#include "vvMeshReader.h"
#include "vvConstants.h"
-#ifdef CLITK_VV_USE_BDCM
-#include <bdcmDicomFilesSelectorDialog.h>
-#endif
-
// ITK include
#include "itkImage.h"
#include "itkImageFileReader.h"
#define COLUMN_RELOAD_IMAGE 6
#define COLUMN_IMAGE_NAME 7
-#define EXTENSIONS "Images ( *.bmp *.png *.jpeg *.jpg *.tif *.mhd *.hdr *.vox *.his *.xdr)"
+#define EXTENSIONS "Images ( *.bmp *.png *.jpeg *.jpg *.tif *.mhd *.hdr *.vox *.his *.xdr *.SCAN )"
/*Data Tree values
0,Qt::UserRole full filename
mInputPathName = "";
mMenuTools = menuTools;
+ // mMenuSegmentation = menuSegmentation;
mContextMenu = &contextMenu;
mMenuExperimentalTools = menuExperimental;
mMainWidget = this;
mCurrentTime = -1;
+ mCurrentSelectedImageId = "";
//Init the contextMenu
this->setContextMenuPolicy(Qt::CustomContextMenu);
connect(actionAdd_Overlay_to_current_Image,SIGNAL(triggered()), this,SLOT(SelectOverlayImage()));
contextMenu.addAction(actionAdd_fusion_image);
- connect(actionAdd_fusion_image,SIGNAL(triggered()),this,SLOT(AddFusionImage()));
+ connect(actionAdd_fusion_image,SIGNAL(triggered()),this,SLOT(SelectFusionImage()));
contextActions.push_back(actionAdd_fusion_image);
// TRIAL DS
void vvMainWindow::OpenDCStructContour()
{
if (mSlicerManagers.size() > 0) {
- QString Extensions = "Dicom Files ( *.dcm; RS*)";
+ QString Extensions = "Dicom Files ( *.dcm RS*)";
Extensions += ";;All Files (*)";
QString file = QFileDialog::getOpenFileName(this,tr("Merge Images"),mInputPathName,Extensions);
if (file.isNull())
{
std::vector<std::string> files;
-#ifdef CLITK_VV_USE_BDCM
- bool r = bdcm::OpenDicomFilesSelectorDialog(files,
- "DicomFilesSelectorDialog test",
- 0,0,800,800,1);
-
- if (r) {
- std::cout << "$$$$ main : user clicked 'OK' $$$$"<<std::endl;
- std::cout << "$$$$ selected files : "<<std::endl;
- std::vector<std::string>::iterator i;
- for (i=files.begin(); i!=files.end(); ++i) {
- std::cout << *i << std::endl;
- }
- std::cout << "$$$$ "<<std::endl;
-
- LoadImages(files,DICOM);
- } else {
- std::cout << "$$$$ main : user clicked 'CANCEL' $$$$"<<std::endl;
- }
-#else
std::cout << "dicomSeriesSelector " << std::endl;
if (dicomSeriesSelector->exec() == QDialog::Accepted) {
files = *(dicomSeriesSelector->GetFilenames());
LoadImages(files,DICOM);
}
-#endif
-
}
//------------------------------------------------------------------------------
//open images as 1 or multiples
for (int i = 0; i < fileSize; i++) {
- progress.Update("Opening " + files[i]);
+ progress.SetText("Opening " + files[i]);
progress.SetProgress(i,fileSize);
qApp->processEvents();
bool SetImageSucceed=false;
// Change filename if an image with the same already exist
- // DD(files[i]);
- int number=0;
- for(unsigned int l=0; l<mSlicerManagers.size(); l++) {
- vvSlicerManager * v = mSlicerManagers[l];
- // DD(v->GetBaseFileName());
- // DD(v->GetFileName());
- if (v->GetBaseFileName() ==
- vtksys::SystemTools::GetFilenameName(vtksys::SystemTools::GetFilenameWithoutLastExtension(files[i]))) {
- number = std::max(number, v->GetBaseFileNameNumber()+1);
- }
- }
-
+ int number = GetImageDuplicateFilenameNumber(files[i]);
if (filetype == IMAGE || filetype == IMAGEWITHTIME)
SetImageSucceed = imageManager->SetImage(files[i],filetype, number);
this,SLOT(UpdateSliceRange(int,int,int,int,int)));
