#include <algorithm>
#include <QMessageBox>
+#include <QMimeData>
#include <QInputDialog>
#include <QTimer>
#include "QTreePushButton.h"
#include "vvMeshReader.h"
#include "vvSaveState.h"
#include "vvReadState.h"
+#if CLITK_USE_PACS_CONNECTION
+#include "vvQPacsConnection.h"
+#endif
#include "clitkConfiguration.h"
#include "clitkMatrix.h"
#ifdef Q_OS_OSX
#include <vtkPNGWriter.h>
#include <vtkJPEGWriter.h>
#include <vtkGenericMovieWriter.h>
-#ifdef CLITK_EXPERIMENTAL
-# include <vvAnimatedGIFWriter.h>
-#endif
+#include <vvAnimatedGIFWriter.h>
#ifdef VTK_USE_VIDEO_FOR_WINDOWS
# include <vtkAVIWriter.h>
#endif
{
setupUi(this); // this sets up the GUI
+ setAcceptDrops(true); // enable to drop into the window
+
+ setDicomClient();
+
//Qt::WindowFlags flags = windowFlags();
//setWindowFlags(flags | Qt::WindowStaysOnTopHint);
documentation = new vvDocumentation();
help_dialog = new vvHelpDialog();
dicomSeriesSelector = new vvDicomSeriesSelector();
+#if CLITK_USE_PACS_CONNECTION
+ PacsConnection = new vvQPacsConnection();
+#endif
inverseButton->setEnabled(0);
actionAdd_overlay_image_to_current_image->setEnabled(0);
connect(actionWarp_image_with_vector_field,SIGNAL(triggered()),this,SLOT(WarpImage()));
connect(actionLoad_images,SIGNAL(triggered()),this,SLOT(OpenImages()));
connect(actionOpen_Dicom,SIGNAL(triggered()),this,SLOT(OpenDicom()));
+#if CLITK_USE_PACS_CONNECTION
+ connect(actionConnect_Pacs,SIGNAL(triggered()),this,SLOT(ConnectPacs()));
+#endif
// connect(actionOpen_Dicom_Struct,SIGNAL(triggered()),this,SLOT(OpenDCStructContour()));
connect(actionOpen_VTK_contour,SIGNAL(triggered()),this,SLOT(OpenVTKContour()));
connect(actionOpen_Multiple_Images_As_One,SIGNAL(triggered()),this,SLOT(MergeImages()));
vvToolManager::GetInstance()->InsertToolsInMenu(this);
vvToolManager::GetInstance()->EnableToolsInMenu(this, false);
+//#ifndef CLITK_EXPERIMENTAL
+//#define CLITK_EXPERIMENTAL 0
+//#endif
+#ifdef CLITK_EXPERIMENTAL
if (!CLITK_EXPERIMENTAL)
menuExperimental->menuAction()->setVisible(false);
+#endif
+#if !CLITK_USE_PACS_CONNECTION
+ actionConnect_Pacs->setVisible(false);
+#endif
QTimer * timerMemory = new QTimer(this);
//timerMemory->setInterval(5);
{
// clitk::PrintMemory(true);
if (clitk::GetMemoryUsageInMb() == 0) infoPanel->setMemoryInMb("NA");
- else infoPanel->setMemoryInMb(QString::number(clitk::GetMemoryUsageInMb())+" MiB");
+ else infoPanel->setMemoryInMb(QString::number(clitk::GetMemoryUsageInMb())+" MB");
}
//------------------------------------------------------------------------------
files = *(dicomSeriesSelector->GetFilenames());
LoadImages(files, vvImageReader::DICOM);
}
-}
+}
+#if CLITK_USE_PACS_CONNECTION
+void vvMainWindow::ConnectPacs()
+{
+ std::vector<std::string> files;
+
+ //std::cout << "dicomSeriesSelector " << std::endl;
+if (PacsConnection->exec() == QDialog::Accepted) {
+ for (int i = 0; i < PacsConnection->getSeriesCount(); i++)
+ {
+ files = PacsConnection->getFileNames(i);
+ LoadImages(files, vvImageReader::DICOM);
+ }
+ PacsConnection->clearMove();
+ }
+ }
+
+#endif
//------------------------------------------------------------------------------
//------------------------------------------------------------------------------
LoadImages(images, vvImageReader::IMAGE);
}
//------------------------------------------------------------------------------
+void vvMainWindow::dragEnterEvent(QDragEnterEvent *event)
+{
