connect(actionOpen_Dicom_Struct,SIGNAL(triggered()),this,SLOT(OpenDCStructContour()));
connect(actionOpen_VTK_contour,SIGNAL(triggered()),this,SLOT(OpenVTKContour()));
connect(actionOpen_Multiple_Images_As_One,SIGNAL(triggered()),this,SLOT(MergeImages()));
+ connect(actionSlice_Image_As_Multiple_Images,SIGNAL(triggered()),this,SLOT(SliceImages()));
connect(actionOpen_Image_With_Time,SIGNAL(triggered()),this,SLOT(OpenImageWithTime()));
connect(actionMerge_images_as_n_dim_t, SIGNAL(triggered()), this, SLOT(MergeImagesWithTime()));
connect(actionSave_As,SIGNAL(triggered()),this,SLOT(SaveAs()));
connect(colorMapComboBox,SIGNAL(currentIndexChanged(int)),this,SLOT(UpdateColorMap()));
connect(presetComboBox,SIGNAL(currentIndexChanged(int)),this,SLOT(UpdateWindowLevel()));
connect(inverseButton,SIGNAL(clicked()),this,SLOT(SwitchWindowLevel()));
+ connect(applyWindowLevelToAllButton,SIGNAL(clicked()),this,SLOT(ApplyWindowLevelToAllImages()));
connect(this,SIGNAL(customContextMenuRequested(QPoint)),this,SLOT(ShowContextMenu(QPoint)));
QMenu * rmenu = new QMenu("Recently opened files...");
rmenu->setIcon(QIcon(QString::fromUtf8(":/common/icons/open.png")));
menuFile->insertMenu(actionOpen_Image_With_Time,rmenu);
+ menuFile->insertSeparator(actionOpen_Image_With_Time);
for (std::list<std::string>::iterator i = recent_files.begin(); i!=recent_files.end(); i++) {
QAction* current=new QAction(QIcon(QString::fromUtf8(":/common/icons/open.png")),
(*i).c_str(),this);
}
//------------------------------------------------------------------------------
+//------------------------------------------------------------------------------
+void vvMainWindow::SliceImages()
+{
+ QString Extensions = EXTENSIONS;
+ Extensions += ";;All Files (*)";
+
+ QStringList files = QFileDialog::getOpenFileNames(this,tr("Slice Images"),mInputPathName,Extensions);
+ if (files.isEmpty())
+ return;
+ mInputPathName = itksys::SystemTools::GetFilenamePath(files[0].toStdString()).c_str();
+ std::vector<std::string> vector;
+ for (int i = 0; i < files.size(); i++)
+ vector.push_back(files[i].toStdString());
+ LoadImages(vector, SLICED);
+}
+//------------------------------------------------------------------------------
//------------------------------------------------------------------------------
void vvMainWindow::MergeImagesWithTime()
else
fileSize = 1;
+ // For SLICED, we need the number of slices (ndim and #slices)
+ std::vector<unsigned int> nSlices;
+ nSlices.resize(files.size());
+ std::fill(nSlices.begin(), nSlices.end(), 1);
+ if (filetype == SLICED) {
+ for (int i = 0; i < fileSize; i++) {
+ itk::ImageIOBase::Pointer header = clitk::readImageHeader(files[i]);
+ QApplication::setOverrideCursor(QCursor(Qt::WaitCursor));
+ if (!header) {
+ nSlices[i] = 0;
+ QString error = "Cannot open file \n";
+ error += files[i].c_str();
+ QMessageBox::information(this,tr("Reading problem"),error);
+ return;
+ }
+ if (header->GetNumberOfDimensions() < 3) {
+ nSlices[i] = 0;
+ QString error = "Dimension problem. Cannot slice \n";
+ error += files[i].c_str();
+ QMessageBox::information(this,tr("Reading problem"),error);
+ return;
+ }
+ nSlices[i] = header->GetDimensions( header->GetNumberOfDimensions()-1 );
+ }
+ }
+
//Only add to the list of recently opened files when a single file is opened,
//to avoid polluting the list of recently opened files
if (files.size() == 1) {
progress.SetProgress(i,fileSize);
qApp->processEvents();
- //read the image and put it in mSlicerManagers
- vvSlicerManager* imageManager = new vvSlicerManager(4);
- qApp->processEvents();
-
- bool SetImageSucceed=false;
-