connect(mSlicerManagers.back(), SIGNAL(UpdateLinkManager(std::string,int,double,double,double,int)),
this,SLOT(UpdateLinkManager(std::string,int,double,double,double,int)));
+ connect(mSlicerManagers.back(), SIGNAL(UpdateLinkedNavigation(std::string,vvSlicerManager*)),
+ this,SLOT(UpdateLinkedNavigation(std::string,vvSlicerManager*)));
connect(mSlicerManagers.back(), SIGNAL(ChangeImageWithIndexOffset(vvSlicerManager*,int,int)),
this,SLOT(ChangeImageWithIndexOffset(vvSlicerManager*,int,int)));
connect(mSlicerManagers.back(),SIGNAL(LandmarkAdded()),landmarksPanel,SLOT(AddPoint()));
UpdateTree();
InitDisplay();
ShowLastImage();
- }
- QApplication::restoreOverrideCursor();
- // Try to guess default WindowLevel
- double range[2];
- mSlicerManagers.back()->GetImage()->GetFirstVTKImageData()->GetScalarRange(range);
- // DD(range[0]);
- // DD(range[1]);
- if ((range[0] == 0) && (range[1] == 1)) {
- presetComboBox->setCurrentIndex(5);// binary
- } else {
- // TODO
+ // Try to guess default WindowLevel
+ double range[2];
+ mSlicerManagers.back()->GetImage()->GetFirstVTKImageData()->GetScalarRange(range);
+ // DD(range[0]);
+ // DD(range[1]);
+ if ((range[0] == 0) && (range[1] == 1)) {
+ presetComboBox->setCurrentIndex(5);// binary
+ } else {
+ // TODO
+ }
}
+ QApplication::restoreOverrideCursor();
}
//------------------------------------------------------------------------------
//------------------------------------------------------------------------------
void vvMainWindow::CurrentImageChanged(std::string id)
{
- // DD("CurrentImageChanged");
+ // DD("CurrentImageChanged");
+// DD(id);
+// DD(mCurrentSelectedImageId);
+ if (id == mCurrentSelectedImageId) return; // Do nothing
int selected = 0;
for (int i = 0; i < DataTree->topLevelItemCount(); i++) {
if (DataTree->topLevelItem(i)->data(COLUMN_IMAGE_NAME,Qt::UserRole).toString().toStdString() == id) {
}
DataTree->topLevelItem(selected)->setSelected(1);
- // DD(mSlicerManagers[selected]->GetFileName());
+ // DD(mSlicerManagers[selected]->GetFileName());
+ mCurrentSelectedImageId = id;
emit SelectedImageHasChanged(mSlicerManagers[selected]);
}
//------------------------------------------------------------------------------
inputSpacing.resize(dimension);
inputSize.resize(dimension);
sizeMM.resize(dimension);
- pixelType = mSlicerManagers[index]->GetImage()->GetScalarTypeAsString().c_str();
+ pixelType = mSlicerManagers[index]->GetImage()->GetScalarTypeAsITKString().c_str();
for (int i = 0; i < dimension; i++) {
origin[i] = imageSelected->GetOrigin()[i];
inputSpacing[i] = imageSelected->GetSpacing()[i];
inputSpacing.resize(dimension);
inputSize.resize(dimension);
sizeMM.resize(dimension);
- pixelType = mSlicerManagers[index]->GetVF()->GetScalarTypeAsString().c_str();
+ pixelType = mSlicerManagers[index]->GetVF()->GetScalarTypeAsITKString().c_str();
for (int i = 0; i < dimension; i++) {
origin[i] = imageSelected->GetOrigin()[i];
inputSpacing[i] = imageSelected->GetSpacing()[i];
inputSpacing.resize(dimension);
inputSize.resize(dimension);
sizeMM.resize(dimension);
- pixelType = mSlicerManagers[index]->GetImage()->GetScalarTypeAsString().c_str();
+ pixelType = mSlicerManagers[index]->GetImage()->GetScalarTypeAsITKString().c_str();
for (int i = 0; i < dimension; i++) {
origin[i] = imageSelected->GetOrigin()[i];
inputSpacing[i] = imageSelected->GetSpacing()[i];
