#include "vvDeformationDialog.h"
#include "vvImageWarp.h"
#include "vvUtils.h"
-#include "vvMaximumIntensityProjection.h"
#include "vvMidPosition.h"
#include "vvMesh.h"
#include "vvStructSelector.h"
#include "clitkConfiguration.h"
// ITK include
-#include "itkImage.h"
-#include "itkImageFileReader.h"
-#include "itkByteSwapper.h"
-#include "itkCommand.h"
-#include "itkNumericSeriesFileNames.h"
+#include <itkImage.h>
+#include <itkImageFileReader.h>
+#include <itkByteSwapper.h>
+#include <itkCommand.h>
+#include <itkNumericSeriesFileNames.h>
// VTK include
-#include "vtkImageData.h"
-#include "vtkImageActor.h"
-#include "vtkCornerAnnotation.h"
-#include "vtkRenderWindow.h"
-#include "vtkRenderWindowInteractor.h"
-#include "vtkRenderer.h"
-#include "vtkRendererCollection.h"
-#include "vtkWindowToImageFilter.h"
-#include "vtkBMPWriter.h"
-#include "vtkTIFFWriter.h"
-#include "vtkPNMWriter.h"
-#include "vtkPNGWriter.h"
-#include "vtkJPEGWriter.h"
+#include <vtkImageData.h>
+#include <vtkImageActor.h>
+#include <vtkCornerAnnotation.h>
+#include <vtkRenderWindow.h>
+#include <vtkRenderWindowInteractor.h>
+#include <vtkRenderer.h>
+#include <vtkRendererCollection.h>
+#include <vtkWindowToImageFilter.h>
+#include <vtkBMPWriter.h>
+#include <vtkTIFFWriter.h>
+#include <vtkPNMWriter.h>
+#include <vtkPNGWriter.h>
+#include <vtkJPEGWriter.h>
+#include <vtkMPEG2Writer.h>
+#include <vtkMatrix4x4.h>
+#include <vtkTransform.h>
// Standard includes
#include <iostream>
+#include <sstream>
+#include <iomanip>
#define COLUMN_TREE 0
#define COLUMN_UL_VIEW 1
mMainWidget = this;
mCurrentTime = -1;
mCurrentSelectedImageId = "";
+ mCurrentPickedImageId = "";
+ mCurrentPickedImageIndex = 0;
//Init the contextMenu
this->setContextMenuPolicy(Qt::CustomContextMenu);
connect(SEHorizontalSlider,SIGNAL(valueChanged(int)),this,SLOT(SEHorizontalSliderMoved()));
//connect everything
- connect(actionMaximum_Intensity_Projection,SIGNAL(triggered()),this,SLOT(ComputeMIP()));
connect(actionCompute_mid_position_image,SIGNAL(triggered()),this,SLOT(ComputeMidPosition()));
connect(actionDeformable_Registration,SIGNAL(triggered()),this,SLOT(ComputeDeformableRegistration()));
connect(actionWarp_image_with_vector_field,SIGNAL(triggered()),this,SLOT(WarpImage()));
connect(actionOpen_Dicom_Struct,SIGNAL(triggered()),this,SLOT(OpenDCStructContour()));
connect(actionOpen_VTK_contour,SIGNAL(triggered()),this,SLOT(OpenVTKContour()));
connect(actionOpen_Multiple_Images_As_One,SIGNAL(triggered()),this,SLOT(MergeImages()));
+ connect(actionSlice_Image_As_Multiple_Images,SIGNAL(triggered()),this,SLOT(SliceImages()));
connect(actionOpen_Image_With_Time,SIGNAL(triggered()),this,SLOT(OpenImageWithTime()));
connect(actionMerge_images_as_n_dim_t, SIGNAL(triggered()), this, SLOT(MergeImagesWithTime()));
connect(actionSave_As,SIGNAL(triggered()),this,SLOT(SaveAs()));
connect(colorMapComboBox,SIGNAL(currentIndexChanged(int)),this,SLOT(UpdateColorMap()));
connect(presetComboBox,SIGNAL(currentIndexChanged(int)),this,SLOT(UpdateWindowLevel()));
connect(inverseButton,SIGNAL(clicked()),this,SLOT(SwitchWindowLevel()));
+ connect(applyWindowLevelToAllButton,SIGNAL(clicked()),this,SLOT(ApplyWindowLevelToAllImages()));
connect(this,SIGNAL(customContextMenuRequested(QPoint)),this,SLOT(ShowContextMenu(QPoint)));
connect(linkPanel,SIGNAL(addLink(QString,QString)),this,SLOT(AddLink(QString,QString)));
connect(linkPanel,SIGNAL(removeLink(QString,QString)),this,SLOT(RemoveLink(QString,QString)));
- connect(overlayPanel,SIGNAL(VFPropertyUpdated(int,int,int,int)),this,SLOT(SetVFProperty(int,int,int,int)));
+ connect(overlayPanel,SIGNAL(VFPropertyUpdated(int,int,int,int,double,double,double)),this,SLOT(SetVFProperty(int,int,int,int,double,double,double)));
connect(overlayPanel,SIGNAL(OverlayPropertyUpdated(int)),this,SLOT(SetOverlayProperty(int)));
connect(overlayPanel,SIGNAL(FusionPropertyUpdated(int,int,double,double)),
this,SLOT(SetFusionProperty(int,int,double,double)));
QMenu * rmenu = new QMenu("Recently opened files...");
rmenu->setIcon(QIcon(QString::fromUtf8(":/common/icons/open.png")));
menuFile->insertMenu(actionOpen_Image_With_Time,rmenu);
+ menuFile->insertSeparator(actionOpen_Image_With_Time);
for (std::list<std::string>::iterator i = recent_files.begin(); i!=recent_files.end(); i++) {
QAction* current=new QAction(QIcon(QString::fromUtf8(":/common/icons/open.png")),
