selectedItems()[0]);
- //check if one fusion image is added
- for (int child = 0; child < DataTree->topLevelItem(index)->childCount(); child++)
- if (DataTree->topLevelItem(index)->child(child)->data(1,Qt::UserRole).toString() == "fusion") {
- QString error = "Cannot add more than one fusion image\n";
- error += "Please remove first ";
- error += DataTree->topLevelItem(index)->child(child)->data(COLUMN_IMAGE_NAME,Qt::DisplayRole).toString();
- QMessageBox::information(this,tr("Problem adding fusion image !"),error);
- return;
- }
+ if (!(CheckAddedImage(index, "fusion")) || !(CheckAddedImage(index, "fusionSequence")))
+ return;
QString Extensions = EXTENSIONS;
Extensions += ";;All Files (*)";
- QString file = QFileDialog::getOpenFileName(this,tr("Load Fusion image"),mInputPathName,Extensions);
- if (!file.isEmpty())
- AddFusionImage(index,file);
+ QStringList files = QFileDialog::getOpenFileNames(this,tr("Load Fusion image"),mInputPathName,Extensions);
+ if (files.isEmpty())
+ return;
+
+ std::vector<std::string> vecFileNames;
+ for (int i = 0; i < files.size(); i++) {
+ vecFileNames.push_back(files[i].toStdString());
+ }
+ AddFusionImage(index,vecFileNames,vvImageReader::IMAGE);
}
//------------------------------------------------------------------------------
//------------------------------------------------------------------------------
void vvMainWindow::ResetTransformationToIdentity()
-{
+{
std::string actorType = DataTree->selectedItems()[0]->data(1,Qt::UserRole).toString().toStdString();
int index = GetSlicerIndexFromItem(DataTree->selectedItems()[0]);
mSlicerManagers[index]->ResetTransformationToIdentity(actorType);
//------------------------------------------------------------------------------
//------------------------------------------------------------------------------
-void vvMainWindow::AddFusionImage(int index, QString file)
-{
+void vvMainWindow::AddFusionImage(int index, std::vector<std::string> fileNames, vvImageReader::LoadedImageType type)
+{
+ QString file(fileNames[0].c_str());
if (QFile::exists(file))
{
mInputPathName = itksys::SystemTools::GetFilenamePath(file.toStdString()).c_str();
itk::ImageIOBase::Pointer reader = itk::ImageIOFactory::CreateImageIO(
- file.toStdString().c_str(), itk::ImageIOFactory::ReadMode);
- reader->SetFileName(file.toStdString().c_str());
+ file.toStdString().c_str(), itk::ImageIOFactory::ReadMode);
+ reader->SetFileName(fileNames[0].c_str());
reader->ReadImageInformation();
std::string component = reader->GetComponentTypeAsString(reader->GetComponentType());
- if (reader) {
- QApplication::setOverrideCursor(QCursor(Qt::WaitCursor));
- vvProgressDialog progress("Opening fusion");
- qApp->processEvents();
+ int dimension = reader->GetNumberOfDimensions();
+ QApplication::setOverrideCursor(QCursor(Qt::WaitCursor));
+ vvProgressDialog progress("Opening fusion");
+ qApp->processEvents();
- std::string filename = itksys::SystemTools::GetFilenameWithoutExtension(file.toStdString()).c_str();
- if (mSlicerManagers[index]->SetFusion(file.toStdString(),
- reader->GetNumberOfDimensions(), component)) {
- //create an item in the tree with good settings
- QTreeWidgetItem *item = new QTreeWidgetItem();
- item->setData(0,Qt::UserRole,file.toStdString().c_str());
- item->setData(1,Qt::UserRole,tr("fusion"));
- QFileInfo fileinfo(filename.c_str()); //Do not show the path
- item->setData(COLUMN_IMAGE_NAME,Qt::DisplayRole,fileinfo.fileName());
- item->setToolTip(COLUMN_IMAGE_NAME, mSlicerManagers[index]->GetListOfAbsoluteFilePathInOneString("fusion").c_str());
- qApp->processEvents();
+ std::string filename = itksys::SystemTools::GetFilenameWithoutExtension(file.toStdString()).c_str();
+ if (mSlicerManagers[index]->SetFusion(fileNames,dimension, component,type)) {
+ //create an item in the tree with good settings
+ QTreeWidgetItem *item = new QTreeWidgetItem();
+ item->setData(0,Qt::UserRole,file.toStdString().c_str());
+ item->setData(1,Qt::UserRole,tr("fusion"));
+ QFileInfo fileinfo(file); //Do not show the path
+ item->setData(COLUMN_IMAGE_NAME,Qt::DisplayRole,fileinfo.fileName());
+ item->setToolTip(COLUMN_IMAGE_NAME, mSlicerManagers[index]->GetListOfAbsoluteFilePathInOneString("fusion").c_str());
+ qApp->processEvents();
+#if VTK_MAJOR_VERSION > 5
+ for ( unsigned int i = 0; i < mSlicerManagers[index]->GetNumberOfSlicers(); i++)
+ mSlicerManagers[index]->GetSlicer(i)->ForceUpdateDisplayExtent();
+#endif
+ for (int j = 1; j <= 4; j++) {
+ item->setData(j,Qt::CheckStateRole,DataTree->topLevelItem(index)->data(j,Qt::CheckStateRole));
+ }
- for (int j = 1; j <= 4; j++) {
- item->setData(j,Qt::CheckStateRole,DataTree->topLevelItem(index)->data(j,Qt::CheckStateRole));
- }
+ //Create the buttons for reload and close
+ qApp->processEvents();
+ QTreePushButton* cButton = new QTreePushButton;
+ cButton->setItem(item);
+ cButton->setColumn(COLUMN_CLOSE_IMAGE);
+ cButton->setToolTip(tr("close image"));
+ cButton->setIcon(QIcon(QString::fromUtf8(":/common/icons/exit.png")));
+ connect(cButton,SIGNAL(clickedInto(QTreeWidgetItem*, int)),
+ this,SLOT(CloseImage(QTreeWidgetItem*, int)));
- //Create the buttons for reload and close
- qApp->processEvents();
- QTreePushButton* cButton = new QTreePushButton;
- cButton->setItem(item);
- cButton->setColumn(COLUMN_CLOSE_IMAGE);
- cButton->setToolTip(tr("close image"));
- cButton->setIcon(QIcon(QString::fromUtf8(":/common/icons/exit.png")));
- connect(cButton,SIGNAL(clickedInto(QTreeWidgetItem*, int)),
- this,SLOT(CloseImage(QTreeWidgetItem*, int)));
+ QTreePushButton* rButton = new QTreePushButton;
+ rButton->setItem(item);
+ rButton->setColumn(COLUMN_RELOAD_IMAGE);
+ rButton->setToolTip(tr("reload image"));
+ rButton->setIcon(QIcon(QString::fromUtf8(":/common/icons/rotateright.png")));
+ connect(rButton,SIGNAL(clickedInto(QTreeWidgetItem*, int)),
+ this,SLOT(ReloadImage(QTreeWidgetItem*, int)));
- QTreePushButton* rButton = new QTreePushButton;
- rButton->setItem(item);
- rButton->setColumn(COLUMN_RELOAD_IMAGE);
- rButton->setToolTip(tr("reload image"));
- rButton->setIcon(QIcon(QString::fromUtf8(":/common/icons/rotateright.png")));
- connect(rButton,SIGNAL(clickedInto(QTreeWidgetItem*, int)),
- this,SLOT(ReloadImage(QTreeWidgetItem*, int)));
+ DataTree->topLevelItem(index)->setExpanded(1);
+ DataTree->topLevelItem(index)->addChild(item);
+ DataTree->setItemWidget(item, COLUMN_CLOSE_IMAGE, cButton);
+ DataTree->setItemWidget(item, COLUMN_RELOAD_IMAGE, rButton);
- DataTree->topLevelItem(index)->setExpanded(1);
- DataTree->topLevelItem(index)->addChild(item);
- DataTree->setItemWidget(item, COLUMN_CLOSE_IMAGE, cButton);
- DataTree->setItemWidget(item, COLUMN_RELOAD_IMAGE, rButton);
+ //set the id of the image
+ QString id = DataTree->topLevelItem(index)->data(COLUMN_IMAGE_NAME,Qt::UserRole).toString();
+ item->setData(COLUMN_IMAGE_NAME,Qt::UserRole,id.toStdString().c_str());
+ UpdateTree();
+ qApp->processEvents();
+ ImageInfoChanged();
+ QApplication::restoreOverrideCursor();
- //set the id of the image
- QString id = DataTree->topLevelItem(index)->data(COLUMN_IMAGE_NAME,Qt::UserRole).toString();