inputSpacing.resize(dimension);
inputSize.resize(dimension);
sizeMM.resize(dimension);
- pixelType = mSlicerManagers[index]->GetImage()->GetScalarTypeAsString().c_str();
+ pixelType = mSlicerManagers[index]->GetImage()->GetScalarTypeAsITKString().c_str();
for (int i = 0; i < dimension; i++) {
origin[i] = imageSelected->GetOrigin()[i];
inputSpacing[i] = imageSelected->GetSpacing()[i];
this,SLOT(UpdateSliceRange(int,int,int,int,int)));
connect(mSlicerManagers.back(),SIGNAL(UpdateLinkManager(std::string,int,double,double,double,int)),
this,SLOT(UpdateLinkManager(std::string,int,double,double,double,int)));
+ connect(mSlicerManagers.back(), SIGNAL(UpdateLinkedNavigation(std::string,vvSlicerManager*)),
+ this,SLOT(UpdateLinkedNavigation(std::string,vvSlicerManager*)));
connect(mSlicerManagers.back(),SIGNAL(LandmarkAdded()),landmarksPanel,SLOT(AddPoint()));
UpdateTree();
qApp->processEvents();
}
//------------------------------------------------------------------------------
+//------------------------------------------------------------------------------
+void vvMainWindow::UpdateLinkedNavigation(std::string id, vvSlicerManager * sm)
+{
+ for (unsigned int i = 0; i < mSlicerManagers.size(); i++) {
+ if (id == mSlicerManagers[i]->GetId()) {
+ mSlicerManagers[i]->UpdateLinkedNavigation(sm->GetSlicer(0));
+ }
+ }
+}
+//------------------------------------------------------------------------------
+
//------------------------------------------------------------------------------
void vvMainWindow::ShowContextMenu(QPoint point)
{
QMessageBox::information(this,tr("Problem reading image !"),error);
}
}
+//------------------------------------------------------------------------------
+
+
+//------------------------------------------------------------------------------
+void vvMainWindow::AddROI(int index, QString file)
+{
+ DD("AddImageAndROI");
+ /*
+ // Get slice manager
+
+ // Load image
+
+ vvImageReader * mReader = new vvImageReader;
+ mReader->SetInputFilename(filename.toStdString());
+ mReader->Update(IMAGE);
+ if (mReader->GetLastError().size() != 0) {
+ std::cerr << "Error while reading " << filename.toStdString() << std::endl;
+ QString error = "Cannot open file \n";
+ error += mReader->GetLastError().c_str();
+ QMessageBox::information(this,tr("Reading problem"),error);
+ delete mReader;
+ return;
+ }
+ vvImage::Pointer roi = mReader->GetOutput();
+
+ // Create roi in new tool
+ vvToolStructureSetManager::AddImage(mCurrentSlicerManager, roi);
+*/
+}
+//------------------------------------------------------------------------------
-void vvMainWindow::AddFusionImage()
+//------------------------------------------------------------------------------
+void vvMainWindow::SelectFusionImage()
{
int index = GetSlicerIndexFromItem(DataTree->selectedItems()[0]);
QString Extensions = EXTENSIONS;
Extensions += ";;All Files (*)";
QString file = QFileDialog::getOpenFileName(this,tr("Load Fusion image"),mInputPathName,Extensions);
- if (!file.isEmpty()) {
- mInputPathName = itksys::SystemTools::GetFilenamePath(file.toStdString()).c_str();
- itk::ImageIOBase::Pointer reader = itk::ImageIOFactory::CreateImageIO(
- file.toStdString().c_str(), itk::ImageIOFactory::ReadMode);
- reader->SetFileName(file.toStdString().c_str());
- reader->ReadImageInformation();
