#include "vvStructSelector.h"
#include "vvMeshReader.h"
#include "vvConstants.h"
-
-#ifdef CLITK_VV_USE_BDCM
-#include <bdcmDicomFilesSelectorDialog.h>
-#endif
+#include "clitkConfiguration.h"
// ITK include
#include "itkImage.h"
#include "vtkPNMWriter.h"
#include "vtkPNGWriter.h"
#include "vtkJPEGWriter.h"
+#include "vtkMatrix4x4.h"
+#include "vtkTransform.h"
// Standard includes
#include <iostream>
+#include <sstream>
+#include <iomanip>
#define COLUMN_TREE 0
#define COLUMN_UL_VIEW 1
#define COLUMN_RELOAD_IMAGE 6
#define COLUMN_IMAGE_NAME 7
-#define EXTENSIONS "Images ( *.bmp *.png *.jpeg *.jpg *.tif *.mhd *.hdr *.vox *.his *.xdr)"
+#define EXTENSIONS "Images ( *.bmp *.png *.jpeg *.jpg *.tif *.mhd *.hdr *.vox *.his *.xdr *.SCAN )"
/*Data Tree values
0,Qt::UserRole full filename
mInputPathName = "";
mMenuTools = menuTools;
+ // mMenuSegmentation = menuSegmentation;
mContextMenu = &contextMenu;
mMenuExperimentalTools = menuExperimental;
mMainWidget = this;
mCurrentTime = -1;
+ mCurrentSelectedImageId = "";
+ mCurrentPickedImageId = "";
+ mCurrentPickedImageIndex = 0;
//Init the contextMenu
this->setContextMenuPolicy(Qt::CustomContextMenu);
contextMenu.addSeparator();
- // QAction* actionCrop_image = contextMenu.addAction(QIcon(QString::fromUtf8(":/common/icons/crop.png")),
- // tr("Crop Current Image"));
- // connect(actionCrop_image,SIGNAL(triggered()),this,SLOT(CropImage()));
- // contextActions.push_back(actionCrop_image);
-
- QAction* actionSplit_image = contextMenu.addAction(QIcon(QString::fromUtf8(":/common/icons/cut.png")),
- tr("Split Current Image"));
- connect(actionSplit_image,SIGNAL(triggered()),this,SLOT(SplitImage()));
- contextActions.push_back(actionSplit_image);
-
- contextMenu.addSeparator();
-
contextMenu.addAction(actionAdd_VF_to_current_Image);
contextActions.push_back(actionAdd_VF_to_current_Image);
connect(actionAdd_Overlay_to_current_Image,SIGNAL(triggered()), this,SLOT(SelectOverlayImage()));
contextMenu.addAction(actionAdd_fusion_image);
- connect(actionAdd_fusion_image,SIGNAL(triggered()),this,SLOT(AddFusionImage()));
+ connect(actionAdd_fusion_image,SIGNAL(triggered()),this,SLOT(SelectFusionImage()));
contextActions.push_back(actionAdd_fusion_image);
// TRIAL DS
connect(actionOpen_Dicom_Struct,SIGNAL(triggered()),this,SLOT(OpenDCStructContour()));
connect(actionOpen_VTK_contour,SIGNAL(triggered()),this,SLOT(OpenVTKContour()));
connect(actionOpen_Multiple_Images_As_One,SIGNAL(triggered()),this,SLOT(MergeImages()));
+ connect(actionSlice_Image_As_Multiple_Images,SIGNAL(triggered()),this,SLOT(SliceImages()));
connect(actionOpen_Image_With_Time,SIGNAL(triggered()),this,SLOT(OpenImageWithTime()));
connect(actionMerge_images_as_n_dim_t, SIGNAL(triggered()), this, SLOT(MergeImagesWithTime()));
connect(actionSave_As,SIGNAL(triggered()),this,SLOT(SaveAs()));
connect(colorMapComboBox,SIGNAL(currentIndexChanged(int)),this,SLOT(UpdateColorMap()));
connect(presetComboBox,SIGNAL(currentIndexChanged(int)),this,SLOT(UpdateWindowLevel()));
connect(inverseButton,SIGNAL(clicked()),this,SLOT(SwitchWindowLevel()));
+ connect(applyWindowLevelToAllButton,SIGNAL(clicked()),this,SLOT(ApplyWindowLevelToAllImages()));
connect(this,SIGNAL(customContextMenuRequested(QPoint)),this,SLOT(ShowContextMenu(QPoint)));
connect(linkPanel,SIGNAL(addLink(QString,QString)),this,SLOT(AddLink(QString,QString)));
connect(linkPanel,SIGNAL(removeLink(QString,QString)),this,SLOT(RemoveLink(QString,QString)));
- connect(overlayPanel,SIGNAL(VFPropertyUpdated(int,int,int,int)),this,SLOT(SetVFProperty(int,int,int,int)));
+ connect(overlayPanel,SIGNAL(VFPropertyUpdated(int,int,int,int,double,double,double)),this,SLOT(SetVFProperty(int,int,int,int,double,double,double)));