- item->setData(COLUMN_IMAGE_NAME,Qt::UserRole,id.toStdString().c_str());
- UpdateTree();
- qApp->processEvents();
- ImageInfoChanged();
- QApplication::restoreOverrideCursor();
- } else {
- QApplication::restoreOverrideCursor();
- QString error = "Cannot import the new image.\n";
- error += mSlicerManagers[index]->GetLastError().c_str();
- QMessageBox::information(this,tr("Problem reading image !"),error);
- }
+ // Update the display to update, e.g., the sliders
+ for(int i=0; i<4; i++)
+ DisplaySliders(index, i);
} else {
+ QApplication::restoreOverrideCursor();
QString error = "Cannot import the new image.\n";
+ error += mSlicerManagers[index]->GetLastError().c_str();
QMessageBox::information(this,tr("Problem reading image !"),error);
}
+ WindowLevelChanged();
}
else
QMessageBox::information(this,tr("Problem reading Fusion !"),"File doesn't exist!");
}
//------------------------------------------------------------------------------
+//------------------------------------------------------------------------------
+void vvMainWindow::AddLandmarks(int index, std::vector<std::string> files)
+{
+ if (!landmarksPanel->LoadFromFile(files))
+ QMessageBox::information(this,tr("Problem reading Landmarks !"),"File doesn't exist!");
+ landmarksPanel->SetCurrentPath(mInputPathName.toStdString());
+ landmarksPanel->SetCurrentImage(mSlicerManagers[index]->GetFileName().c_str());
+}
//------------------------------------------------------------------------------
void vvMainWindow::OpenField()
-{
+{
int index = GetSlicerIndexFromItem(DataTree->selectedItems()[0]);
- //check if a vector field has already been added
- for (int child = 0; child < DataTree->topLevelItem(index)->childCount(); child++)
- if (DataTree->topLevelItem(index)->child(child)->data(1,Qt::UserRole).toString() == "vector") {
- QString error = "Cannot add more than one vector field\n";
- error += "Please remove first ";
- error += DataTree->topLevelItem(index)->child(child)->data(COLUMN_IMAGE_NAME,Qt::DisplayRole).toString();
- QMessageBox::information(this,tr("Problem adding vector field!"),error);
- return;
- }
+
+ if (!(CheckAddedImage(index, "vector")))
+ return;
- QString Extensions = "Images ( *.mhd)";
- Extensions += ";;Images ( *.mha)";
- Extensions += ";;VF Images ( *.vf)";
- Extensions += ";;nii Images ( *.nii)";
- Extensions += ";;nrrd Images ( *.nrrd)";
- Extensions += ";;nhdr Images ( *.nhdr)";
+ QString Extensions = "Images ( *.mhd *.mha *.vf *.nii *.nrrd *.nhdr)";
+ // Extensions += ";;Images ( *.mha)";
+ // Extensions += ";;VF Images ( *.vf)";
+ // Extensions += ";;nii Images ( *.nii)";
+ // Extensions += ";;nrrd Images ( *.nrrd)";
+ // Extensions += ";;nhdr Images ( *.nhdr)";
Extensions += ";;All Files (*)";
QString file = QFileDialog::getOpenFileName(this,tr("Load deformation field"),mInputPathName,Extensions);
if (!file.isEmpty())
//------------------------------------------------------------------------------
void vvMainWindow::AddFieldEntry(QString filename,int index,bool from_disk)
-{
+{
//create an item in the tree with good settings
QTreeWidgetItem *item = new QTreeWidgetItem();
item->setData(0,Qt::UserRole,filename.toStdString().c_str());
cButton->setToolTip(tr("close vector field"));
cButton->setIcon(QIcon(QString::fromUtf8(":/common/icons/exit.png")));
connect(cButton,SIGNAL(clickedInto(QTreeWidgetItem*, int)),
- this,SLOT(CloseImage(QTreeWidgetItem*, int)));
+ this,SLOT(CloseImage(QTreeWidgetItem*, int)));
QTreePushButton* rButton = new QTreePushButton;
rButton->setItem(item);
rButton->setEnabled(from_disk);
rButton->setIcon(QIcon(QString::fromUtf8(":/common/icons/rotateright.png")));
connect(rButton,SIGNAL(clickedInto(QTreeWidgetItem*, int)),
- this,SLOT(ReloadImage(QTreeWidgetItem*, int)));
+ this,SLOT(ReloadImage(QTreeWidgetItem*, int)));
DataTree->topLevelItem(index)->setExpanded(1);
DataTree->topLevelItem(index)->addChild(item);
//------------------------------------------------------------------------------
void vvMainWindow::AddField(vvImage::Pointer vf,QString file,int index)
-{
+{
QApplication::setOverrideCursor(QCursor(Qt::WaitCursor));
vvSlicerManager* imageManager = mSlicerManagers[index];
if (imageManager->SetVF(vf,file.toStdString())) {
AddFieldEntry(file,index,false);
+#if VTK_MAJOR_VERSION > 5
+ for ( unsigned int i = 0; i < mSlicerManagers[index]->GetNumberOfSlicers(); i++)
+ mSlicerManagers[index]->GetSlicer(i)->ForceUpdateDisplayExtent();
+#endif
} else {
QString error = "Cannot import the vector field for this image.\n";
error += imageManager->GetLastError().c_str();
//------------------------------------------------------------------------------
void vvMainWindow::AddField(QString file,int index)
-{
+{
if (QFile::exists(file)) {
mInputPathName = itksys::SystemTools::GetFilenamePath(file.toStdString()).c_str();
//------------------------------------------------------------------------------
void vvMainWindow::SetVFProperty(int subsampling, int scale, int log, int width, double r, double g, double b)
-{
+{
int index = GetSlicerIndexFromItem(DataTree->selectedItems()[0]);
if (mSlicerManagers[index]->GetSlicer(0)->GetVF()) {
for (int i = 0; i < 4; i++) {
//------------------------------------------------------------------------------
void vvMainWindow::SetOverlayProperty(int color, int linked, double window, double level)
-{
+{
int index = GetSlicerIndexFromItem(DataTree->selectedItems()[0]);
if (mSlicerManagers[index]->GetSlicer(0)->GetOverlay()) {
mSlicerManagers[index]->SetOverlayColor(color);
//------------------------------------------------------------------------------
void vvMainWindow::SetFusionProperty(int opacity, int thresOpacity, int colormap,double window, double level, bool showLegend)
-{
+{
int index = GetSlicerIndexFromItem(DataTree->selectedItems()[0]);
if (mSlicerManagers[index]->GetSlicer(0)->GetFusion()) {
mSlicerManagers[index]->SetFusionColorMap(colormap);
}
//------------------------------------------------------------------------------
+
+//------------------------------------------------------------------------------
+void vvMainWindow::SelectFusionSequence()
+{
+ //get the index of the slicer manager of the main sequence (CT)
+ int index = GetSlicerIndexFromItem(DataTree->selectedItems()[0]);
+
+ if (!(CheckAddedImage(index, "fusion")) || !(CheckAddedImage(index, "fusionSequence")))
+ return;
+
+ QString Extensions = EXTENSIONS;
+ Extensions += ";;All Files (*)";
+ QStringList files = QFileDialog::getOpenFileNames(this,tr("Load Overlay image sequence"),mInputPathName,Extensions);
+ if (files.isEmpty())
+ return;
+
+ std::vector<std::string> vecFileNames;
+ for (int i = 0; i < files.size(); i++) {
+ vecFileNames.push_back(files[i].toStdString());
+ }
+
+ //associate the secondary sequence (US) to the main one
+ AddFusionSequence(index,vecFileNames,vvImageReader::MERGEDWITHTIME);
+}
+//------------------------------------------------------------------------------
+
+
+//------------------------------------------------------------------------------
+void vvMainWindow::SelectFusionSequenceCorrespondances()
+{
+ //make sure the index is right?