- // Change filename if an image with the same already exist
- int number = GetImageDuplicateFilenameNumber(files[i]);
-
- if (filetype == IMAGE || filetype == IMAGEWITHTIME)
- SetImageSucceed = imageManager->SetImage(files[i],filetype, number);
- else {
- SetImageSucceed = imageManager->SetImages(files,filetype, number);
- }
- if (SetImageSucceed == false) {
- QApplication::restoreOverrideCursor();
- QString error = "Cannot open file \n";
- error += imageManager->GetLastError().c_str();
- QMessageBox::information(this,tr("Reading problem"),error);
- delete imageManager;
- } else {
- mSlicerManagers.push_back(imageManager);
-
- //create an item in the tree with good settings
- QTreeWidgetItem *item = new QTreeWidgetItem();
- item->setData(0,Qt::UserRole,files[i].c_str());
- QFileInfo fileinfo(imageManager->GetFileName().c_str()); //Do not show the path
- item->setData(COLUMN_IMAGE_NAME,Qt::DisplayRole,fileinfo.fileName());
+ for (unsigned int j = 0; j < nSlices[i]; j++) {
+ //read the image and put it in mSlicerManagers
+ vvSlicerManager* imageManager = new vvSlicerManager(4);
qApp->processEvents();
- //Create the buttons for reload and close
- qApp->processEvents();
- QTreePushButton* cButton = new QTreePushButton;
- cButton->setItem(item);
- cButton->setColumn(COLUMN_CLOSE_IMAGE);
- cButton->setToolTip(tr("close image"));
- cButton->setIcon(QIcon(QString::fromUtf8(":/common/icons/exit.png")));
- connect(cButton,SIGNAL(clickedInto(QTreeWidgetItem*, int)),
- this,SLOT(CloseImage(QTreeWidgetItem*, int)));
-
- QTreePushButton* rButton = new QTreePushButton;
- rButton->setItem(item);
- rButton->setColumn(COLUMN_RELOAD_IMAGE);
- rButton->setToolTip(tr("reload image"));
- rButton->setIcon(QIcon(QString::fromUtf8(":/common/icons/rotateright.png")));
- connect(rButton,SIGNAL(clickedInto(QTreeWidgetItem*, int)),
- this,SLOT(ReloadImage(QTreeWidgetItem*, int)));
+ bool SetImageSucceed=false;
- DataTree->addTopLevelItem(item);
- DataTree->setItemWidget(item, COLUMN_CLOSE_IMAGE, cButton);
- DataTree->setItemWidget(item, COLUMN_RELOAD_IMAGE, rButton);
+ // Change filename if an image with the same already exist
+ int number = GetImageDuplicateFilenameNumber(files[i] + std::string("_slice"));
- //set the id of the image
- QString id = files[i].c_str() + QString::number(mSlicerManagers.size()-1);
- item->setData(COLUMN_IMAGE_NAME,Qt::UserRole,id.toStdString().c_str());
- mSlicerManagers.back()->SetId(id.toStdString());
-
- linkPanel->addImage(imageManager->GetFileName(), id.toStdString());
-
- connect(mSlicerManagers.back(), SIGNAL(currentImageChanged(std::string)),
- this,SLOT(CurrentImageChanged(std::string)));
- connect(mSlicerManagers.back(), SIGNAL(UpdatePosition(int, double, double, double, double, double, double, double)),
- this,SLOT(MousePositionChanged(int,double, double, double, double, double, double, double)));
- connect(mSlicerManagers.back(), SIGNAL(UpdateVector(int, double, double, double, double)),
- this, SLOT(VectorChanged(int,double,double,double, double)));
- connect(mSlicerManagers.back(), SIGNAL(UpdateOverlay(int, double, double)),
- this, SLOT(OverlayChanged(int,double,double)));
- connect(mSlicerManagers.back(), SIGNAL(UpdateFusion(int, double)),
- this, SLOT(FusionChanged(int,double)));
- connect(mSlicerManagers.back(), SIGNAL(UpdateWindows(int, int, int)),
- this,SLOT(WindowsChanged(int, int, int)));
- connect(mSlicerManagers.back(), SIGNAL(WindowLevelChanged(double, double,int, int)),
- this,SLOT(WindowLevelChanged(double, double, int, int)));
- connect(mSlicerManagers.back(), SIGNAL(UpdateSlice(int,int)),
- this,SLOT(UpdateSlice(int,int)));