+ if (event->mimeData()->hasUrls()) {
+ event->acceptProposedAction();
+ }
+}
+//------------------------------------------------------------------------------
+void vvMainWindow::dropEvent(QDropEvent *event)
+{
+ const QMimeData * mimeData = event->mimeData();
+ if (!mimeData->hasUrls())
+ return;
+ std::vector<std::string> images;
+ for (auto const & url : mimeData->urls()) {
+ images.push_back(url.toLocalFile().toStdString());
+ }
+ LoadImages(images, vvImageReader::IMAGE);
+}
+//------------------------------------------------------------------------------
//------------------------------------------------------------------------------
// Change filename if an image with the same already exist
int number = GetImageDuplicateFilenameNumber(files[i] + std::string("_slice"));
- if (filetype == vvImageReader::IMAGE || filetype == vvImageReader::IMAGEWITHTIME || filetype == vvImageReader::SLICED) {
+ if (filetype == vvImageReader::IMAGE || filetype == vvImageReader::IMAGEWITHTIME || filetype == vvImageReader::SLICED)
SetImageSucceed = imageManager->SetImage(files[i],filetype, number, j);
- } else {
+ else if (filetype == vvImageReader::DICOM)
+ SetImageSucceed = imageManager->SetImages(files,filetype, number, dicomSeriesSelector->IsPatientCoordianteSystemChecked());
+ else
SetImageSucceed = imageManager->SetImages(files,filetype, number);
- }
+
if (!SetImageSucceed) {
QApplication::restoreOverrideCursor();
QString error = "Cannot open file \n";
connect(mSlicerManagers.back(), SIGNAL(ChangeImageWithIndexOffset(vvSlicerManager*,int,int)),
this,SLOT(ChangeImageWithIndexOffset(vvSlicerManager*,int,int)));
connect(mSlicerManagers.back(),SIGNAL(LandmarkAdded()),landmarksPanel,SLOT(AddPoint()));
+ connect(landmarksPanel,SIGNAL(UpdateLandmarkTransform()), mSlicerManagers.back(), SLOT(UpdateLandmark()));
InitSlicers();
numberofsuccesulreads++;
}
sizeMM[i] = inputSize[i]*inputSpacing[i];
NPixel *= inputSize[i];
}
- inputSizeInBytes = GetSizeInBytes(imageSelected->GetActualMemorySize()*1000);
+ inputSizeInBytes = GetSizeInBytes(imageSelected->GetActualMemorySize());
QString dim = QString::number(dimension) + " (";
dim += pixelType + ")";
if (size > 1000000000) {
size /= 1000000000;
result += QString::number(size);
- result += "Gb";//)";
+ result += "GB";//)";
} else if (size > 1000000) {
size /= 1000000;
result += QString::number(size);
- result += "Mb";//)";
+ result += "MB";//)";
} else if (size > 1000) {
size /= 1000;
result += QString::number(size);
- result += "kb";//)";
+ result += "kB";//)";
}
return result;
}
for (unsigned int i = indexMin; i <= indexMax && i < mSlicerManagers.size(); i++) {
if (mSlicerManagers[i] == NULL)
continue;
+ SetWindowLevel(window, mSlicerManagers[i]->GetColorLevel());
mSlicerManagers[i]->SetColorWindow(window);
mSlicerManagers[i]->SetPreset(WL_USER);
mSlicerManagers[i]->Render();
for (unsigned int i = indexMin; i <= indexMax && i < mSlicerManagers.size(); i++) {
if (mSlicerManagers[i] == NULL)
continue;
+ SetWindowLevel(mSlicerManagers[i]->GetColorWindow(), level);
mSlicerManagers[i]->SetColorLevel(level);
mSlicerManagers[i]->SetPreset(WL_USER);
mSlicerManagers[i]->Render();
{
int index = GetSlicerIndexFromItem(DataTree->selectedItems()[0]);
+ if (!(CheckAddedImage(index, "overlay")))
+ return;
+
+ QString Extensions = EXTENSIONS;
+ Extensions += ";;All Files (*)";
+ QStringList files = QFileDialog::getOpenFileNames(this,tr("Load Overlay image"),mInputPathName,Extensions);