(*i).c_str(),this);
if (!CLITK_EXPERIMENTAL)
menuExperimental->menuAction()->setVisible(false);
+
+
+ QTimer * timerMemory = new QTimer(this);
+ //timerMemory->setInterval(5);
+ connect(timerMemory, SIGNAL(timeout()), this, SLOT(UpdateMemoryUsage()));
+ timerMemory->start(2000);
+
}
//------------------------------------------------------------------------------
//------------------------------------------------------------------------------
-void vvMainWindow::ComputeMIP()
+void vvMainWindow::UpdateMemoryUsage()
{
- vvMaximumIntensityProjection mip;
- vvSlicerManager* selected_slicer = mSlicerManagers[GetSlicerIndexFromItem(DataTree->selectedItems()[0])];
- QFileInfo info(selected_slicer->GetFileName().c_str());
- mip.Compute(selected_slicer);
- if (!mip.error)
- AddImage(mip.GetOutput(),info.path().toStdString()+"/"+info.completeBaseName().toStdString()+"_mip.mhd");
+ // clitk::PrintMemory(true);
+ if (clitk::GetMemoryUsageInMb() == 0) infoPanel->setMemoryInMb("NA");
+ else infoPanel->setMemoryInMb(QString::number(clitk::GetMemoryUsageInMb())+" MiB");
}
//------------------------------------------------------------------------------
}
//------------------------------------------------------------------------------
+//------------------------------------------------------------------------------
+void vvMainWindow::SliceImages()
+{
+ QString Extensions = EXTENSIONS;
+ Extensions += ";;All Files (*)";
+
+ QStringList files = QFileDialog::getOpenFileNames(this,tr("Slice Images"),mInputPathName,Extensions);
+ if (files.isEmpty())
+ return;
+ mInputPathName = itksys::SystemTools::GetFilenamePath(files[0].toStdString()).c_str();
+ std::vector<std::string> vector;
+ for (int i = 0; i < files.size(); i++)
+ vector.push_back(files[i].toStdString());
+ LoadImages(vector, SLICED);
+}
+//------------------------------------------------------------------------------
//------------------------------------------------------------------------------
void vvMainWindow::MergeImagesWithTime()
else
fileSize = 1;
+ // For SLICED, we need the number of slices (ndim and #slices)
+ std::vector<unsigned int> nSlices;
+ nSlices.resize(files.size());
+ std::fill(nSlices.begin(), nSlices.end(), 1);
+ if (filetype == SLICED) {
+ for (int i = 0; i < fileSize; i++) {
+ itk::ImageIOBase::Pointer header = clitk::readImageHeader(files[i]);
+ QApplication::setOverrideCursor(QCursor(Qt::WaitCursor));
+ if (!header) {
+ nSlices[i] = 0;
+ QString error = "Cannot open file \n";
+ error += files[i].c_str();
+ QMessageBox::information(this,tr("Reading problem"),error);
+ return;
+ }
+ if (header->GetNumberOfDimensions() < 3) {
+ nSlices[i] = 0;
+ QString error = "Dimension problem. Cannot slice \n";
+ error += files[i].c_str();
+ QMessageBox::information(this,tr("Reading problem"),error);
+ return;
+ }
+ nSlices[i] = header->GetDimensions( header->GetNumberOfDimensions()-1 );
+ }
+ }
+
//Only add to the list of recently opened files when a single file is opened,
//to avoid polluting the list of recently opened files
if (files.size() == 1) {
progress.SetProgress(i,fileSize);
qApp->processEvents();
- //read the image and put it in mSlicerManagers
- vvSlicerManager* imageManager = new vvSlicerManager(4);
- qApp->processEvents();
-
- bool SetImageSucceed=false;
-
- // Change filename if an image with the same already exist
- int number = GetImageDuplicateFilenameNumber(files[i]);
-
- if (filetype == IMAGE || filetype == IMAGEWITHTIME)
- SetImageSucceed = imageManager->SetImage(files[i],filetype, number);
- else {
- SetImageSucceed = imageManager->SetImages(files,filetype, number);
- }
- if (SetImageSucceed == false) {
- QApplication::restoreOverrideCursor();
- QString error = "Cannot open file \n";
- error += imageManager->GetLastError().c_str();
- QMessageBox::information(this,tr("Reading problem"),error);
- delete imageManager;
- } else {
- mSlicerManagers.push_back(imageManager);
-
- //create an item in the tree with good settings
- QTreeWidgetItem *item = new QTreeWidgetItem();
- item->setData(0,Qt::UserRole,files[i].c_str());
- QFileInfo fileinfo(imageManager->GetFileName().c_str()); //Do not show the path
- item->setData(COLUMN_IMAGE_NAME,Qt::DisplayRole,fileinfo.fileName());
- qApp->processEvents();
-
- //Create the buttons for reload and close
+ for (unsigned int j = 0; j < nSlices[i]; j++) {