- connect(mSlicerManagers.back(), SIGNAL(UpdateTSlice(int, int)),
- this,SLOT(UpdateTSlice(int, int)));
- connect(mSlicerManagers.back(), SIGNAL(UpdateSliceRange(int,int,int,int,int)),
- this,SLOT(UpdateSliceRange(int,int,int,int,int)));
- connect(mSlicerManagers.back(), SIGNAL(UpdateLinkManager(std::string,int,double,double,double,int)),
- this,SLOT(UpdateLinkManager(std::string,int,double,double,double,int)));
- connect(mSlicerManagers.back(), SIGNAL(UpdateLinkedNavigation(std::string,vvSlicerManager*)),
- this,SLOT(UpdateLinkedNavigation(std::string,vvSlicerManager*)));
- connect(mSlicerManagers.back(), SIGNAL(ChangeImageWithIndexOffset(vvSlicerManager*,int,int)),
- this,SLOT(ChangeImageWithIndexOffset(vvSlicerManager*,int,int)));
- connect(mSlicerManagers.back(),SIGNAL(LandmarkAdded()),landmarksPanel,SLOT(AddPoint()));
- InitSlicers();
+ if (filetype == IMAGE || filetype == IMAGEWITHTIME || filetype == SLICED)
+ SetImageSucceed = imageManager->SetImage(files[i],filetype, number, j);
+ else {
+ SetImageSucceed = imageManager->SetImages(files,filetype, number);
+ }
+ if (SetImageSucceed == false) {
+ QApplication::restoreOverrideCursor();
+ QString error = "Cannot open file \n";
+ error += imageManager->GetLastError().c_str();
+ QMessageBox::information(this,tr("Reading problem"),error);
+ delete imageManager;
+ } else {
+ mSlicerManagers.push_back(imageManager);
+
+ //create an item in the tree with good settings
+ QTreeWidgetItem *item = new QTreeWidgetItem();
+ item->setData(0,Qt::UserRole,files[i].c_str());
+ QFileInfo fileinfo(imageManager->GetFileName().c_str()); //Do not show the path
+ item->setData(COLUMN_IMAGE_NAME,Qt::DisplayRole,fileinfo.fileName());
+ item->setToolTip(COLUMN_IMAGE_NAME,fileinfo.absoluteFilePath());
+ qApp->processEvents();
+
+ //Create the buttons for reload and close
+ qApp->processEvents();
+ QTreePushButton* cButton = new QTreePushButton;
+ cButton->setItem(item);
+ cButton->setColumn(COLUMN_CLOSE_IMAGE);
+ cButton->setToolTip(tr("close image"));
+ cButton->setIcon(QIcon(QString::fromUtf8(":/common/icons/exit.png")));
+ connect(cButton,SIGNAL(clickedInto(QTreeWidgetItem*, int)),
+ this,SLOT(CloseImage(QTreeWidgetItem*, int)));
+
+ QTreePushButton* rButton = new QTreePushButton;
+ rButton->setItem(item);
+ rButton->setColumn(COLUMN_RELOAD_IMAGE);
+ rButton->setToolTip(tr("reload image"));
+ rButton->setIcon(QIcon(QString::fromUtf8(":/common/icons/rotateright.png")));
+ connect(rButton,SIGNAL(clickedInto(QTreeWidgetItem*, int)),
+ this,SLOT(ReloadImage(QTreeWidgetItem*, int)));
+
+ DataTree->addTopLevelItem(item);
+ DataTree->setItemWidget(item, COLUMN_CLOSE_IMAGE, cButton);
+ DataTree->setItemWidget(item, COLUMN_RELOAD_IMAGE, rButton);
+
+ //set the id of the image
+ QString id = files[i].c_str() + QString::number(mSlicerManagers.size()-1);
+ item->setData(COLUMN_IMAGE_NAME,Qt::UserRole,id.toStdString().c_str());
+ mSlicerManagers.back()->SetId(id.toStdString());
+
+ linkPanel->addImage(imageManager->GetFileName(), id.toStdString());
+
+ connect(mSlicerManagers.back(), SIGNAL(currentImageChanged(std::string)),
+ this,SLOT(CurrentImageChanged(std::string)));
+ connect(mSlicerManagers.back(), SIGNAL(UpdatePosition(int, double, double, double, double, double, double, double)),
+ this,SLOT(MousePositionChanged(int,double, double, double, double, double, double, double)));
+ connect(mSlicerManagers.back(), SIGNAL(UpdateVector(int, double, double, double, double)),
+ this, SLOT(VectorChanged(int,double,double,double, double)));
+ connect(mSlicerManagers.back(), SIGNAL(UpdateOverlay(int, double, double)),
+ this, SLOT(OverlayChanged(int,double,double)));