+ if (files.isEmpty())
+ return;
+
+ std::vector<std::string> vecFileNames;
+ for (int i = 0; i < files.size(); i++) {
+ vecFileNames.push_back(files[i].toStdString());
+ }
+
+ AddOverlayImage(index,vecFileNames,vvImageReader::IMAGE);
+}
+//------------------------------------------------------------------------------
+
+//------------------------------------------------------------------------------
+bool vvMainWindow::CheckAddedImage(int index, QString imageType)
+{
//check if one overlay image is added
for (int child = 0; child < DataTree->topLevelItem(index)->childCount(); child++)
- if (DataTree->topLevelItem(index)->child(child)->data(1,Qt::UserRole).toString() == "overlay") {
+ if (DataTree->topLevelItem(index)->child(child)->data(1,Qt::UserRole).toString().compare(imageType) == 0) {
QString error = "Cannot add more than one compared image\n";
error += "Please remove first ";
error += DataTree->topLevelItem(index)->child(child)->data(COLUMN_IMAGE_NAME,Qt::DisplayRole).toString();
QMessageBox::information(this,tr("Problem adding compared image !"),error);
- return;
+ return false;
}
-
- QString Extensions = EXTENSIONS;
- Extensions += ";;All Files (*)";
- QStringList files = QFileDialog::getOpenFileNames(this,tr("Load Overlay image"),mInputPathName,Extensions);
- if (files.isEmpty())
- return;
-
- std::vector<std::string> vecFileNames;
- for (int i = 0; i < files.size(); i++) {
- vecFileNames.push_back(files[i].toStdString());
- }
-
- AddOverlayImage(index,vecFileNames,vvImageReader::IMAGE);
+ return true;
}
//------------------------------------------------------------------------------
{
int index = GetSlicerIndexFromItem(DataTree->selectedItems()[0]);
- //check if one fusion image is added
- for (int child = 0; child < DataTree->topLevelItem(index)->childCount(); child++)
- if ( (DataTree->topLevelItem(index)->child(child)->data(1,Qt::UserRole).toString() == "fusion") ||
- (DataTree->topLevelItem(index)->child(child)->data(1,Qt::UserRole).toString() == "fusionSequence") ) {
- QString error = "Cannot add more than one fusion image\n";
- error += "Please remove first ";
- error += DataTree->topLevelItem(index)->child(child)->data(COLUMN_IMAGE_NAME,Qt::DisplayRole).toString();
- QMessageBox::information(this,tr("Problem adding fusion image !"),error);
- return;
- }
+ if (!(CheckAddedImage(index, "fusion")) || !(CheckAddedImage(index, "fusionSequence")))
+ return;
- QString Extensions = EXTENSIONS;
- Extensions += ";;All Files (*)";
- QStringList files = QFileDialog::getOpenFileNames(this,tr("Load Fusion image"),mInputPathName,Extensions);
- if (files.isEmpty())
- return;
+ QString Extensions = EXTENSIONS;
+ Extensions += ";;All Files (*)";
+ QStringList files = QFileDialog::getOpenFileNames(this,tr("Load Fusion image"),mInputPathName,Extensions);
+ if (files.isEmpty())
+ return;
- std::vector<std::string> vecFileNames;
- for (int i = 0; i < files.size(); i++) {
- vecFileNames.push_back(files[i].toStdString());
- }
- AddFusionImage(index,vecFileNames,vvImageReader::IMAGE);
+ std::vector<std::string> vecFileNames;
+ for (int i = 0; i < files.size(); i++) {
+ vecFileNames.push_back(files[i].toStdString());
+ }
+ AddFusionImage(index,vecFileNames,vvImageReader::IMAGE);
}
//------------------------------------------------------------------------------
void vvMainWindow::OpenField()
{