- std::string component = reader->GetComponentTypeAsString(reader->GetComponentType());
- if (reader) {
- QApplication::setOverrideCursor(QCursor(Qt::WaitCursor));
- vvProgressDialog progress("Opening fusion");
- qApp->processEvents();
+ if (!file.isEmpty())
+ AddFusionImage(index,file);
+}
+//------------------------------------------------------------------------------
- std::string filename = itksys::SystemTools::GetFilenameWithoutExtension(file.toStdString()).c_str();
- if (mSlicerManagers[index]->SetFusion(file.toStdString(),
- reader->GetNumberOfDimensions(), component)) {
- //create an item in the tree with good settings
- QTreeWidgetItem *item = new QTreeWidgetItem();
- item->setData(0,Qt::UserRole,file.toStdString().c_str());
- item->setData(1,Qt::UserRole,tr("fusion"));
- item->setData(COLUMN_IMAGE_NAME,Qt::DisplayRole,filename.c_str());
- qApp->processEvents();
+//------------------------------------------------------------------------------
+void vvMainWindow::AddFusionImage(int index, QString file)
+{
+ mInputPathName = itksys::SystemTools::GetFilenamePath(file.toStdString()).c_str();
+ itk::ImageIOBase::Pointer reader = itk::ImageIOFactory::CreateImageIO(
+ file.toStdString().c_str(), itk::ImageIOFactory::ReadMode);
+ reader->SetFileName(file.toStdString().c_str());
+ reader->ReadImageInformation();
+ std::string component = reader->GetComponentTypeAsString(reader->GetComponentType());
+ if (reader) {
+ QApplication::setOverrideCursor(QCursor(Qt::WaitCursor));
+ vvProgressDialog progress("Opening fusion");
+ qApp->processEvents();
- for (int j = 1; j <= 4; j++) {
- item->setData(j,Qt::CheckStateRole,DataTree->topLevelItem(index)->data(j,Qt::CheckStateRole));
- mSlicerManagers[index]->GetSlicer(j-1)->SetActorVisibility("fusion",0,
- DataTree->topLevelItem(index)->data(j,Qt::CheckStateRole).toInt());
- }
+ std::string filename = itksys::SystemTools::GetFilenameWithoutExtension(file.toStdString()).c_str();
+ if (mSlicerManagers[index]->SetFusion(file.toStdString(),
+ reader->GetNumberOfDimensions(), component)) {
+ //create an item in the tree with good settings
+ QTreeWidgetItem *item = new QTreeWidgetItem();
+ item->setData(0,Qt::UserRole,file.toStdString().c_str());
+ item->setData(1,Qt::UserRole,tr("fusion"));
+ item->setData(COLUMN_IMAGE_NAME,Qt::DisplayRole,filename.c_str());
+ qApp->processEvents();
- //Create the buttons for reload and close
- qApp->processEvents();
- QTreePushButton* cButton = new QTreePushButton;
- cButton->setItem(item);
- cButton->setColumn(COLUMN_CLOSE_IMAGE);
- cButton->setToolTip(tr("close image"));
- cButton->setIcon(QIcon(QString::fromUtf8(":/common/icons/exit.png")));
- connect(cButton,SIGNAL(clickedInto(QTreeWidgetItem*, int)),
- this,SLOT(CloseImage(QTreeWidgetItem*, int)));
+ for (int j = 1; j <= 4; j++) {
+ item->setData(j,Qt::CheckStateRole,DataTree->topLevelItem(index)->data(j,Qt::CheckStateRole));
+ mSlicerManagers[index]->GetSlicer(j-1)->SetActorVisibility("fusion",0,
+ DataTree->topLevelItem(index)->data(j,Qt::CheckStateRole).toInt());
+ }
- QTreePushButton* rButton = new QTreePushButton;
- rButton->setItem(item);
- rButton->setColumn(COLUMN_RELOAD_IMAGE);
- rButton->setToolTip(tr("reload image"));
- rButton->setIcon(QIcon(QString::fromUtf8(":/common/icons/rotateright.png")));