+ connect(mSlicerManagers.back(), SIGNAL(UpdateFusion(int, double)),
+ this, SLOT(FusionChanged(int,double)));
+ connect(mSlicerManagers.back(), SIGNAL(UpdateWindows(int, int, int)),
+ this,SLOT(WindowsChanged(int, int, int)));
+ connect(mSlicerManagers.back(), SIGNAL(WindowLevelChanged(double, double,int, int)),
+ this,SLOT(WindowLevelChanged(double, double, int, int)));
+ connect(mSlicerManagers.back(), SIGNAL(UpdateSlice(int,int)),
+ this,SLOT(UpdateSlice(int,int)));
+ connect(mSlicerManagers.back(), SIGNAL(UpdateTSlice(int, int)),
+ this,SLOT(UpdateTSlice(int, int)));
+ connect(mSlicerManagers.back(), SIGNAL(UpdateSliceRange(int,int,int,int,int)),
+ this,SLOT(UpdateSliceRange(int,int,int,int,int)));
+ connect(mSlicerManagers.back(), SIGNAL(UpdateLinkManager(std::string,int,double,double,double,int)),
+ this,SLOT(UpdateLinkManager(std::string,int,double,double,double,int)));
+ connect(mSlicerManagers.back(), SIGNAL(UpdateLinkedNavigation(std::string,vvSlicerManager*)),
+ this,SLOT(UpdateLinkedNavigation(std::string,vvSlicerManager*)));
+ connect(mSlicerManagers.back(), SIGNAL(ChangeImageWithIndexOffset(vvSlicerManager*,int,int)),
+ this,SLOT(ChangeImageWithIndexOffset(vvSlicerManager*,int,int)));
+ connect(mSlicerManagers.back(),SIGNAL(LandmarkAdded()),landmarksPanel,SLOT(AddPoint()));
+ InitSlicers();
+ }
numberofsuccesulreads++;
}
}
}
//------------------------------------------------------------------------------
+//------------------------------------------------------------------------------
+void vvMainWindow::ApplyWindowLevelToAllImages()
+{
+ for (unsigned int i = 0; i < mSlicerManagers.size(); i++) {
+ if (mSlicerManagers[i] == NULL)
+ continue;
+ mSlicerManagers[i]->SetColorWindow(windowSpinBox->value());
+ mSlicerManagers[i]->SetColorLevel(levelSpinBox->value());
+ mSlicerManagers[i]->SetPreset(6);
+ mSlicerManagers[i]->Render();
+ }
+}
+//------------------------------------------------------------------------------
+
//------------------------------------------------------------------------------
void vvMainWindow::UpdateLinkManager(std::string id, int slicer, double x, double y, double z, int temps)
{
QTreeWidgetItem *item = new QTreeWidgetItem();
item->setData(0,Qt::UserRole,file.toStdString().c_str());
item->setData(1,Qt::UserRole,tr("overlay"));
- item->setData(COLUMN_IMAGE_NAME,Qt::DisplayRole,filename.c_str());
+ QFileInfo fileinfo(file); //Do not show the path
+ item->setData(COLUMN_IMAGE_NAME,Qt::DisplayRole,fileinfo.fileName());
+ item->setToolTip(COLUMN_IMAGE_NAME,fileinfo.absoluteFilePath());
qApp->processEvents();
for (int j = 1; j <= 4; j++) {
QTreeWidgetItem *item = new QTreeWidgetItem();
item->setData(0,Qt::UserRole,file.toStdString().c_str());
item->setData(1,Qt::UserRole,tr("fusion"));
- item->setData(COLUMN_IMAGE_NAME,Qt::DisplayRole,filename.c_str());
+ QFileInfo fileinfo(filename.c_str()); //Do not show the path
+ item->setData(COLUMN_IMAGE_NAME,Qt::DisplayRole,fileinfo.fileName());
+ item->setToolTip(COLUMN_IMAGE_NAME,fileinfo.absoluteFilePath());
qApp->processEvents();
for (int j = 1; j <= 4; j++) {
QTreeWidgetItem *item = new QTreeWidgetItem();
item->setData(0,Qt::UserRole,filename.toStdString().c_str());
item->setData(1,Qt::UserRole,tr("vector"));
- item->setData(COLUMN_IMAGE_NAME,Qt::DisplayRole,filename);
+ QFileInfo fileinfo(filename); //Do not show the path
+ item->setData(COLUMN_IMAGE_NAME,Qt::DisplayRole,fileinfo.fileName());
+ item->setToolTip(COLUMN_IMAGE_NAME,fileinfo.absoluteFilePath());
qApp->processEvents();
for (int j = 1; j <= 4; j++) {
git://git.creatis.insa-lyon.fr / clitk.git / blobdiff