int index = GetSlicerIndexFromItem(DataTree->selectedItems()[0]);
- //check if a vector field has already been added
- for (int child = 0; child < DataTree->topLevelItem(index)->childCount(); child++)
- if (DataTree->topLevelItem(index)->child(child)->data(1,Qt::UserRole).toString() == "vector") {
- QString error = "Cannot add more than one vector field\n";
- error += "Please remove first ";
- error += DataTree->topLevelItem(index)->child(child)->data(COLUMN_IMAGE_NAME,Qt::DisplayRole).toString();
- QMessageBox::information(this,tr("Problem adding vector field!"),error);
- return;
- }
+
+ if (!(CheckAddedImage(index, "vector")))
+ return;
- QString Extensions = "Images ( *.mhd *.mha *.vf *.nii *.nrrd *.nhdr)";
- // Extensions += ";;Images ( *.mha)";
- // Extensions += ";;VF Images ( *.vf)";
- // Extensions += ";;nii Images ( *.nii)";
- // Extensions += ";;nrrd Images ( *.nrrd)";
- // Extensions += ";;nhdr Images ( *.nhdr)";
- Extensions += ";;All Files (*)";
- QString file = QFileDialog::getOpenFileName(this,tr("Load deformation field"),mInputPathName,Extensions);
- if (!file.isEmpty())
- AddField(file,index);
+ QString Extensions = "Images ( *.mhd *.mha *.vf *.nii *.nrrd *.nhdr)";
+ // Extensions += ";;Images ( *.mha)";
+ // Extensions += ";;VF Images ( *.vf)";
+ // Extensions += ";;nii Images ( *.nii)";
+ // Extensions += ";;nrrd Images ( *.nrrd)";
+ // Extensions += ";;nhdr Images ( *.nhdr)";
+ Extensions += ";;All Files (*)";
+ QString file = QFileDialog::getOpenFileName(this,tr("Load deformation field"),mInputPathName,Extensions);
+ if (!file.isEmpty())
+ AddField(file,index);
}
//------------------------------------------------------------------------------
{
//get the index of the slicer manager of the main sequence (CT)
int index = GetSlicerIndexFromItem(DataTree->selectedItems()[0]);
- //check if one overlay image is already associated
- for (int child = 0; child < DataTree->topLevelItem(index)->childCount(); child++)
- if ( (DataTree->topLevelItem(index)->child(child)->data(1,Qt::UserRole).toString() == "fusion") ||
- (DataTree->topLevelItem(index)->child(child)->data(1,Qt::UserRole).toString() == "fusionSequence") ) {
- QString error = "Cannot add more than one compared image\n";
- error += "Please remove first ";
- error += DataTree->topLevelItem(index)->child(child)->data(COLUMN_IMAGE_NAME,Qt::DisplayRole).toString();
- QMessageBox::information(this,tr("Problem adding compared image !"),error);
- return;
- }
- QString Extensions = EXTENSIONS;
- Extensions += ";;All Files (*)";
- QStringList files = QFileDialog::getOpenFileNames(this,tr("Load Overlay image sequence"),mInputPathName,Extensions);
- if (files.isEmpty())
- return;
+ if (!(CheckAddedImage(index, "fusion")) || !(CheckAddedImage(index, "fusionSequence")))
+ return;
- std::vector<std::string> vecFileNames;
- for (int i = 0; i < files.size(); i++) {
- vecFileNames.push_back(files[i].toStdString());
- }
+ QString Extensions = EXTENSIONS;
+ Extensions += ";;All Files (*)";
+ QStringList files = QFileDialog::getOpenFileNames(this,tr("Load Overlay image sequence"),mInputPathName,Extensions);
+ if (files.isEmpty())
+ return;
+
+ std::vector<std::string> vecFileNames;
+ for (int i = 0; i < files.size(); i++) {
+ vecFileNames.push_back(files[i].toStdString());
+ }
- //associate the secondary sequence (US) to the main one
- AddFusionSequence(index,vecFileNames,vvImageReader::MERGEDWITHTIME);