+ //in the end, I should attach the temporal data to the right sequence!
+ int index = GetSlicerIndexFromItem(DataTree->selectedItems()[0]);
+ //in case the other sequence got selected, make sure we select the primary sequence
+ if ( (!mSlicerManagers[index]->GetSlicer(0)->GetFusion()) && mSlicerManagers[index]->GetFusionSequenceIndexOfLinkedManager()>=0 ) {
+ index = mSlicerManagers[index]->GetFusionSequenceIndexOfLinkedManager();
+ }
+
+ //open a dialog box to find a file
+ //QString Extensions = EXTENSIONS;
+ QString Extensions = ";;All Files (*)";
+ QString fileName = QFileDialog::getOpenFileName(this,tr("Load respiratory signal for fused sequence"),mInputPathName,Extensions);
+ if (fileName.isNull())
+ return;
+
+ //read it as a vector of values
+ vnl_vector<double> tmpVect;
+
+ std::ifstream file;
+ file.open(fileName.toStdString().c_str());
+ tmpVect.read_ascii(file);
+ file.close();
+
+ //if compatible with the fused image sequence (number of entries = nb of entries in main sequence + nb of entries in joint sequence), enable the temporalSync
+ bool signalOK = true;
+ unsigned nbFrameMain = mSlicerManagers[index]->GetImage()->GetTransform().size();
+ unsigned nbFrameSecondary = mSlicerManagers[index]->GetFusionSequenceNbFrames();
+ std::cout<<"nbFrameMain = "<<nbFrameMain<<", nbFrameSecondary= "<<nbFrameSecondary<<", signal size: "<<tmpVect.size()<<std::endl;
+ std::vector<unsigned> temporalCorrespondances;
+ if ( tmpVect.size() == nbFrameMain + nbFrameSecondary ) {
+ for (unsigned i=0 ; i<tmpVect.size() ; i++) {
+ if (i<nbFrameMain) { //first part of the file: i -> index in secondary seq.
+ if ( tmpVect(i)<nbFrameSecondary ) temporalCorrespondances.push_back(tmpVect(i));
+ else { signalOK=false; break; } //pointing outside the secondary sequence...
+ }
+ else { //first part of the file -> index in secondary seq.
+ if ( tmpVect(i)<nbFrameMain ) temporalCorrespondances.push_back(tmpVect(i));
+ else { signalOK=false; break; } //pointing outside the secondary sequence...
+ }
+ }
+ }
+ else {signalOK=false;}
+ if (!signalOK) {//else, send a message to signal the failure...
+ QString error = "The provided temporal correspondances is invalid - check tooltip.\n";
+ error += "Ignoring file: " + fileName;
+ QMessageBox::information(this,tr("Problem adding temporal correspondances!"),error);
+ return;
+ }
+ else {
+ //for convenience, associate this sequence to both the current slicer manager, and to the linked one
+ mSlicerManagers[index]->SetFusionSequenceCorrespondances(temporalCorrespondances);
+ mSlicerManagers[ mSlicerManagers[index]->GetFusionSequenceIndexOfLinkedManager() ]->SetFusionSequenceCorrespondances(temporalCorrespondances);
+ overlayPanel->enableFusionSequenceTemporalSync();
+ }
+
+}
+//------------------------------------------------------------------------------
+
+
+//------------------------------------------------------------------------------
+//when this function is called index is the slicer manager index corresponding to the main sequence (CT)
+//the files behind fileNames points to the data for the secondary sequence
+void vvMainWindow::AddFusionSequence(int index, std::vector<std::string> fileNames, vvImageReader::LoadedImageType type)
+{
+ QString file(fileNames[0].c_str());
+ if (QFile::exists(file))
+ {
+ mInputPathName = itksys::SystemTools::GetFilenamePath(file.toStdString()).c_str();
+ itk::ImageIOBase::Pointer reader = itk::ImageIOFactory::CreateImageIO(
+ file.toStdString().c_str(), itk::ImageIOFactory::ReadMode);
+ std::sort (fileNames.begin(), fileNames.end());//make sure the files are sorted.
+ reader->SetFileName(fileNames[0].c_str());
+ reader->ReadImageInformation();
+ std::string component = reader->GetComponentTypeAsString(reader->GetComponentType());
+ int dimension = reader->GetNumberOfDimensions();
+ QApplication::setOverrideCursor(QCursor(Qt::WaitCursor));
+ vvProgressDialog progress("Opening " + file.toStdString());
+ qApp->processEvents();
+
+ std::string filename = itksys::SystemTools::GetFilenameWithoutExtension(file.toStdString()).c_str();
+
+ if (mSlicerManagers[index]->SetFusionSequence(fileNames,dimension, component,type)) {
+ //create an item in the tree with good settings
+ QTreeWidgetItem *item = new QTreeWidgetItem();
+ item->setData(0,Qt::UserRole,file.toStdString().c_str());
+ item->setData(1,Qt::UserRole,tr("fusionSequence"));
+
+ QFileInfo fileinfo(file); //Do not show the path
+ item->setData(COLUMN_IMAGE_NAME,Qt::DisplayRole,fileinfo.fileName());
+ item->setToolTip(COLUMN_IMAGE_NAME, mSlicerManagers[index]->GetListOfAbsoluteFilePathInOneString("fusionSequence").c_str());
+ qApp->processEvents();
+#if VTK_MAJOR_VERSION > 5
+ for ( unsigned int i = 0; i < mSlicerManagers[index]->GetNumberOfSlicers(); i++)
+ mSlicerManagers[index]->GetSlicer(i)->ForceUpdateDisplayExtent();
+#endif
+ for (int j = 1; j <= 4; j++) {
+ item->setData(j,Qt::CheckStateRole,DataTree->topLevelItem(index)->data(j,Qt::CheckStateRole));
+ }
+
+ //Create the buttons for reload and close
+ qApp->processEvents();
+ QTreePushButton* cButton = new QTreePushButton;
+ cButton->setItem(item);
+ cButton->setColumn(COLUMN_CLOSE_IMAGE);
+ cButton->setToolTip(tr("close image"));
+ cButton->setIcon(QIcon(QString::fromUtf8(":/common/icons/exit.png")));
+ connect(cButton,SIGNAL(clickedInto(QTreeWidgetItem*, int)),
+ this,SLOT(CloseImage(QTreeWidgetItem*, int)));
+
+ QTreePushButton* rButton = new QTreePushButton;
+ rButton->setItem(item);
+ rButton->setColumn(COLUMN_RELOAD_IMAGE);
+ rButton->setToolTip(tr("reload image"));
+ rButton->setIcon(QIcon(QString::fromUtf8(":/common/icons/rotateright.png")));
+ connect(rButton,SIGNAL(clickedInto(QTreeWidgetItem*, int)),
+ this,SLOT(ReloadImage(QTreeWidgetItem*, int)));
+
+ DataTree->topLevelItem(index)->setExpanded(1);
+ DataTree->topLevelItem(index)->addChild(item);
+ DataTree->setItemWidget(item, COLUMN_CLOSE_IMAGE, cButton);
+ DataTree->setItemWidget(item, COLUMN_RELOAD_IMAGE, rButton);
+
+ //store the original transform matrix
+ int indexParent = GetSlicerIndexFromItem( DataTree->topLevelItem(index) );
+ mSlicerManagers[indexParent]->SetFusionSequenceMainTransformMatrix( mSlicerManagers[indexParent]->GetSlicer(0)->GetImage()->GetTransform()[0]->GetMatrix() );
+
+ //set the id of the image
+ QString id = DataTree->topLevelItem(index)->data(COLUMN_IMAGE_NAME,Qt::UserRole).toString();
+ item->setData(COLUMN_IMAGE_NAME,Qt::UserRole,id.toStdString().c_str());
+ UpdateTree();
+ qApp->processEvents();
+
+ //ImageInfoChanged();
+
+ QApplication::restoreOverrideCursor();
+ // Update the display to update, e.g., the sliders
+ for(int i=0; i<4; i++)
+ DisplaySliders(index, i);
+
+
+ //This loads the secondary sequence (US) as an independent sequence
+ LoadImages(fileNames, type);
+ //reset the transforms to identity
+ //FIX -- and set the thickness of the US slices to a large value (necessary for visualization purposes...)
