Manage a list of transform for image sequences

[clitk.git] / vv / vvMainWindow.cxx

diff --git a/vv/vvMainWindow.cxx b/vv/vvMainWindow.cxx
index 46b0ecbb2fd9f2bb1a7656876978d531c734631c..4e70cd415ae45f378ab8a823a4c825f1cdacecde 100644 (file)
--- a/vv/vvMainWindow.cxx
+++ b/vv/vvMainWindow.cxx
@@ -100,7 +100,11 @@
 #define COLUMN_RELOAD_IMAGE 6
 #define COLUMN_IMAGE_NAME 7
 
-#define EXTENSIONS "Images ( *.bmp *.png *.jpeg *.jpg *.tif *.mhd *.mha *.hdr *.vox *.his *.xdr *.SCAN *.nii *.nrrd *.nhdr)"
+#if CLITK_PRIVATE_FEATURES
+  #define EXTENSIONS "Images ( *.bmp *.png *.jpeg *.jpg *.tif *.mhd *.mha *.hdr *.vox *.his *.xdr *.SCAN *.nii *.nrrd *.nhdr *.usf)"
+#else
+  #define EXTENSIONS "Images ( *.bmp *.png *.jpeg *.jpg *.tif *.mhd *.mha *.hdr *.vox *.his *.xdr *.SCAN *.nii *.nrrd *.nhdr)"
+#endif
 
 /*Data Tree values
   0,Qt::UserRole full filename
@@ -305,10 +309,10 @@ vvMainWindow::vvMainWindow():vvMainWindowBase()
   connect(levelSpinBox,SIGNAL(editingFinished()),this,SLOT(WindowLevelEdited()));
   connect(colorMapComboBox,SIGNAL(currentIndexChanged(int)),this,SLOT(UpdateColorMap()));
   connect(presetComboBox,SIGNAL(currentIndexChanged(int)),this,SLOT(UpdateWindowLevel()));
+  connect(slicingPresetComboBox, SIGNAL(currentIndexChanged(int)),this,SLOT(UpdateSlicingPreset()));
   connect(inverseButton,SIGNAL(clicked()),this,SLOT(SwitchWindowLevel()));
   connect(applyWindowLevelToAllButton,SIGNAL(clicked()),this,SLOT(ApplyWindowLevelToAllImages()));
 
-
   connect(this,SIGNAL(customContextMenuRequested(QPoint)),this,SLOT(ShowContextMenu(QPoint)));
 
   connect(linkPanel,SIGNAL(addLink(QString,QString)),this,SLOT(AddLink(QString,QString)));
@@ -948,6 +952,8 @@ void vvMainWindow::LoadImages(std::vector<std::string> files, vvImageReader::Loa
                 this,SLOT(UpdateSlice(int,int)));
         connect(mSlicerManagers.back(), SIGNAL(UpdateTSlice(int, int)),
                 this,SLOT(UpdateTSlice(int, int)));
+        connect(mSlicerManagers.back(), SIGNAL(UpdateTSlice(int, int)),
+                this,SLOT(ImageInfoChanged()));
         connect(mSlicerManagers.back(), SIGNAL(UpdateSliceRange(int,int,int,int,int)),
                 this,SLOT(UpdateSliceRange(int,int,int,int,int)));
         connect(mSlicerManagers.back(), SIGNAL(UpdateLinkManager(std::string,int,double,double,double,int)),
@@ -1135,7 +1141,7 @@ void vvMainWindow::ImageInfoChanged()
     infoPanel->setOrigin(GetVectorDoubleAsString(origin));
     infoPanel->setSpacing(GetVectorDoubleAsString(inputSpacing));
     infoPanel->setNPixel(QString::number(NPixel)+" ("+inputSizeInBytes+")");
-    transformation = imageSelected->GetTransform()->GetMatrix();
+    transformation = imageSelected->GetTransform()[mSlicerManagers[index]->GetTSlice()]->GetMatrix();
     infoPanel->setTransformation(Get4x4MatrixDoubleAsString(transformation));
 
     landmarksPanel->SetCurrentLandmarks(mSlicerManagers[index]->GetLandmarks(),
@@ -1172,6 +1178,7 @@ void vvMainWindow::ImageInfoChanged()
       }
     }
     WindowLevelChanged();
+    slicingPresetComboBox->setCurrentIndex(mSlicerManagers[index]->GetSlicingPreset());
 
     if (mSlicerManagers[index]->GetSlicer(0)->GetVF()) {
       overlayPanel->getVFName(mSlicerManagers[index]->GetVFName().c_str());
@@ -1717,6 +1724,16 @@ void vvMainWindow::UpdateWindowLevel()
 }
 //------------------------------------------------------------------------------
 
+//------------------------------------------------------------------------------
+void vvMainWindow::UpdateSlicingPreset()
+{
+  if (DataTree->selectedItems().size()) {
+    int index = GetSlicerIndexFromItem(DataTree->selectedItems()[0]);
+    mSlicerManagers[index]->SetSlicingPreset(vvSlicerManager::SlicingPresetType(slicingPresetComboBox->currentIndex()));
+  }
+}
+//------------------------------------------------------------------------------
+
 //------------------------------------------------------------------------------
 void vvMainWindow::UpdateColorMap()
 {
@@ -2304,7 +2321,8 @@ void vvMainWindow::SaveAs()
       bool bId = true;
       for(int i=0; i<4; i++)
         for(int j=0; j<4; j++) {
-          double elt = mSlicerManagers[index]->GetImage()->GetTransform()->GetMatrix()->GetElement(i,j);
+          // TODO SR and BP: check on the list of transforms and not the first only
+          double elt = mSlicerManagers[index]->GetImage()->GetTransform()[0]->GetMatrix()->GetElement(i,j);
           if(i==j && elt!=1.)
             bId = false;
           if(i!=j && elt!=0.)
@@ -3075,6 +3093,8 @@ vvSlicerManager* vvMainWindow::AddImage(vvImage::Pointer image,std::string filen
           this,SLOT(UpdateSlice(int,int)));
   connect(mSlicerManagers.back(), SIGNAL(UpdateTSlice(int, int)),
           this,SLOT(UpdateTSlice(int, int)));
+  connect(mSlicerManagers.back(), SIGNAL(UpdateTSlice(int, int)),
+          this,SLOT(ImageInfoChanged()));
   connect(mSlicerManagers.back(), SIGNAL(UpdateSliceRange(int,int,int,int,int)),
           this,SLOT(UpdateSliceRange(int,int,int,int,int)));
   connect(mSlicerManagers.back(), SIGNAL(UpdateLinkManager(std::string,int,double,double,double,int)),