- connect(rButton,SIGNAL(clickedInto(QTreeWidgetItem*, int)),
- this,SLOT(ReloadImage(QTreeWidgetItem*, int)));
+ //Create the buttons for reload and close
+ qApp->processEvents();
+ QTreePushButton* cButton = new QTreePushButton;
+ cButton->setItem(item);
+ cButton->setColumn(COLUMN_CLOSE_IMAGE);
+ cButton->setToolTip(tr("close image"));
+ cButton->setIcon(QIcon(QString::fromUtf8(":/common/icons/exit.png")));
+ connect(cButton,SIGNAL(clickedInto(QTreeWidgetItem*, int)),
+ this,SLOT(CloseImage(QTreeWidgetItem*, int)));
- DataTree->topLevelItem(index)->setExpanded(1);
- DataTree->topLevelItem(index)->addChild(item);
- DataTree->setItemWidget(item, COLUMN_CLOSE_IMAGE, cButton);
- DataTree->setItemWidget(item, COLUMN_RELOAD_IMAGE, rButton);
+ QTreePushButton* rButton = new QTreePushButton;
+ rButton->setItem(item);
+ rButton->setColumn(COLUMN_RELOAD_IMAGE);
+ rButton->setToolTip(tr("reload image"));
+ rButton->setIcon(QIcon(QString::fromUtf8(":/common/icons/rotateright.png")));
+ connect(rButton,SIGNAL(clickedInto(QTreeWidgetItem*, int)),
+ this,SLOT(ReloadImage(QTreeWidgetItem*, int)));
- //set the id of the image
- QString id = DataTree->topLevelItem(index)->data(COLUMN_IMAGE_NAME,Qt::UserRole).toString();
- item->setData(COLUMN_IMAGE_NAME,Qt::UserRole,id.toStdString().c_str());
- UpdateTree();
- qApp->processEvents();
- ImageInfoChanged();
- QApplication::restoreOverrideCursor();
- } else {
- QApplication::restoreOverrideCursor();
- QString error = "Cannot import the new image.\n";
- error += mSlicerManagers[index]->GetLastError().c_str();
- QMessageBox::information(this,tr("Problem reading image !"),error);
- }
+ DataTree->topLevelItem(index)->setExpanded(1);
+ DataTree->topLevelItem(index)->addChild(item);
+ DataTree->setItemWidget(item, COLUMN_CLOSE_IMAGE, cButton);
+ DataTree->setItemWidget(item, COLUMN_RELOAD_IMAGE, rButton);
+
+ //set the id of the image
+ QString id = DataTree->topLevelItem(index)->data(COLUMN_IMAGE_NAME,Qt::UserRole).toString();
+ item->setData(COLUMN_IMAGE_NAME,Qt::UserRole,id.toStdString().c_str());
+ UpdateTree();
+ qApp->processEvents();
+ ImageInfoChanged();
+ QApplication::restoreOverrideCursor();
} else {
+ QApplication::restoreOverrideCursor();
QString error = "Cannot import the new image.\n";
+ error += mSlicerManagers[index]->GetLastError().c_str();
QMessageBox::information(this,tr("Problem reading image !"),error);
}
+ } else {
+ QString error = "Cannot import the new image.\n";
+ QMessageBox::information(this,tr("Problem reading image !"),error);
}
}
//------------------------------------------------------------------------------
if (value == NOVerticalSlider->value()) return;
else value = NOVerticalSlider->value();
// int value = NOVerticalSlider->value();
- for (unsigned int i = 0; i < mSlicerManagers.size(); i++)
- {
- if (DataTree->topLevelItem(i)->data(COLUMN_UL_VIEW,Qt::CheckStateRole).toInt() > 1)
- {
- if (mSlicerManagers[i]->GetSlicer(0)->GetSlice() != value) {
- mSlicerManagers[i]->GetSlicer(0)->SetSlice(value);
- mSlicerManagers[i]->VerticalSliderHasChanged(0, value);
-
- // If nor Update/Render -> slider not work
- // only render = ok navigation, but for contour Update needed but slower ?
-
- mSlicerManagers[i]->UpdateSlice(0); // <-- DS add this. Not too much update ? YES. but needed for ImageContour ...