+ //read the image and put it in mSlicerManagers
+ vvSlicerManager* imageManager = new vvSlicerManager(4);
qApp->processEvents();
- QTreePushButton* cButton = new QTreePushButton;
- cButton->setItem(item);
- cButton->setColumn(COLUMN_CLOSE_IMAGE);
- cButton->setToolTip(tr("close image"));
- cButton->setIcon(QIcon(QString::fromUtf8(":/common/icons/exit.png")));
- connect(cButton,SIGNAL(clickedInto(QTreeWidgetItem*, int)),
- this,SLOT(CloseImage(QTreeWidgetItem*, int)));
- QTreePushButton* rButton = new QTreePushButton;
- rButton->setItem(item);
- rButton->setColumn(COLUMN_RELOAD_IMAGE);
- rButton->setToolTip(tr("reload image"));
- rButton->setIcon(QIcon(QString::fromUtf8(":/common/icons/rotateright.png")));
- connect(rButton,SIGNAL(clickedInto(QTreeWidgetItem*, int)),
- this,SLOT(ReloadImage(QTreeWidgetItem*, int)));
+ bool SetImageSucceed=false;
- DataTree->addTopLevelItem(item);
- DataTree->setItemWidget(item, COLUMN_CLOSE_IMAGE, cButton);
- DataTree->setItemWidget(item, COLUMN_RELOAD_IMAGE, rButton);
+ // Change filename if an image with the same already exist
+ int number = GetImageDuplicateFilenameNumber(files[i] + std::string("_slice"));
- //set the id of the image
- QString id = files[i].c_str() + QString::number(mSlicerManagers.size()-1);
- item->setData(COLUMN_IMAGE_NAME,Qt::UserRole,id.toStdString().c_str());
- mSlicerManagers.back()->SetId(id.toStdString());
-
- linkPanel->addImage(imageManager->GetFileName(), id.toStdString());
-
- connect(mSlicerManagers.back(), SIGNAL(currentImageChanged(std::string)),
- this,SLOT(CurrentImageChanged(std::string)));
- connect(mSlicerManagers.back(), SIGNAL(UpdatePosition(int, double, double, double, double, double, double, double)),
- this,SLOT(MousePositionChanged(int,double, double, double, double, double, double, double)));
- connect(mSlicerManagers.back(), SIGNAL(UpdateVector(int, double, double, double, double)),
- this, SLOT(VectorChanged(int,double,double,double, double)));
- connect(mSlicerManagers.back(), SIGNAL(UpdateOverlay(int, double, double)),
- this, SLOT(OverlayChanged(int,double,double)));
- connect(mSlicerManagers.back(), SIGNAL(UpdateFusion(int, double)),
- this, SLOT(FusionChanged(int,double)));
- connect(mSlicerManagers.back(), SIGNAL(UpdateWindows(int, int, int)),
- this,SLOT(WindowsChanged(int, int, int)));
- connect(mSlicerManagers.back(), SIGNAL(WindowLevelChanged(double, double,int, int)),
- this,SLOT(WindowLevelChanged(double, double, int, int)));
- connect(mSlicerManagers.back(), SIGNAL(UpdateSlice(int,int)),
- this,SLOT(UpdateSlice(int,int)));
- connect(mSlicerManagers.back(), SIGNAL(UpdateTSlice(int, int)),
- this,SLOT(UpdateTSlice(int, int)));
- connect(mSlicerManagers.back(), SIGNAL(UpdateSliceRange(int,int,int,int,int)),
- this,SLOT(UpdateSliceRange(int,int,int,int,int)));
- connect(mSlicerManagers.back(), SIGNAL(UpdateLinkManager(std::string,int,double,double,double,int)),
- this,SLOT(UpdateLinkManager(std::string,int,double,double,double,int)));
- connect(mSlicerManagers.back(), SIGNAL(UpdateLinkedNavigation(std::string,vvSlicerManager*)),
- this,SLOT(UpdateLinkedNavigation(std::string,vvSlicerManager*)));
- connect(mSlicerManagers.back(), SIGNAL(ChangeImageWithIndexOffset(vvSlicerManager*,int,int)),
- this,SLOT(ChangeImageWithIndexOffset(vvSlicerManager*,int,int)));
- connect(mSlicerManagers.back(),SIGNAL(LandmarkAdded()),landmarksPanel,SLOT(AddPoint()));
- InitSlicers();
- numberofsuccesulreads++;
+ if (filetype == IMAGE || filetype == IMAGEWITHTIME || filetype == SLICED)
+ SetImageSucceed = imageManager->SetImage(files[i],filetype, number, j);
+ else {
+ SetImageSucceed = imageManager->SetImages(files,filetype, number);
+ }
+ if (!SetImageSucceed) {
+ QApplication::restoreOverrideCursor();
+ QString error = "Cannot open file \n";
+ error += imageManager->GetLastError().c_str();
+ QMessageBox::information(this,tr("Reading problem"),error);
+ delete imageManager;
+ } else {
+ mSlicerManagers.push_back(imageManager);
+
+ //create an item in the tree with good settings
+ QTreeWidgetItem *item = new QTreeWidgetItem();
+ item->setData(0,Qt::UserRole,files[i].c_str());
+ QFileInfo fileinfo(imageManager->GetFileName().c_str()); //Do not show the path
+ item->setData(COLUMN_IMAGE_NAME,Qt::DisplayRole,fileinfo.fileName());
+ item->setToolTip(COLUMN_IMAGE_NAME,fileinfo.absoluteFilePath());
+ qApp->processEvents();