+ double sp_x, sp_y, sp_z;
+ mSlicerManagers[indexParent]->GetImage()->GetVTKImages()[0]->GetSpacing(sp_x, sp_y, sp_z);
+ sp_z = std::max(sp_x, std::max(sp_y, sp_z)) + 0.5; //
+ for (unsigned i=0 ; i<mSlicerManagers.back()->GetImage()->GetTransform().size() ; i++) {
+ sp_x = mSlicerManagers.back()->GetImage()->GetVTKImages()[i]->GetSpacing()[0];
+ sp_y = mSlicerManagers.back()->GetImage()->GetVTKImages()[i]->GetSpacing()[1];
+ mSlicerManagers.back()->GetImage()->GetVTKImages()[i]->SetSpacing( sp_x, sp_y, sp_z);
+ mSlicerManagers.back()->GetImage()->GetTransform()[i]->Identity();
+ mSlicerManagers.back()->GetImage()->GetTransform()[i]->Update();
+ }
+
+ //automatically link both images...
+ AddLink(mSlicerManagers[indexParent]->GetId().c_str(), mSlicerManagers.back()->GetId().c_str(), false);
+
+ //tie the main and secondary sequences by raising flags and informing each another of their respective SlicerManager indices
+ mSlicerManagers[indexParent]->SetFusionSequenceIndexOfLinkedManager(mSlicerManagers.size()-1);
+ mSlicerManagers[indexParent]->SetFusionSequenceInvolvmentCode(0); //main sequence
+ mSlicerManagers.back()->SetFusionSequenceIndexOfLinkedManager(indexParent);
+ mSlicerManagers.back()->SetFusionSequenceInvolvmentCode(1); //secondary sequence
+ for (unsigned i=0 ; i<4 ; i++) {
+ mSlicerManagers.back()->GetSlicer(i)->SetFusionSequenceCode(1); //flag the slicers of the secondary sequence
+ }
+
+ } else {
+ QApplication::restoreOverrideCursor();
+ QString error = "Cannot import the new image.\n";
+ error += mSlicerManagers[index]->GetLastError().c_str();
+ QMessageBox::information(this,tr("Problem reading image !"),error);
+ }
+ WindowLevelChanged();
+ ImageInfoChanged(); //this internally calls WindowLevelChanged...
+ }
+ else {
+ QMessageBox::information(this,tr("Problem reading fusion sequence !"),"File doesn't exist!");
+ return;
+ }
+
+}
+//------------------------------------------------------------------------------
+
+
+//------------------------------------------------------------------------------
+//fusionSequenceFrameIndex and fusionSequenceNbFrames are relative to the secondary sequence (US)
+void vvMainWindow::SetFusionSequenceProperty(int fusionSequenceFrameIndex, bool spatialSyncFlag, unsigned int fusionSequenceNbFrames, bool temporalSyncFlag)
+{
+ int index = GetSlicerIndexFromItem(DataTree->selectedItems()[0]);
+
+ if (!mSlicerManagers[index]->IsInvolvedInFusionSequence()) return;
+
+ //check if the focus moved to the linked sequence, and in this case, select the master sequence instead
+ if (!mSlicerManagers[index]->IsMainSequenceOfFusionSequence()) {
+ index = mSlicerManagers[index]->GetFusionSequenceIndexOfLinkedManager();
+ }
+ int secondaryIndex = mSlicerManagers[index]->GetFusionSequenceIndexOfLinkedManager();
+ if (secondaryIndex==-1) return; //this should never happen
+ if ( (!mSlicerManagers[index]->IsMainSequenceOfFusionSequence()) ||
+ (!mSlicerManagers[secondaryIndex]->IsSecondarySequenceOfFusionSequence()) )
+ {return;} //this should never happen, raise an exception?
+
+ if (mSlicerManagers[index]->GetSlicer(0)->GetFusion()) {
+
+ //First, if the spatialSync button is unchecked, then reposition the parent sequence (CT) in its original coordinate frame
+ if ( (!spatialSyncFlag) && (mSlicerManagers[index]->GetFusionSequenceSpatialSyncFlag()) ) {
+ for ( unsigned i=0 ; i<mSlicerManagers[index]->GetSlicer(0)->GetImage()->GetTransform().size() ; i++ ) {
+ mSlicerManagers[index]->GetSlicer(0)->GetImage()->GetTransform()[i]->SetMatrix( mSlicerManagers[index]->GetFusionSequenceMainTransformMatrix() );
+ mSlicerManagers[index]->GetSlicer(0)->GetImage()->GetTransform()[i]->Update();
+ }
+
+ for (int i=0; i<mSlicerManagers[index]->GetNumberOfSlicers(); i++) {
+ mSlicerManagers[index]->GetSlicer(i)->ForceUpdateDisplayExtent();
+ mSlicerManagers[index]->GetSlicer(i)->Render();
+ }
+ }
+
+ //then, update the property values in the slicer manager
+ mSlicerManagers[index]->SetFusionSequenceLength(fusionSequenceNbFrames);
+ mSlicerManagers[index]->SetFusionSequenceSpatialSyncFlag(spatialSyncFlag);
+ mSlicerManagers[index]->SetFusionSequenceTemporalSyncFlag(temporalSyncFlag);
+ mSlicerManagers[index]->SetFusionSequenceFrameIndex(fusionSequenceFrameIndex);
+
+ //select the right frame of the US sequence
+ mSlicerManagers[index]->SetFusionSequenceTSlice(fusionSequenceFrameIndex); //here, I should only update the overlayed sequence
+ mSlicerManagers[secondaryIndex]->SetTSlice(fusionSequenceFrameIndex, false); //this should update the secondary sequence (individual version)
+
+ //update the horizontal sliders of the main window
+ overlayPanel->updateFusionSequenceSliderValueFromWindow(fusionSequenceFrameIndex, false);
+
+ if (spatialSyncFlag) { //reslice the CT
+
+ if (temporalSyncFlag) { //do the temporal synchronisation
+ int mainSequenceFrameIndex=0;
+ //estimate the TSlice to set to the CT
+ unsigned nbFramesMain = mSlicerManagers[index]->GetImage()->GetTransform().size();
+ mainSequenceFrameIndex = mSlicerManagers[index]->GetFusionSequenceCorrespondances()[ nbFramesMain + fusionSequenceFrameIndex];
+ //and set it!
+ mSlicerManagers[index]->SetTSlice(mainSequenceFrameIndex, false);
+ //warning, there is a loopback, and modification of the TSlice in main sequence forces an update of the TSlice in secondary, etc...