+ //associate the secondary sequence (US) to the main one
+ AddFusionSequence(index,vecFileNames,vvImageReader::MERGEDWITHTIME);
}
//------------------------------------------------------------------------------
//------------------------------------------------------------------------------
void vvMainWindow::SaveScreenshotAllSlices()
{
+#if (VTK_MAJOR_VERSION == 8 && VTK_MINOR_VERSION >= 1) || VTK_MAJOR_VERSION >= 9
+ QVTKOpenGLNativeWidget *widget = NOViewWidget;
+#else
QVTKWidget *widget = NOViewWidget;
+#endif
int index = 0;// GetSlicerIndexFromItem(DataTree->selectedItems()[0]);
vvSlicerManager * SM = mSlicerManagers[index];
// Screenshot
vtkSmartPointer<vtkWindowToImageFilter> windowToImageFilter = vtkSmartPointer<vtkWindowToImageFilter>::New();
windowToImageFilter->SetInput(renderWindow);
+#if (VTK_MAJOR_VERSION >= 8 && VTK_MINOR_VERSION >= 1) || VTK_MAJOR_VERSION >= 9
+ windowToImageFilter->SetScale(1);
+#else
windowToImageFilter->SetMagnification(1);
+#endif
windowToImageFilter->SetInputBufferTypeToRGBA(); //also record the alpha (transparency) channel
windowToImageFilter->Update();
//------------------------------------------------------------------------------
+#if (VTK_MAJOR_VERSION == 8 && VTK_MINOR_VERSION >= 1) || VTK_MAJOR_VERSION >= 9
+void vvMainWindow::SaveScreenshot(QVTKOpenGLNativeWidget *widget)
+#else
void vvMainWindow::SaveScreenshot(QVTKWidget *widget)
+#endif
{
QString Extensions = "Images( *.png);;";
Extensions += "Images( *.jpg);;";
#ifdef VTK_USE_MPEG2_ENCODER
Extensions += ";;Video( *.mpg)";
#endif
-#ifdef CLITK_EXPERIMENTAL
Extensions += ";;Video( *.gif)";
-#endif
int smIndex=GetSlicerIndexFromItem(DataTree->selectedItems()[0]);
QString fileName = QFileDialog::getSaveFileName(this,
if (!fileName.isEmpty()) {
vtkSmartPointer<vtkWindowToImageFilter> w2i = vtkSmartPointer<vtkWindowToImageFilter>::New();
w2i->SetInput(widget->GetRenderWindow());
+#if (VTK_MAJOR_VERSION >= 8 && VTK_MINOR_VERSION >= 1) || VTK_MAJOR_VERSION >= 9
+ w2i->SetScale(1);
+#else
+ w2i->SetMagnification(1);
+#endif
+ w2i->SetInputBufferTypeToRGBA(); //also record the alpha (transparency) channel
w2i->Update();
vtkImageData *image = w2i->GetOutput();
// Video
vtkGenericMovieWriter *vidwriter = NULL;
-#if CLITK_EXPERIMENTAL == 1
if (ext==".gif") {
vvAnimatedGIFWriter *gif = vvAnimatedGIFWriter::New();
vidwriter = gif;
msgBox.addButton(tr("No"), QMessageBox::RejectRole);
gif->SetDither(msgBox.exec() == QMessageBox::AcceptRole);
}
-#endif
#ifdef VTK_USE_VIDEO_FOR_WINDOWS
if (ext==".avi") {
vtkAVIWriter *mpg = vtkAVIWriter::New();
vidwriter = mpg;
mpg->SetQuality(2);
bool ok;
- int fps = QInputDialog::getInteger(this, tr("Number of frames per second"),
+ int fps = QInputDialog::getInt(this, tr("Number of frames per second"),
tr("FPS:"), 5, 0, 1024, 1, &ok);
if(!ok)
fps = 5;
vidwriter = mpg;
mpg->SetQuality(2);
bool ok;
- int fps = QInputDialog::getInteger(this, tr("Number of frames per second"),
+ int fps = QInputDialog::getInt(this, tr("Number of frames per second"),
tr("FPS:"), 5, 0, 1024, 1, &ok);
if(!ok)
fps = 5;
connect(mSlicerManagers.back(), SIGNAL(ChangeImageWithIndexOffset(vvSlicerManager*,int,int)),
this,SLOT(ChangeImageWithIndexOffset(vvSlicerManager*,int,int)));
connect(mSlicerManagers.back(), SIGNAL(LandmarkAdded()),landmarksPanel,SLOT(AddPoint()));
+ connect(landmarksPanel,SIGNAL(UpdateLandmarkTransform()), mSlicerManagers.back(), SLOT(UpdateLandmark()));