connect(overlayPanel,SIGNAL(OverlayPropertyUpdated(int)),this,SLOT(SetOverlayProperty(int)));
connect(overlayPanel,SIGNAL(FusionPropertyUpdated(int,int,double,double)),
this,SLOT(SetFusionProperty(int,int,double,double)));
QMenu * rmenu = new QMenu("Recently opened files...");
rmenu->setIcon(QIcon(QString::fromUtf8(":/common/icons/open.png")));
menuFile->insertMenu(actionOpen_Image_With_Time,rmenu);
+ menuFile->insertSeparator(actionOpen_Image_With_Time);
for (std::list<std::string>::iterator i = recent_files.begin(); i!=recent_files.end(); i++) {
QAction* current=new QAction(QIcon(QString::fromUtf8(":/common/icons/open.png")),
(*i).c_str(),this);
if (!CLITK_EXPERIMENTAL)
menuExperimental->menuAction()->setVisible(false);
+
+
+ QTimer * timerMemory = new QTimer(this);
+ //timerMemory->setInterval(5);
+ connect(timerMemory, SIGNAL(timeout()), this, SLOT(UpdateMemoryUsage()));
+ timerMemory->start(2000);
+
+}
+//------------------------------------------------------------------------------
+
+
+//------------------------------------------------------------------------------
+void vvMainWindow::UpdateMemoryUsage()
+{
+ // clitk::PrintMemory(true);
+ if (clitk::GetMemoryUsageInMb() == 0) infoPanel->setMemoryInMb("NA");
+ else infoPanel->setMemoryInMb(QString::number(clitk::GetMemoryUsageInMb())+" MiB");
}
//------------------------------------------------------------------------------
void vvMainWindow::OpenDCStructContour()
{
if (mSlicerManagers.size() > 0) {
- QString Extensions = "Dicom Files ( *.dcm; RS*)";
+ QString Extensions = "Dicom Files ( *.dcm RS*)";
Extensions += ";;All Files (*)";
QString file = QFileDialog::getOpenFileName(this,tr("Merge Images"),mInputPathName,Extensions);
if (file.isNull())
}
//------------------------------------------------------------------------------
+//------------------------------------------------------------------------------
+QTabWidget * vvMainWindow::GetTab()
+{
+ return tabWidget;
+}
+//------------------------------------------------------------------------------
+
//------------------------------------------------------------------------------
void vvMainWindow::MergeImages()
}
//------------------------------------------------------------------------------
+//------------------------------------------------------------------------------
+void vvMainWindow::SliceImages()
+{
+ QString Extensions = EXTENSIONS;
+ Extensions += ";;All Files (*)";
+
+ QStringList files = QFileDialog::getOpenFileNames(this,tr("Slice Images"),mInputPathName,Extensions);
+ if (files.isEmpty())
+ return;
+ mInputPathName = itksys::SystemTools::GetFilenamePath(files[0].toStdString()).c_str();
+ std::vector<std::string> vector;
+ for (int i = 0; i < files.size(); i++)
+ vector.push_back(files[i].toStdString());
+ LoadImages(vector, SLICED);
+}
+//------------------------------------------------------------------------------
//------------------------------------------------------------------------------
void vvMainWindow::MergeImagesWithTime()
{
std::vector<std::string> files;
-#ifdef CLITK_VV_USE_BDCM
- bool r = bdcm::OpenDicomFilesSelectorDialog(files,
- "DicomFilesSelectorDialog test",
- 0,0,800,800,1);
-
- if (r) {
- std::cout << "$$$$ main : user clicked 'OK' $$$$"<<std::endl;
- std::cout << "$$$$ selected files : "<<std::endl;
- std::vector<std::string>::iterator i;
- for (i=files.begin(); i!=files.end(); ++i) {
- std::cout << *i << std::endl;
- }
- std::cout << "$$$$ "<<std::endl;
-
- LoadImages(files,DICOM);
- } else {
- std::cout << "$$$$ main : user clicked 'CANCEL' $$$$"<<std::endl;
- }
-#else
std::cout << "dicomSeriesSelector " << std::endl;