- //mSlicerManagers[i]->GetSlicer(0)->Render(); // <-- DS add this, needed for contour, seems ok ? not too slow ?
- }
- break;
- }
+ for (unsigned int i = 0; i < mSlicerManagers.size(); i++) {
+ if (DataTree->topLevelItem(i)->data(COLUMN_UL_VIEW,Qt::CheckStateRole).toInt() > 1) {
+ if (mSlicerManagers[i]->GetSlicer(0)->GetSlice() != value) {
+ mSlicerManagers[i]->GetSlicer(0)->SetSlice(value);
+ mSlicerManagers[i]->VerticalSliderHasChanged(0, value);
+
+ // If nor Update/Render -> slider not work
+ // only render = ok navigation, but for contour Update needed but slower ?
+
+ mSlicerManagers[i]->UpdateSlice(0); // <-- DS add this. Not too much update ? YES. but needed for ImageContour ...
+ //mSlicerManagers[i]->GetSlicer(0)->Render(); // <-- DS add this, needed for contour, seems ok ? not too slow ?
+ }
+ break;
}
+ }
}
//------------------------------------------------------------------------------
//------------------------------------------------------------------------------
void vvMainWindow::SOVerticalSliderChanged()
{
- // DD("SOVerticalSliderChanged");
static int value=-1;
// DD(value);
// DD(SOVerticalSlider->value());
vvSurfaceViewerDialog surfaceViewer;
surfaceViewer.exec();
}
+//------------------------------------------------------------------------------
+
+
+//------------------------------------------------------------------------------
+int vvMainWindow::GetImageDuplicateFilenameNumber(std::string filename)
+{
+ int number=0;
+ for(unsigned int l=0; l<mSlicerManagers.size(); l++) {
+ vvSlicerManager * v = mSlicerManagers[l];
+ if (v->GetBaseFileName() ==
+ vtksys::SystemTools::GetFilenameName(vtksys::SystemTools::GetFilenameWithoutLastExtension(filename))) {
+ number = std::max(number, v->GetBaseFileNameNumber()+1);
+ }
+ }
+ return number;
+}
+//------------------------------------------------------------------------------
+
//------------------------------------------------------------------------------
-void vvMainWindow::AddImage(vvImage::Pointer image,std::string filename)
+vvSlicerManager* vvMainWindow::AddImage(vvImage::Pointer image,std::string filename)
{
+ // Change filename if another image exist with the same name
+ int number = GetImageDuplicateFilenameNumber(filename);
+
+ // Create new SliceManager
vvSlicerManager* slicer_manager = new vvSlicerManager(4);
- slicer_manager->SetImage(image);
- slicer_manager->SetFilename(filename);
+ slicer_manager->SetImage(image);//, IMAGE, number);
+ // filename = filename+"_"+clitk::toString(number);
+ slicer_manager->SetFilename(filename, number);
mSlicerManagers.push_back(slicer_manager);
//create an item in the tree with good settings
this,SLOT(UpdateSliceRange(int,int,int,int,int)));
connect(mSlicerManagers.back(), SIGNAL(UpdateLinkManager(std::string,int,double,double,double,int)),
this,SLOT(UpdateLinkManager(std::string,int,double,double,double,int)));
+ connect(mSlicerManagers.back(), SIGNAL(UpdateLinkedNavigation(std::string,vvSlicerManager*)),
+ this,SLOT(UpdateLinkedNavigation(std::string,vvSlicerManager*)));
connect(mSlicerManagers.back(), SIGNAL(ChangeImageWithIndexOffset(vvSlicerManager*,int,int)),
this,SLOT(ChangeImageWithIndexOffset(vvSlicerManager*,int,int)));
connect(mSlicerManagers.back(), SIGNAL(LandmarkAdded()),landmarksPanel,SLOT(AddPoint()));
ShowLastImage();
InitDisplay();
qApp->processEvents();
+
+ // End
+ return slicer_manager;
}
//------------------------------------------------------------------------------
git://git.creatis.insa-lyon.fr / clitk.git / blobdiff