+
+ //Create the buttons for reload and close
+ qApp->processEvents();
+ QTreePushButton* cButton = new QTreePushButton;
+ cButton->setItem(item);
+ cButton->setColumn(COLUMN_CLOSE_IMAGE);
+ cButton->setToolTip(tr("close image"));
+ cButton->setIcon(QIcon(QString::fromUtf8(":/common/icons/exit.png")));
+ connect(cButton,SIGNAL(clickedInto(QTreeWidgetItem*, int)),
+ this,SLOT(CloseImage(QTreeWidgetItem*, int)));
+
+ QTreePushButton* rButton = new QTreePushButton;
+ rButton->setItem(item);
+ rButton->setColumn(COLUMN_RELOAD_IMAGE);
+ rButton->setToolTip(tr("reload image"));
+ rButton->setIcon(QIcon(QString::fromUtf8(":/common/icons/rotateright.png")));
+ connect(rButton,SIGNAL(clickedInto(QTreeWidgetItem*, int)),
+ this,SLOT(ReloadImage(QTreeWidgetItem*, int)));
+
+ DataTree->addTopLevelItem(item);
+ DataTree->setItemWidget(item, COLUMN_CLOSE_IMAGE, cButton);
+ DataTree->setItemWidget(item, COLUMN_RELOAD_IMAGE, rButton);
+
+ //set the id of the image
+ QString id = files[i].c_str() + QString::number(mSlicerManagers.size()-1);
+ item->setData(COLUMN_IMAGE_NAME,Qt::UserRole,id.toStdString().c_str());
+ mSlicerManagers.back()->SetId(id.toStdString());
+
+ linkPanel->addImage(imageManager->GetFileName(), id.toStdString());
+
+ connect(mSlicerManagers.back(), SIGNAL(currentImageChanged(std::string)),
+ this,SLOT(CurrentImageChanged(std::string)));
+ connect(mSlicerManagers.back(), SIGNAL(currentPickedImageChanged(std::string)),
+ this, SLOT(CurrentPickedImageChanged(std::string)));
+ connect(mSlicerManagers.back(), SIGNAL(UpdatePosition(int, double, double, double, double, double, double, double)),
+ this,SLOT(MousePositionChanged(int,double, double, double, double, double, double, double)));
+ connect(mSlicerManagers.back(), SIGNAL(UpdateVector(int, double, double, double, double)),
+ this, SLOT(VectorChanged(int,double,double,double, double)));
+ connect(mSlicerManagers.back(), SIGNAL(UpdateOverlay(int, double, double)),
+ this, SLOT(OverlayChanged(int,double,double)));
+ connect(mSlicerManagers.back(), SIGNAL(UpdateFusion(int, double)),
+ this, SLOT(FusionChanged(int,double)));
+ connect(mSlicerManagers.back(), SIGNAL(UpdateWindows(int, int, int)),
+ this,SLOT(WindowsChanged(int, int, int)));
+ connect(mSlicerManagers.back(), SIGNAL(WindowLevelChanged(double, double,int, int)),
+ this,SLOT(WindowLevelChanged(double, double, int, int)));
+ connect(mSlicerManagers.back(), SIGNAL(UpdateSlice(int,int)),
+ this,SLOT(UpdateSlice(int,int)));
+ connect(mSlicerManagers.back(), SIGNAL(UpdateTSlice(int, int)),
+ this,SLOT(UpdateTSlice(int, int)));
+ connect(mSlicerManagers.back(), SIGNAL(UpdateSliceRange(int,int,int,int,int)),
+ this,SLOT(UpdateSliceRange(int,int,int,int,int)));
+ connect(mSlicerManagers.back(), SIGNAL(UpdateLinkManager(std::string,int,double,double,double,int)),
+ this,SLOT(UpdateLinkManager(std::string,int,double,double,double,int)));
+ connect(mSlicerManagers.back(), SIGNAL(UpdateLinkedNavigation(std::string,vvSlicerManager*,vvSlicer*)),
+ this,SLOT(UpdateLinkedNavigation(std::string,vvSlicerManager*,vvSlicer*)));
+ connect(mSlicerManagers.back(), SIGNAL(ChangeImageWithIndexOffset(vvSlicerManager*,int,int)),
+ this,SLOT(ChangeImageWithIndexOffset(vvSlicerManager*,int,int)));
+ connect(mSlicerManagers.back(),SIGNAL(LandmarkAdded()),landmarksPanel,SLOT(AddPoint()));
+ InitSlicers();
+ numberofsuccesulreads++;
+ }
}
}
if (numberofsuccesulreads) {
// Try to guess default WindowLevel
double range[2];
mSlicerManagers.back()->GetImage()->GetFirstVTKImageData()->GetScalarRange(range);
- // DD(range[0]);
- // DD(range[1]);
if ((range[0] == 0) && (range[1] == 1)) {
presetComboBox->setCurrentIndex(5);// binary
} else {
//------------------------------------------------------------------------------
void vvMainWindow::CurrentImageChanged(std::string id)
{
- // DD("CurrentImageChanged");
-// DD(id);
-// DD(mCurrentSelectedImageId);
if (id == mCurrentSelectedImageId) return; // Do nothing
int selected = 0;
for (int i = 0; i < DataTree->topLevelItemCount(); i++) {
}
DataTree->topLevelItem(selected)->setSelected(1);
- // DD(mSlicerManagers[selected]->GetFileName());
mCurrentSelectedImageId = id;
emit SelectedImageHasChanged(mSlicerManagers[selected]);
}
//------------------------------------------------------------------------------
+//------------------------------------------------------------------------------