+ }
+
+
+ //Set the transform matrix of the parent sequence (typically CT / 4DCT)
+ vtkSmartPointer<vtkMatrix4x4> tmpMat = vtkSmartPointer<vtkMatrix4x4>::New();
+ vtkMatrix4x4::Invert( mSlicerManagers[index]->GetFusionSequenceInitialTransformMatrixAtFrame(fusionSequenceFrameIndex), tmpMat );
+ for ( unsigned i=0 ; i<mSlicerManagers[index]->GetSlicer(0)->GetImage()->GetTransform().size() ; i++ ) {
+ mSlicerManagers[index]->GetSlicer(0)->GetImage()->GetTransform()[i]->SetMatrix( mSlicerManagers[index]->GetFusionSequenceMainTransformMatrix() );
+ mSlicerManagers[index]->GetSlicer(0)->GetImage()->GetTransform()[i]->PreMultiply();
+ mSlicerManagers[index]->GetSlicer(0)->GetImage()->GetTransform()[i]->Concatenate( tmpMat );
+ mSlicerManagers[index]->GetSlicer(0)->GetImage()->GetTransform()[i]->Update();
+ }
+
+ for (int i=0; i<mSlicerManagers[index]->GetNumberOfSlicers(); i++) {
+ mSlicerManagers[index]->GetSlicer(i)->ForceUpdateDisplayExtent();
+ mSlicerManagers[index]->GetSlicer(i)->Render();
+ }
+
+ }
+
+ }
+}
+//------------------------------------------------------------------------------
+
+
//------------------------------------------------------------------------------
void vvMainWindow::SaveAs()
-{
+{
if (DataTree->selectedItems()[0]->data(1,Qt::UserRole).toString() == "vector") {
QMessageBox::warning(this,tr("Unsupported type"),tr("Sorry, saving a vector field is unsupported for the moment"));
return;
Extensions += ")";
}
QString fileName = QFileDialog::getSaveFileName(this,
- tr("Save As"),
- mSlicerManagers[index]->GetFileName().c_str(),
- Extensions);
+ tr("Save As"),
+ mSlicerManagers[index]->GetFileName().c_str(),
+ Extensions);
if (!fileName.isEmpty()) {
std::string fileformat = itksys::SystemTools::GetFilenameLastExtension(fileName.toStdString());
if (OutputListeFormat.contains(
- fileformat.c_str())) {
- QApplication::setOverrideCursor(QCursor(Qt::WaitCursor));
- std::string action = "Saving";
- vvProgressDialog progress("Saving "+fileName.toStdString());
- qApp->processEvents();
- vvImageWriter::Pointer writer = vvImageWriter::New();
- writer->SetOutputFileName(fileName.toStdString());
- writer->SetInput(mSlicerManagers[index]->GetImage());
-
- // Check on transform and prompt user
- writer->SetSaveTransform(false);
- bool bId = true;
- for(int i=0; i<4; i++)
- for(int j=0; j<4; j++) {
- // TODO SR and BP: check on the list of transforms and not the first only
- double elt = mSlicerManagers[index]->GetImage()->GetTransform()[0]->GetMatrix()->GetElement(i,j);
- if(i==j && elt!=1.)
- bId = false;
- if(i!=j && elt!=0.)
- bId = false;
- }
- if( !bId ) {
- QString warning = "The image has an associated linear transform. Do you want to save it along?";
- QMessageBox msgBox(QMessageBox::Warning, tr("Save transform"), warning, 0, this);
- msgBox.addButton(tr("Yes"), QMessageBox::AcceptRole);
- msgBox.addButton(tr("No"), QMessageBox::RejectRole);
- if (msgBox.exec() == QMessageBox::AcceptRole)
- writer->SetSaveTransform(true);
- }
+ fileformat.c_str())) {
+ QApplication::setOverrideCursor(QCursor(Qt::WaitCursor));
+ std::string action = "Saving";
+ vvProgressDialog progress("Saving "+fileName.toStdString());
+ qApp->processEvents();
+ vvImageWriter::Pointer writer = vvImageWriter::New();
+ writer->SetOutputFileName(fileName.toStdString());
+ writer->SetInput(mSlicerManagers[index]->GetImage());
+
+ // Check on transform and prompt user
+ writer->SetSaveTransform(false);
+ bool bId = true;
+ for(int i=0; i<4; i++)
+ for(int j=0; j<4; j++) {
+ // TODO SR and BP: check on the list of transforms and not the first only
+ double elt = mSlicerManagers[index]->GetImage()->GetTransform()[0]->GetMatrix()->GetElement(i,j);
+ if(i==j && elt!=1.)
+ bId = false;
+ if(i!=j && elt!=0.)
+ bId = false;
+ }
+ if( !bId ) {
+ QString warning = "The image has an associated linear transform. Do you want to save it along?";
+ QMessageBox msgBox(QMessageBox::Warning, tr("Save transform"), warning, 0, this);
+ msgBox.addButton(tr("Yes"), QMessageBox::AcceptRole);
+ msgBox.addButton(tr("No"), QMessageBox::RejectRole);
+ if (msgBox.exec() == QMessageBox::AcceptRole)
+ writer->SetSaveTransform(true);
+ }
- writer->Update();
- QApplication::restoreOverrideCursor();
- if (writer->GetLastError().size()) {
- QString error = "Saving did not succeed\n";
- error += writer->GetLastError().c_str();
- QMessageBox::information(this,tr("Saving Problem"),error);
- SaveAs();
- }
+ writer->Update();
+ QApplication::restoreOverrideCursor();
+ if (writer->GetLastError().size()) {
+ QString error = "Saving did not succeed\n";
+ error += writer->GetLastError().c_str();
+ QMessageBox::information(this,tr("Saving Problem"),error);
+ SaveAs();
+ }
} else {
QString error = fileformat.c_str();
if (error.isEmpty())
//------------------------------------------------------------------------------
void vvMainWindow::SaveCurrentState()
-{
+{
QString Extensions = "XML Files(*.xml)";
QString fileName = QFileDialog::getSaveFileName(this,
- tr("Save Current Window State"),
- "",
- Extensions);
-
+ tr("Save Current Window State"),
+ "",
+ Extensions);
+
SaveCurrentStateAs(fileName.toStdString());
}
//------------------------------------------------------------------------------
//------------------------------------------------------------------------------
void vvMainWindow::SaveCurrentStateAs(const std::string& stateFile)
-{
+{
vvSaveState save_state;
save_state.Run(this, stateFile);
}
//------------------------------------------------------------------------------
void vvMainWindow::ReadSavedState()
-{
+{
QString Extensions = "XML Files(*.xml)";
QString fileName = QFileDialog::getOpenFileName(this,
- tr("Load Window State"),
- "",
- Extensions);
-
+ tr("Load Window State"),
+ "",
+ Extensions);
+
ReadSavedStateFile(fileName.toStdString());
}
//------------------------------------------------------------------------------
//------------------------------------------------------------------------------
void vvMainWindow::ReadSavedStateFile(const std::string& stateFile)
-{
+{
vvReadState read_state;
read_state.Run(this, stateFile);
}
//------------------------------------------------------------------------------
void vvMainWindow::LinkAllImages()
-{
- linkPanel->linkAll();
+{
+ linkPanel->linkAll();
}
//------------------------------------------------------------------------------
void vvMainWindow::AddLink(QString image1,QString image2,bool fromPanel)
-{
+{
if (!fromPanel) {
// delegate to linkPanel if call came from elsewhere...
linkPanel->addLinkFromIds(image1, image2);
return;
}
-
+
unsigned int sm1 = 0;
unsigned int sm2 = 0;
//------------------------------------------------------------------------------
void vvMainWindow::RemoveLink(QString image1,QString image2)
-{
+{
for (unsigned int i = 0; i < mSlicerManagers.size(); i++) {
if (image1.toStdString() == mSlicerManagers[i]->GetId()) {
mSlicerManagers[i]->RemoveLink(image2.toStdString());
//------------------------------------------------------------------------------
void vvMainWindow::ChangeImageWithIndexOffset(vvSlicerManager *sm, int slicer, int offset)
-{
+{
if(mSlicerManagers.size()==1)
return;
DisplayChanged(item,slicer+1);
}
//------------------------------------------------------------------------------
-
void vvMainWindow::HorizontalSliderMoved(int value,int column, int slicer_index)
-{
+{
for (unsigned int i = 0; i < mSlicerManagers.size(); i++) {
if (DataTree->topLevelItem(i)->data(column,Qt::CheckStateRole).toInt() > 1) {
+ //i is the SlicerManager that is in charge of this slicer.
+ if (mSlicerManagers[i]->IsInvolvedInFusionSequence()) {
+ //if the slicerManager is involved in a fusionSequence as the secondary sequence, then update the slider position in the overlay panel and everything accordingly
+ if (mSlicerManagers[i]->IsSecondarySequenceOfFusionSequence()) {
+ overlayPanel->updateFusionSequenceSliderValueFromWindow(value, true);
+ }
+ else { //if this is the primary sequence that has been modified
+ if (mSlicerManagers[i]->GetFusionSequenceTemporalSyncFlag()) {
+ //WARNING: for some obscure reason, there are problems when accessing mSlicerManagers[mSlicerManagers[i]->GetFusionSequenceIndexOfLinkedManager()]->GetFusionSequenceFrameIndex();
+
+ int estimatedValue=0;
+ //estimate a corresponding time index for the secondary (US) sequence, and update it accordingly.