+void vvMainWindow::CurrentPickedImageChanged(std::string id)
+{
+ if (id == mCurrentPickedImageId) return; // Do nothing
+ int selected = 0;
+ for (int i = 0; i < DataTree->topLevelItemCount(); i++) {
+ if (DataTree->topLevelItem(i)->data(COLUMN_IMAGE_NAME,Qt::UserRole).toString().toStdString() == id) {
+ selected = i;
+ } else {
+ DataTree->topLevelItem(i)->setSelected(0);
+ }
+ for (int child = 0; child < DataTree->topLevelItem(i)->childCount(); child++)
+ DataTree->topLevelItem(i)->child(child)->setSelected(0);
+
+ }
+ DataTree->topLevelItem(selected)->setSelected(1);
+ mCurrentPickedImageId = id;
+ mCurrentPickedImageIndex = selected;
+}
+//------------------------------------------------------------------------------
+
//------------------------------------------------------------------------------
void vvMainWindow::ImageInfoChanged()
{
std::vector<double> inputSpacing;
std::vector<int> inputSize;
std::vector<double> sizeMM;
+ vtkSmartPointer<vtkMatrix4x4> transformation;
int dimension=0;
QString pixelType;
QString inputSizeInBytes;
//read image header
int NPixel = 1;
+ vvImage::Pointer imageSelected;
if (DataTree->topLevelItem(index) == DataTree->selectedItems()[0]) {
- vvImage::Pointer imageSelected = mSlicerManagers[index]->GetSlicer(0)->GetImage();
+ imageSelected = mSlicerManagers[index]->GetSlicer(0)->GetImage();
dimension = imageSelected->GetNumberOfDimensions();
origin.resize(dimension);
inputSpacing.resize(dimension);
}
inputSizeInBytes = GetSizeInBytes(imageSelected->GetActualMemorySize()*1000);
} else if (DataTree->selectedItems()[0]->data(1,Qt::UserRole).toString() == "vector") {
- vvImage::Pointer imageSelected = mSlicerManagers[index]->GetSlicer(0)->GetVF();
+ imageSelected = mSlicerManagers[index]->GetSlicer(0)->GetVF();
dimension = imageSelected->GetNumberOfDimensions();
origin.resize(dimension);
inputSpacing.resize(dimension);
}
inputSizeInBytes = GetSizeInBytes(imageSelected->GetActualMemorySize()*1000);
} else if (DataTree->selectedItems()[0]->data(1,Qt::UserRole).toString() == "overlay") {
- vvImage::Pointer imageSelected = mSlicerManagers[index]->GetSlicer(0)->GetOverlay();
+ imageSelected = mSlicerManagers[index]->GetSlicer(0)->GetOverlay();
dimension = imageSelected->GetNumberOfDimensions();
origin.resize(dimension);
inputSpacing.resize(dimension);
}
inputSizeInBytes = GetSizeInBytes(imageSelected->GetActualMemorySize()*1000);
} else if (DataTree->selectedItems()[0]->data(1,Qt::UserRole).toString() == "fusion") {
- vvImage::Pointer imageSelected = mSlicerManagers[index]->GetSlicer(0)->GetFusion();
+ imageSelected = mSlicerManagers[index]->GetSlicer(0)->GetFusion();
dimension = imageSelected->GetNumberOfDimensions();
origin.resize(dimension);
inputSpacing.resize(dimension);
infoPanel->setOrigin(GetVectorDoubleAsString(origin));
infoPanel->setSpacing(GetVectorDoubleAsString(inputSpacing));
infoPanel->setNPixel(QString::number(NPixel)+" ("+inputSizeInBytes+")");
+ transformation = imageSelected->GetTransform()->GetMatrix();
+ infoPanel->setTransformation(Get4x4MatrixDoubleAsString(transformation));
landmarksPanel->SetCurrentLandmarks(mSlicerManagers[index]->GetLandmarks(),
mSlicerManagers[index]->GetSlicer(0)->GetImage()->GetVTKImages().size());
}
windowSpinBox->setValue(mSlicerManagers[index]->GetColorWindow());
levelSpinBox->setValue(mSlicerManagers[index]->GetColorLevel());
- // DD(mSlicerManagers[index]->GetColorMap());
- // DD(mSlicerManagers[index]->GetPreset());
presetComboBox->setCurrentIndex(mSlicerManagers[index]->GetPreset());
colorMapComboBox->setCurrentIndex(mSlicerManagers[index]->GetColorMap());
}
//------------------------------------------------------------------------------
+//------------------------------------------------------------------------------
+QString vvMainWindow::Get4x4MatrixDoubleAsString(vtkSmartPointer<vtkMatrix4x4> matrix)
+{
+ std::ostringstream strmatrix;
+
+ for (unsigned int i = 0; i < 4; i++) {
+ for (unsigned int j = 0; j < 4; j++) {
+ strmatrix.flags(ios::showpos);
+ strmatrix.width(10);
+ strmatrix.precision(3);
+ strmatrix.setf(ios::fixed,ios::floatfield);
+ strmatrix.fill(' ');
+ strmatrix << std::left << matrix->GetElement(i, j);
+ //strmatrix.width(10);
+ strmatrix << " ";
+ }
+ strmatrix << std::endl;
+ }
+ QString result = strmatrix.str().c_str();
+ return result;
+}
+//------------------------------------------------------------------------------
+
//------------------------------------------------------------------------------
QString vvMainWindow::GetVectorDoubleAsString(std::vector<double> vectorDouble)
{
InitDisplay();
}
}
+ ImageInfoChanged();
}
//------------------------------------------------------------------------------
mSlicerManagers[index]->SetColorLevel(levelSpinBox->value());
mSlicerManagers[index]->SetPreset(presetComboBox->currentIndex());
mSlicerManagers[index]->Render();
+ windowSpinBox->setValue(mSlicerManagers[index]->GetColorWindow());
+ levelSpinBox->setValue(mSlicerManagers[index]->GetColorLevel());
}
}
//------------------------------------------------------------------------------
}
//------------------------------------------------------------------------------
+//------------------------------------------------------------------------------
+void vvMainWindow::ApplyWindowLevelToAllImages()
+{
+ for (unsigned int i = 0; i < mSlicerManagers.size(); i++) {
+ if (mSlicerManagers[i] == NULL)
+ continue;
+ mSlicerManagers[i]->SetColorWindow(windowSpinBox->value());
+ mSlicerManagers[i]->SetColorLevel(levelSpinBox->value());
+ mSlicerManagers[i]->SetPreset(6);
+ mSlicerManagers[i]->Render();
+ }
+}
+//------------------------------------------------------------------------------
+
//------------------------------------------------------------------------------
void vvMainWindow::UpdateLinkManager(std::string id, int slicer, double x, double y, double z, int temps)
{
//------------------------------------------------------------------------------
//------------------------------------------------------------------------------
-void vvMainWindow::UpdateLinkedNavigation(std::string id, vvSlicerManager * sm)
+void vvMainWindow::UpdateLinkedNavigation(std::string id, vvSlicerManager * sm, vvSlicer* refSlicer)
{
for (unsigned int i = 0; i < mSlicerManagers.size(); i++) {
if (id == mSlicerManagers[i]->GetId()) {
- mSlicerManagers[i]->UpdateLinkedNavigation(sm->GetSlicer(0));
+ mSlicerManagers[i]->UpdateLinkedNavigation(refSlicer);
}
}
}
QTreeWidgetItem *item = new QTreeWidgetItem();
item->setData(0,Qt::UserRole,file.toStdString().c_str());
item->setData(1,Qt::UserRole,tr("overlay"));
- item->setData(COLUMN_IMAGE_NAME,Qt::DisplayRole,filename.c_str());
+ QFileInfo fileinfo(file); //Do not show the path
+ item->setData(COLUMN_IMAGE_NAME,Qt::DisplayRole,fileinfo.fileName());
+ item->setToolTip(COLUMN_IMAGE_NAME,fileinfo.absoluteFilePath());
qApp->processEvents();
for (int j = 1; j <= 4; j++) {
//------------------------------------------------------------------------------
void vvMainWindow::AddROI(int index, QString file)
{
- DD("AddImageAndROI");
/*
// Get slice manager
// Create roi in new tool
vvToolStructureSetManager::AddImage(mCurrentSlicerManager, roi);
-*/
+ */
}
//------------------------------------------------------------------------------
QTreeWidgetItem *item = new QTreeWidgetItem();
item->setData(0,Qt::UserRole,file.toStdString().c_str());
item->setData(1,Qt::UserRole,tr("fusion"));
- item->setData(COLUMN_IMAGE_NAME,Qt::DisplayRole,filename.c_str());
+ QFileInfo fileinfo(filename.c_str()); //Do not show the path
+ item->setData(COLUMN_IMAGE_NAME,Qt::DisplayRole,fileinfo.fileName());
+ item->setToolTip(COLUMN_IMAGE_NAME,fileinfo.absoluteFilePath());
qApp->processEvents();
for (int j = 1; j <= 4; j++) {
QTreeWidgetItem *item = new QTreeWidgetItem();
item->setData(0,Qt::UserRole,filename.toStdString().c_str());
item->setData(1,Qt::UserRole,tr("vector"));
- item->setData(COLUMN_IMAGE_NAME,Qt::DisplayRole,filename);
+ QFileInfo fileinfo(filename); //Do not show the path
+ item->setData(COLUMN_IMAGE_NAME,Qt::DisplayRole,fileinfo.fileName());
+ item->setToolTip(COLUMN_IMAGE_NAME,fileinfo.absoluteFilePath());
qApp->processEvents();
for (int j = 1; j <= 4; j++) {
//------------------------------------------------------------------------------
-void vvMainWindow::SetVFProperty(int subsampling, int scale, int log, int width)
+void vvMainWindow::SetVFProperty(int subsampling, int scale, int log, int width, double r, double g, double b)
{
int index = GetSlicerIndexFromItem(DataTree->selectedItems()[0]);
if (mSlicerManagers[index]->GetSlicer(0)->GetVF()) {
mSlicerManagers[index]->GetSlicer(i)->SetVFSubSampling(subsampling);