+ estimatedValue = mSlicerManagers[i]->GetFusionSequenceCorrespondances()[ value ];
+ //TODO: at the moment, there is a loop in TSlice modifications
+ //modifying sequence 1 causes seq 2 to update, which in turns update seq1...
+ //I disable control on seq1 at the moment.
+ //overlayPanel->updateFusionSequenceSliderValueFromWindow(estimatedValue, true);
+ }
+ }
+ }
+
for (int j = 0; j < 4; j++) {
mSlicerManagers[i]->SetTSliceInSlicer(value,j);
- //if (mSlicerManagers[i]->GetSlicer(j)->GetImageActor()->GetVisibility())
- //UpdateTSlice(j,value);
}
mSlicerManagers[i]->GetSlicer(slicer_index)->Render();
break;
//------------------------------------------------------------------------------
void vvMainWindow::NOHorizontalSliderMoved()
-{
+{
// if (mCurrentTime == NOHorizontalSlider->value()) return;
HorizontalSliderMoved(NOHorizontalSlider->value(),COLUMN_UL_VIEW,0);
-// mCurrentTime = NOHorizontalSlider->value();
+ // mCurrentTime = NOHorizontalSlider->value();
}
//------------------------------------------------------------------------------
//------------------------------------------------------------------------------
void vvMainWindow::NEHorizontalSliderMoved()
-{
+{
// if (mCurrentTime == NEHorizontalSlider->value()) return;
HorizontalSliderMoved(NEHorizontalSlider->value(),COLUMN_UR_VIEW,1);
-// mCurrentTime = NEHorizontalSlider->value();
+ // mCurrentTime = NEHorizontalSlider->value();
}
//------------------------------------------------------------------------------
//------------------------------------------------------------------------------
void vvMainWindow::SOHorizontalSliderMoved()
-{
+{
// if (mCurrentTime == SOHorizontalSlider->value()) return;
HorizontalSliderMoved(SOHorizontalSlider->value(),COLUMN_DL_VIEW,2);
// mCurrentTime = SOHorizontalSlider->value();
//------------------------------------------------------------------------------
void vvMainWindow::SEHorizontalSliderMoved()
-{
+{
// if (mCurrentTime == SEHorizontalSlider->value()) return;
HorizontalSliderMoved(SEHorizontalSlider->value(),COLUMN_DR_VIEW,3);
// mCurrentTime = SEHorizontalSlider->value();
//------------------------------------------------------------------------------
void vvMainWindow::NOVerticalSliderChanged()
-{
+{
static int value=-1;
if (value == NOVerticalSlider->value()) return;
else value = NOVerticalSlider->value();
//------------------------------------------------------------------------------
void vvMainWindow::NEVerticalSliderChanged()
-{
+{
static int value=-1;
if (value == NEVerticalSlider->value()) return;
else value = NEVerticalSlider->value();
//------------------------------------------------------------------------------
void vvMainWindow::SOVerticalSliderChanged()
-{
+{
static int value=-1;
if (value == SOVerticalSlider->value()) return;
else value = SOVerticalSlider->value();
//------------------------------------------------------------------------------
void vvMainWindow::SEVerticalSliderChanged()
-{
+{
static int value=-1;
if (value == SEVerticalSlider->value()) return;
else value = SEVerticalSlider->value();
//------------------------------------------------------------------------------
void vvMainWindow::UpdateSlice(int slicer, int slice)
-{
+{
// DD("vvMainWindow::UpdateSlice");
-// DD(slicer);
-// DD(slice);
+ // DD(slicer);
+ // DD(slice);
if (slicer == 0) {
// if (slice != NOVerticalSlider->value())
NOVerticalSlider->setValue(slice);
//------------------------------------------------------------------------------
-void vvMainWindow::UpdateTSlice(int slicer, int slice)
-{
+void vvMainWindow::UpdateTSlice(int slicer, int slice, int code)
+{
+ //FusionSequence: the slider value should be updated for slicers which show the same sequence as requested
+ bool doUpdate=false;
+ if (code==-1) doUpdate=true;
+ else {
+ for (unsigned int i = 0; i < mSlicerManagers.size(); i++) {
+ if (DataTree->topLevelItem(i)->data(slicer+1,Qt::CheckStateRole).toInt() > 1) {
+ //i is the active SlicerManager
+ if (mSlicerManagers[i]->GetFusionSequenceInvolvmentCode()==code) doUpdate=true;
+ break;
+ }
+ }
+ }
+ if (!doUpdate) return;
+
switch (slicer) {
case 0:
+ if (NOHorizontalSlider->value()==slice) return;
NOHorizontalSlider->setValue(slice);
break;
case 1:
+ if (NEHorizontalSlider->value()==slice) return;
NEHorizontalSlider->setValue(slice);
break;
case 2:
+ if (SOHorizontalSlider->value()==slice) return;
SOHorizontalSlider->setValue(slice);
break;
case 3:
+ if (SEHorizontalSlider->value()==slice) return;
SEHorizontalSlider->setValue(slice);
break;
}
//------------------------------------------------------------------------------
void vvMainWindow::UpdateSliceRange(int slicer, int min, int max, int tmin, int tmax)
-{
+{
//int position = int((min+max)/2);
int position = mSlicerManagers[mCurrentPickedImageIndex]->GetSlicer(slicer)->GetSlice();
if (slicer == 0) {
//------------------------------------------------------------------------------
void vvMainWindow::SaveNOScreenshot()
-{
+{
SaveScreenshot(NOViewWidget);
}
//------------------------------------------------------------------------------
//------------------------------------------------------------------------------
void vvMainWindow::SaveNEScreenshot()
-{
+{
SaveScreenshot(NEViewWidget);
}
//------------------------------------------------------------------------------
//------------------------------------------------------------------------------
void vvMainWindow::SaveSOScreenshot()
-{
+{
SaveScreenshot(SOViewWidget);
}
//------------------------------------------------------------------------------
//------------------------------------------------------------------------------
void vvMainWindow::SaveSEScreenshot()
-{
+{
SaveScreenshot(SEViewWidget);
}
//------------------------------------------------------------------------------
//------------------------------------------------------------------------------
void vvMainWindow::SaveScreenshotAllSlices()
-{
+{
QVTKWidget *widget = NOViewWidget;
int index = 0;// GetSlicerIndexFromItem(DataTree->selectedItems()[0]);
// Select filename base
QString filename = QFileDialog::getSaveFileName(this,
- tr("Save As (filename will be completed by slice number)"),
- itksys::SystemTools::GetFilenamePath(mSlicerManagers[index]->GetFileName()).c_str(),
- "Images( *.png);;Images( *.jpg)");
+ tr("Save As (filename will be completed by slice number)"),
+ itksys::SystemTools::GetFilenamePath(mSlicerManagers[index]->GetFileName()).c_str(),
+ "Images( *.png);;Images( *.jpg)");
// Loop on slices
for(int i=0; i<nbSlices; i++) {
// Change the slice
slicer->SetSlice(i); // -> change the slice of the current slicer
SM->UpdateSlice(0); // --> this one emit UpdateSlice
- QCoreApplication::flush(); // -> needed to force display of contours
+ QCoreApplication::flush(); // -> needed to force display of contours
- // Screenshot