mSlicerManagers[index]->GetSlicer(i)->SetVFScale(scale);
mSlicerManagers[index]->GetSlicer(i)->SetVFWidth(width);
+ mSlicerManagers[index]->GetSlicer(i)->SetVFColor(r,g,b);
if (log > 0)
mSlicerManagers[index]->GetSlicer(i)->SetVFLog(1);
else
std::string action = "Saving";
vvProgressDialog progress("Saving "+fileName.toStdString());
qApp->processEvents();
- vvImageWriter *writer = new vvImageWriter;
+ vvImageWriter::Pointer writer = vvImageWriter::New();
writer->SetOutputFileName(fileName.toStdString());
writer->SetInput(mSlicerManagers[index]->GetImage());
writer->Update();
//------------------------------------------------------------------------------
void vvMainWindow::AddLink(QString image1,QString image2)
{
+ unsigned int sm1 = 0;
+ unsigned int sm2 = 0;
+
for (unsigned int i = 0; i < mSlicerManagers.size(); i++) {
if (image1.toStdString() == mSlicerManagers[i]->GetId()) {
mSlicerManagers[i]->AddLink(image2.toStdString());
+ sm1 = i;
}
if (image2.toStdString() == mSlicerManagers[i]->GetId()) {
mSlicerManagers[i]->AddLink(image1.toStdString());
+ sm2 = i;
}
}
+
+ if (linkPanel->isLinkAll()) {
+ emit UpdateLinkedNavigation(mSlicerManagers[sm1]->GetId(), mSlicerManagers[mCurrentPickedImageIndex], mSlicerManagers[mCurrentPickedImageIndex]->GetSlicer(0));
+ emit UpdateLinkedNavigation(mSlicerManagers[sm2]->GetId(), mSlicerManagers[mCurrentPickedImageIndex], mSlicerManagers[mCurrentPickedImageIndex]->GetSlicer(0));
+ }
+ else {
+ emit UpdateLinkedNavigation(mSlicerManagers[sm2]->GetId(), mSlicerManagers[sm1], mSlicerManagers[sm1]->GetSlicer(0));
+ }
}
+
//------------------------------------------------------------------------------
//------------------------------------------------------------------------------
void vvMainWindow::RemoveLink(QString image1,QString image2)
{
- // DD("vvMainWindow:RemoveLink");
for (unsigned int i = 0; i < mSlicerManagers.size(); i++) {
if (image1.toStdString() == mSlicerManagers[i]->GetId()) {
mSlicerManagers[i]->RemoveLink(image2.toStdString());
void vvMainWindow::SOVerticalSliderChanged()
{
static int value=-1;
- // DD(value);
-// DD(SOVerticalSlider->value());
if (value == SOVerticalSlider->value()) return;
else value = SOVerticalSlider->value();
//int value = SOVerticalSlider->value();
//------------------------------------------------------------------------------
void vvMainWindow::SaveNOScreenshot()
{
- vtkWindowToImageFilter *w2i = vtkWindowToImageFilter::New();
- w2i->SetInput(NOViewWidget->GetRenderWindow());
- w2i->Update();
- SaveScreenshot(w2i->GetOutput());
- w2i->Delete();
+ SaveScreenshot(NOViewWidget);
}
//------------------------------------------------------------------------------
//------------------------------------------------------------------------------
void vvMainWindow::SaveNEScreenshot()
{
- vtkWindowToImageFilter *w2i = vtkWindowToImageFilter::New();
- w2i->SetInput(NEViewWidget->GetRenderWindow());
- w2i->Update();
- SaveScreenshot(w2i->GetOutput());
- w2i->Delete();
+ SaveScreenshot(NEViewWidget);
}
//------------------------------------------------------------------------------
//------------------------------------------------------------------------------
void vvMainWindow::SaveSOScreenshot()
{
- vtkWindowToImageFilter *w2i = vtkWindowToImageFilter::New();
- w2i->SetInput(SOViewWidget->GetRenderWindow());
- w2i->Update();
- SaveScreenshot(w2i->GetOutput());
- w2i->Delete();
+ SaveScreenshot(SOViewWidget);
}
//------------------------------------------------------------------------------
//------------------------------------------------------------------------------
void vvMainWindow::SaveSEScreenshot()
{
- vtkWindowToImageFilter *w2i = vtkWindowToImageFilter::New();
- w2i->SetInput(SEViewWidget->GetRenderWindow());
- w2i->Update();
- SaveScreenshot(w2i->GetOutput());
- w2i->Delete();
+ SaveScreenshot(SEViewWidget);
}
//------------------------------------------------------------------------------
//------------------------------------------------------------------------------
-void vvMainWindow::SaveScreenshot(vtkImageData* image)
+void vvMainWindow::SaveScreenshot(QVTKWidget *widget)
{
QString Extensions = "Images( *.png);;";
Extensions += "Images( *.jpg);;";
Extensions += "Images( *.bmp);;";
Extensions += "Images( *.tif);;";
Extensions += "Images( *.ppm)";
+#ifdef VTK_USE_MPEG2_ENCODER
+ Extensions += "Images( *.mpg)";
+#endif