+ // Screenshot
vtkSmartPointer<vtkWindowToImageFilter> windowToImageFilter = vtkSmartPointer<vtkWindowToImageFilter>::New();
windowToImageFilter->SetInput(renderWindow);
windowToImageFilter->SetMagnification(1);
windowToImageFilter->SetInputBufferTypeToRGBA(); //also record the alpha (transparency) channel
windowToImageFilter->Update();
-
+
vtkSmartPointer<vtkPNGWriter> writer = vtkSmartPointer<vtkPNGWriter>::New();
std::string fn = itksys::SystemTools::GetFilenameWithoutLastExtension(filename.toStdString());
std::string num = clitk::toString(i);
if (i<100) num = "0"+num;
if (i<1000) num = "0"+num;
- fn = itksys::SystemTools::GetFilenamePath(filename.toStdString()) + "/"+ fn
+ fn = itksys::SystemTools::GetFilenamePath(filename.toStdString()) + "/"+ fn
+ "_" + num + itksys::SystemTools::GetFilenameLastExtension(filename.toStdString());
writer->SetFileName(fn.c_str());
+#if VTK_MAJOR_VERSION <= 5
writer->SetInput(windowToImageFilter->GetOutput());
+#else
+ writer->SetInputConnection(windowToImageFilter->GetOutputPort());
+#endif
writer->Write();
}
}
//------------------------------------------------------------------------------
void vvMainWindow::SaveScreenshot(QVTKWidget *widget)
-{
+{
QString Extensions = "Images( *.png);;";
Extensions += "Images( *.jpg);;";
Extensions += "Images( *.bmp);;";
int smIndex=GetSlicerIndexFromItem(DataTree->selectedItems()[0]);
QString fileName = QFileDialog::getSaveFileName(this,
- tr("Save As"),
- itksys::SystemTools::GetFilenamePath(mSlicerManagers[smIndex]->GetFileName()).c_str(),
- Extensions);
+ tr("Save As"),
+ itksys::SystemTools::GetFilenamePath(mSlicerManagers[smIndex]->GetFileName()).c_str(),
+ Extensions);
if (!fileName.isEmpty()) {
vtkSmartPointer<vtkWindowToImageFilter> w2i = vtkSmartPointer<vtkWindowToImageFilter>::New();
// Snapshot image if not null
if(imgwriter!=NULL) {
+#if VTK_MAJOR_VERSION <= 5
imgwriter->SetInput(image);
+#else
+ imgwriter->SetInputConnection(w2i->GetOutputPort());
+#endif
imgwriter->SetFileName(fileName.toStdString().c_str());
imgwriter->Write();
return;
// FPS
bool ok;
- int fps = QInputDialog::getInteger(this, tr("Number of frames per second"),
- tr("FPS:"), 5, 0, 1000, 1, &ok);
+ int fps = QInputDialog::getInt(this, tr("Number of frames per second"),
+ tr("FPS:"), 5, 0, 1000, 1, &ok);
if(ok)
gif->SetRate(fps);
// Loops
- int loops = QInputDialog::getInteger(this, tr("Loops"),
- tr("Number of loops (0 means infinite):"), 0, 0, 1000000000, 1, &ok);
+ int loops = QInputDialog::getInt(this, tr("Loops"),
+ tr("Number of loops (0 means infinite):"), 0, 0, 1000000000, 1, &ok);
if(ok)
gif->SetLoops(loops);
vidwriter = mpg;
mpg->SetQuality(2);
bool ok;
- int fps = QInputDialog::getInteger(this, tr("Number of frames per second"),
- tr("FPS:"), 5, 0, 1024, 1, &ok);
+ int fps = QInputDialog::getInt(this, tr("Number of frames per second"),
+ tr("FPS:"), 5, 0, 1024, 1, &ok);
if(!ok)
fps = 5;
mpg->SetRate(fps);
vidwriter = mpg;
mpg->SetQuality(2);
bool ok;
- int fps = QInputDialog::getInteger(this, tr("Number of frames per second"),
- tr("FPS:"), 5, 0, 1024, 1, &ok);
+ int fps = QInputDialog::getInt(this, tr("Number of frames per second"),
+ tr("FPS:"), 5, 0, 1024, 1, &ok);
if(!ok)
fps = 5;
mpg->SetRate(fps);
// Take video if not null
if(vidwriter!=NULL){
+#if VTK_MAJOR_VERSION <= 5
vidwriter->SetInput(image);
+#else
+ vidwriter->SetInputConnection(w2i->GetOutputPort());
+#endif
vidwriter->SetFileName(fileName.toStdString().c_str());
vidwriter->Start();
int nSlice = mSlicerManagers[smIndex]->GetSlicer(0)->GetTMax();
vtkSmartPointer<vtkWindowToImageFilter> w2i = vtkSmartPointer<vtkWindowToImageFilter>::New();
w2i->SetInput(widget->GetRenderWindow());
w2i->Update();
+#if VTK_MAJOR_VERSION <= 5
vidwriter->SetInput(w2i->GetOutput());
+#else
+ vidwriter->SetInputConnection(w2i->GetOutputPort());
+#endif
vidwriter->Write();
}
vidwriter->End();
//------------------------------------------------------------------------------
void vvMainWindow::GoToCursor()
-{
+{
int index = GetSlicerIndexFromItem(DataTree->selectedItems()[0]);
for (int column = 1; column < 5; column++) {
if (DataTree->selectedItems()[0]->data(column,Qt::CheckStateRole).toInt() > 1) {
}
//------------------------------------------------------------------------------
+//------------------------------------------------------------------------------
+void vvMainWindow::GoToLandmark()
+{
+ int index = GetSlicerIndexFromItem(DataTree->selectedItems()[0]);
+ for (int column = 1; column < 5; column++) {
+ if (DataTree->selectedItems()[0]->data(column,Qt::CheckStateRole).toInt() > 1) {
+ double* cursorPos = landmarksPanel->GetSelectedPoint();
+ mSlicerManagers[index]->GetSlicer(column-1)->SetCurrentPosition(
+ cursorPos[0],cursorPos[1],cursorPos[2],cursorPos[3]);
+ mSlicerManagers[index]->UpdateViews(1,column-1);
+ mSlicerManagers[index]->UpdateLinked(column-1);
+ break;
+ }
+ }
+}
+//------------------------------------------------------------------------------
+
//------------------------------------------------------------------------------
void vvMainWindow::PlayPause()
-{
+{
if (playMode) {
playMode = 0;
playButton->setIcon(QIcon(QString::fromUtf8(":/common/icons/player_play.png")));
has_temporal=true;
break;
}
- if (has_temporal) {
- playMode = 1;
- playButton->setIcon(QIcon(QString::fromUtf8(":/common/icons/player_pause.png")));
- QTimer::singleShot(1000/mFrameRate, this, SLOT(PlayNext()));
- }
+ if (has_temporal) {
+ playMode = 1;
+ playButton->setIcon(QIcon(QString::fromUtf8(":/common/icons/player_pause.png")));
+ QTimer::singleShot(1000/mFrameRate, this, SLOT(PlayNext()));
+ }
}
}
//------------------------------------------------------------------------------
//------------------------------------------------------------------------------
void vvMainWindow::PlayNext()
-{
+{
if (playMode && !this->isHidden()) {
int image_number=DataTree->topLevelItemCount();
///Only play one slicer per SM, and only if the SM is being displayed
for (int i=0; i<image_number; i++)
for (int j=0; j<4; j++)
if (mSlicerManagers[i]->GetSlicer(0)->GetTMax() > 0 &&
- DataTree->topLevelItem(i)->data(j+1,Qt::CheckStateRole).toInt() > 0) {
- mSlicerManagers[i]->SetNextTSlice(j);
- break;
+ DataTree->topLevelItem(i)->data(j+1,Qt::CheckStateRole).toInt() > 0) {
+ mSlicerManagers[i]->SetNextTSlice(j);
+ break;
}
- QTimer::singleShot(1000/mFrameRate, this, SLOT(PlayNext()));
+ QTimer::singleShot(1000/mFrameRate, this, SLOT(PlayNext()));
}
}
//------------------------------------------------------------------------------
void vvMainWindow::ShowLastImage()
-{
+{
if (mSlicerManagers.size() > 1) {
QTreeWidgetItem * item=DataTree->topLevelItem(DataTree->topLevelItemCount()-1);
CurrentImageChanged(mSlicerManagers.back()->GetId()); //select new image
item->setData(1,Qt::CheckStateRole,2); //show the new image in the first panel
+ //mSlicerManagers[GetSlicerIndexFromItem(item)]->GetSlicer(0)->SetActorVisibility("image", 0, 1); //Set the Last Image visibles
DisplayChanged(item,1);
}
}
//------------------------------------------------------------------------------
void vvMainWindow::UpdateRenderWindows()
-{
+{
for (unsigned int i = 0; i < mSlicerManagers.size(); i++) {
- mSlicerManagers[i]->GetSlicer(0)->UpdateLandmarks();
- mSlicerManagers[i]->GetSlicer(1)->UpdateLandmarks();
- mSlicerManagers[i]->GetSlicer(2)->UpdateLandmarks();
- mSlicerManagers[i]->GetSlicer(3)->UpdateLandmarks();
+ for (unsigned int j = 0; j < 4; ++j) {
+ mSlicerManagers[i]->GetSlicer(j)->RemoveLandmarks();
+ mSlicerManagers[i]->GetSlicer(j)->DisplayLandmarks();
+ }
}
if (NOViewWidget->GetRenderWindow()) NOViewWidget->GetRenderWindow()->Render();
if (NEViewWidget->GetRenderWindow()) NEViewWidget->GetRenderWindow()->Render();
//------------------------------------------------------------------------------
void vvMainWindow::SegmentationOnCurrentImage()
-{
+{
int index = GetSlicerIndexFromItem(DataTree->selectedItems()[0]);
vvSegmentationDialog segmentation;
//------------------------------------------------------------------------------
void vvMainWindow::SurfaceViewerLaunch()
-{
+{
vvSurfaceViewerDialog surfaceViewer;
surfaceViewer.exec();
}
//------------------------------------------------------------------------------
int vvMainWindow::GetImageDuplicateFilenameNumber(std::string filename)
-{
+{
int number=0;
for(unsigned int l=0; l<mSlicerManagers.size(); l++) {
vvSlicerManager * v = mSlicerManagers[l];
if (v->GetBaseFileName() ==
- vtksys::SystemTools::GetFilenameName(vtksys::SystemTools::GetFilenameWithoutLastExtension(filename))) {
- number = std::max(number, v->GetBaseFileNameNumber()+1);
+ vtksys::SystemTools::GetFilenameName(vtksys::SystemTools::GetFilenameWithoutLastExtension(filename))) {
+ number = std::max(number, v->GetBaseFileNameNumber()+1);
}
}
return number;
//------------------------------------------------------------------------------
vvSlicerManager* vvMainWindow::AddImage(vvImage::Pointer image,std::string filename)
-{
+{
// Change filename if another image exist with the same name
int number = GetImageDuplicateFilenameNumber(filename);
cButton->setColumn(COLUMN_CLOSE_IMAGE);
cButton->setIcon(QIcon(QString::fromUtf8(":/common/icons/exit.png")));
connect(cButton,SIGNAL(clickedInto(QTreeWidgetItem*, int)),
- this,SLOT(CloseImage(QTreeWidgetItem*, int)));
+ this,SLOT(CloseImage(QTreeWidgetItem*, int)));
QTreePushButton* rButton = new QTreePushButton;
rButton->setItem(item);
rButton->setIcon(QIcon(QString::fromUtf8(":/common/icons/rotateright.png")));
rButton->setEnabled(0);
connect(rButton,SIGNAL(clickedInto(QTreeWidgetItem*, int)),
- this,SLOT(ReloadImage(QTreeWidgetItem*, int)));
+ this,SLOT(ReloadImage(QTreeWidgetItem*, int)));
DataTree->addTopLevelItem(item);
DataTree->setItemWidget(item, COLUMN_CLOSE_IMAGE, cButton);
mSlicerManagers.back()->SetId(id.toStdString());
linkPanel->addImage(slicer_manager->GetFileName().c_str()// filename
- , id.toStdString());
+ , id.toStdString());
connect(mSlicerManagers.back(), SIGNAL(currentImageChanged(std::string)),
- this, SLOT(CurrentImageChanged(std::string)));
+ this, SLOT(CurrentImageChanged(std::string)));
connect(mSlicerManagers.back(), SIGNAL(currentPickedImageChanged(std::string)),
- this, SLOT(CurrentPickedImageChanged(std::string)));
+ this, SLOT(CurrentPickedImageChanged(std::string)));
connect(mSlicerManagers.back(), SIGNAL(UpdatePosition(int, double, double, double, double, double, double, double)),
- this, SLOT(MousePositionChanged(int,double, double, double, double, double, double, double)));
+ this, SLOT(MousePositionChanged(int,double, double, double, double, double, double, double)));
connect(mSlicerManagers.back(), SIGNAL(UpdateVector(int, double, double, double, double)),
- this, SLOT(VectorChanged(int,double,double,double, double)));
+ this, SLOT(VectorChanged(int,double,double,double, double)));
connect(mSlicerManagers.back(), SIGNAL(UpdateOverlay(int, double, double)),
- this, SLOT(OverlayChanged(int,double,double)));
+ this, SLOT(OverlayChanged(int,double,double)));
connect(mSlicerManagers.back(), SIGNAL(UpdateFusion(int, double)),
- this, SLOT(FusionChanged(int,double)));
+ this, SLOT(FusionChanged(int,double)));
+ //connect(mSlicerManagers.back(), SIGNAL(UpdateFusionSequence(int, bool, unsigned int)),
+ // this, SLOT(FusionSequenceChanged(int, bool, unsigned int)));
connect(mSlicerManagers.back(), SIGNAL(WindowLevelChanged()),
- this,SLOT(WindowLevelChanged()));
+ this,SLOT(WindowLevelChanged()));
connect(mSlicerManagers.back(), SIGNAL(UpdateSlice(int,int)),
- this,SLOT(UpdateSlice(int,int)));
- connect(mSlicerManagers.back(), SIGNAL(UpdateTSlice(int, int)),
- this,SLOT(UpdateTSlice(int, int)));
- connect(mSlicerManagers.back(), SIGNAL(UpdateTSlice(int, int)),
- this,SLOT(ImageInfoChanged()));
+ this,SLOT(UpdateSlice(int,int)));
+ connect(mSlicerManagers.back(), SIGNAL(UpdateTSlice(int, int, int)),
+ this,SLOT(UpdateTSlice(int, int, int)));
+ connect(mSlicerManagers.back(), SIGNAL(UpdateTSlice(int, int, int)),
+ this,SLOT(ImageInfoChanged()));
connect(mSlicerManagers.back(), SIGNAL(UpdateSliceRange(int,int,int,int,int)),
- this,SLOT(UpdateSliceRange(int,int,int,int,int)));
+ this,SLOT(UpdateSliceRange(int,int,int,int,int)));
connect(mSlicerManagers.back(), SIGNAL(UpdateLinkManager(std::string,int,double,double,double,int)),
- this,SLOT(UpdateLinkManager(std::string,int,double,double,double,int)));
+ this,SLOT(UpdateLinkManager(std::string,int,double,double,double,int)));
connect(mSlicerManagers.back(), SIGNAL(UpdateLinkedNavigation(std::string,vvSlicerManager*,vvSlicer*)),
- this,SLOT(UpdateLinkedNavigation(std::string,vvSlicerManager*,vvSlicer*)));
+ this,SLOT(UpdateLinkedNavigation(std::string,vvSlicerManager*,vvSlicer*)));
connect(mSlicerManagers.back(), SIGNAL(ChangeImageWithIndexOffset(vvSlicerManager*,int,int)),
- this,SLOT(ChangeImageWithIndexOffset(vvSlicerManager*,int,int)));
+ this,SLOT(ChangeImageWithIndexOffset(vvSlicerManager*,int,int)));
connect(mSlicerManagers.back(), SIGNAL(LandmarkAdded()),landmarksPanel,SLOT(AddPoint()));
+
+
+
+ InitSlicers();
UpdateTree();
qApp->processEvents();
- InitSlicers();
- ShowLastImage();
InitDisplay();
+ ShowLastImage();
qApp->processEvents();
-
// End
ImageInfoChanged();
return slicer_manager;
//------------------------------------------------------------------------------
void vvMainWindow::UpdateCurrentSlicer()
-{
+{
int index = -1;
if (DataTree->selectedItems().size() > 0) {
index = GetSlicerIndexFromItem(DataTree->selectedItems()[0]);
mSlicerManagerCurrentIndex = index;
}
//------------------------------------------------------------------------------
-
git://git.creatis.insa-lyon.fr / clitk.git / blobdiff