+
+ int smIndex=GetSlicerIndexFromItem(DataTree->selectedItems()[0]);
QString fileName = QFileDialog::getSaveFileName(this,
tr("Save As"),
- itksys::SystemTools::GetFilenamePath(
- mSlicerManagers[0]->GetFileName()).c_str(),
+ itksys::SystemTools::GetFilenamePath(mSlicerManagers[smIndex]->GetFileName()).c_str(),
Extensions);
+
if (!fileName.isEmpty()) {
+ vtkSmartPointer<vtkWindowToImageFilter> w2i = vtkSmartPointer<vtkWindowToImageFilter>::New();
+ w2i->SetInput(widget->GetRenderWindow());
+ w2i->Update();
+ vtkImageData *image = w2i->GetOutput();
+
const char *ext = fileName.toStdString().c_str() + strlen(fileName.toStdString().c_str()) - 4;
if (!strcmp(ext, ".bmp")) {
vtkBMPWriter *bmp = vtkBMPWriter::New();
jpg->SetFileName(fileName.toStdString().c_str());
jpg->Write();
jpg->Delete();
+#ifdef VTK_USE_MPEG2_ENCODER
+ } else if (!strcmp(ext, ".mpg")) {
+ vtkMPEG2Writer *mpg = vtkMPEG2Writer::New();
+ mpg->SetInput(image);
+ mpg->SetFileName(fileName.toStdString().c_str());
+ mpg->Start();
+
+ vvImage * vvImg = mSlicerManagers[smIndex]->GetImage();
+ int nSlice = vvImg->GetVTKImages().size();
+ for(int i=0; i<nSlice; i++)
+ {
+ mSlicerManagers[smIndex]->SetNextTSlice(0);
+ vtkSmartPointer<vtkWindowToImageFilter> w2i = vtkSmartPointer<vtkWindowToImageFilter>::New();
+ w2i->SetInput(widget->GetRenderWindow());
+ w2i->Update();
+ mpg->SetInput(w2i->GetOutput());
+ mpg->Write();
+ }
+ mpg->End();
+ mpg->Delete();
+#endif
} else {
QMessageBox::information(this,tr("Problem saving screenshot !"),tr("Cannot save image.\nPlease set a file extension !!!"));
}
}
-
}
//------------------------------------------------------------------------------
for(unsigned int l=0; l<mSlicerManagers.size(); l++) {
vvSlicerManager * v = mSlicerManagers[l];
if (v->GetBaseFileName() ==
- vtksys::SystemTools::GetFilenameName(vtksys::SystemTools::GetFilenameWithoutLastExtension(filename))) {
+ vtksys::SystemTools::GetFilenameName(vtksys::SystemTools::GetFilenameWithoutLastExtension(filename))) {
number = std::max(number, v->GetBaseFileNameNumber()+1);
}
}
//create an item in the tree with good settings
QTreeWidgetItem *item = new QTreeWidgetItem();
item->setData(0,Qt::UserRole,slicer_manager->GetFileName().c_str());//files[i].c_str());
- item->setData(COLUMN_IMAGE_NAME,Qt::DisplayRole,filename.c_str());
+ item->setData(COLUMN_IMAGE_NAME,Qt::DisplayRole,slicer_manager->GetFileName().c_str());//filename.c_str());
qApp->processEvents();
for (int j = 1; j <= 4; j++) item->setData(j,Qt::CheckStateRole,1);
item->setData(COLUMN_IMAGE_NAME,Qt::UserRole,id.toStdString().c_str());
mSlicerManagers.back()->SetId(id.toStdString());
- linkPanel->addImage(filename, id.toStdString());
+ linkPanel->addImage(slicer_manager->GetFileName().c_str()// filename
+ , id.toStdString());
connect(mSlicerManagers.back(), SIGNAL(currentImageChanged(std::string)),
this, SLOT(CurrentImageChanged(std::string)));
+ connect(mSlicerManagers.back(), SIGNAL(currentPickedImageChanged(std::string)),
+ this, SLOT(CurrentPickedImageChanged(std::string)));
connect(mSlicerManagers.back(), SIGNAL(UpdatePosition(int, double, double, double, double, double, double, double)),
this, SLOT(MousePositionChanged(int,double, double, double, double, double, double, double)));
connect(mSlicerManagers.back(), SIGNAL(UpdateVector(int, double, double, double, double)),
this,SLOT(UpdateSliceRange(int,int,int,int,int)));
connect(mSlicerManagers.back(), SIGNAL(UpdateLinkManager(std::string,int,double,double,double,int)),
this,SLOT(UpdateLinkManager(std::string,int,double,double,double,int)));
- connect(mSlicerManagers.back(), SIGNAL(UpdateLinkedNavigation(std::string,vvSlicerManager*)),
- this,SLOT(UpdateLinkedNavigation(std::string,vvSlicerManager*)));
+ connect(mSlicerManagers.back(), SIGNAL(UpdateLinkedNavigation(std::string,vvSlicerManager*,vvSlicer*)),
+ this,SLOT(UpdateLinkedNavigation(std::string,vvSlicerManager*,vvSlicer*)));
connect(mSlicerManagers.back(), SIGNAL(ChangeImageWithIndexOffset(vvSlicerManager*,int,int)),
this,SLOT(ChangeImageWithIndexOffset(vvSlicerManager*,int,int)));
connect(mSlicerManagers.back(), SIGNAL(LandmarkAdded()),landmarksPanel,SLOT(AddPoint()));
ShowLastImage();
InitDisplay();
qApp->processEvents();
-
+
// End
+ ImageInfoChanged();
return slicer_manager;
}
//------------------------------------------------------------------------------