if (dicomSeriesSelector->exec() == QDialog::Accepted) {
files = *(dicomSeriesSelector->GetFilenames());
LoadImages(files,DICOM);
}
-#endif
-
}
//------------------------------------------------------------------------------
else
fileSize = 1;
+ // For SLICED, we need the number of slices (ndim and #slices)
+ std::vector<unsigned int> nSlices;
+ nSlices.resize(files.size());
+ std::fill(nSlices.begin(), nSlices.end(), 1);
+ if (filetype == SLICED) {
+ for (int i = 0; i < fileSize; i++) {
+ itk::ImageIOBase::Pointer header = clitk::readImageHeader(files[i]);
+ QApplication::setOverrideCursor(QCursor(Qt::WaitCursor));
+ if (!header) {
+ nSlices[i] = 0;
+ QString error = "Cannot open file \n";
+ error += files[i].c_str();
+ QMessageBox::information(this,tr("Reading problem"),error);
+ return;
+ }
+ if (header->GetNumberOfDimensions() < 3) {
+ nSlices[i] = 0;
+ QString error = "Dimension problem. Cannot slice \n";
+ error += files[i].c_str();
+ QMessageBox::information(this,tr("Reading problem"),error);
+ return;
+ }
+ nSlices[i] = header->GetDimensions( header->GetNumberOfDimensions()-1 );
+ }
+ }
+
//Only add to the list of recently opened files when a single file is opened,
//to avoid polluting the list of recently opened files
if (files.size() == 1) {
//open images as 1 or multiples
for (int i = 0; i < fileSize; i++) {
- progress.Update("Opening " + files[i]);
+ progress.SetText("Opening " + files[i]);
progress.SetProgress(i,fileSize);
qApp->processEvents();
- //read the image and put it in mSlicerManagers
- vvSlicerManager* imageManager = new vvSlicerManager(4);
- qApp->processEvents();
+ for (unsigned int j = 0; j < nSlices[i]; j++) {
+ //read the image and put it in mSlicerManagers
+ vvSlicerManager* imageManager = new vvSlicerManager(4);
+ qApp->processEvents();
+
+ bool SetImageSucceed=false;
+
+ // Change filename if an image with the same already exist
+ int number = GetImageDuplicateFilenameNumber(files[i] + std::string("_slice"));
- bool SetImageSucceed=false;
-
- // Change filename if an image with the same already exist
- // DD(files[i]);
- int number=0;
- for(unsigned int l=0; l<mSlicerManagers.size(); l++) {
- vvSlicerManager * v = mSlicerManagers[l];
- // DD(v->GetBaseFileName());
- // DD(v->GetFileName());
- if (v->GetBaseFileName() ==
- vtksys::SystemTools::GetFilenameName(vtksys::SystemTools::GetFilenameWithoutLastExtension(files[i]))) {
- number = std::max(number, v->GetBaseFileNameNumber()+1);
+ if (filetype == IMAGE || filetype == IMAGEWITHTIME || filetype == SLICED)
+ SetImageSucceed = imageManager->SetImage(files[i],filetype, number, j);
+ else {
+ SetImageSucceed = imageManager->SetImages(files,filetype, number);
}
- }
+ if (!SetImageSucceed) {
+ QApplication::restoreOverrideCursor();
+ QString error = "Cannot open file \n";
+ error += imageManager->GetLastError().c_str();
+ QMessageBox::information(this,tr("Reading problem"),error);
+ delete imageManager;
+ } else {
+ mSlicerManagers.push_back(imageManager);
+ //create an item in the tree with good settings
+ QTreeWidgetItem *item = new QTreeWidgetItem();
+ item->setData(0,Qt::UserRole,files[i].c_str());
+ QFileInfo fileinfo(imageManager->GetFileName().c_str()); //Do not show the path
+ item->setData(COLUMN_IMAGE_NAME,Qt::DisplayRole,fileinfo.fileName());
+ item->setToolTip(COLUMN_IMAGE_NAME,fileinfo.absoluteFilePath());
+ qApp->processEvents();
- if (filetype == IMAGE || filetype == IMAGEWITHTIME)
- SetImageSucceed = imageManager->SetImage(files[i],filetype, number);
- else {
- SetImageSucceed = imageManager->SetImages(files,filetype, number);
- }
- if (SetImageSucceed == false) {
- QApplication::restoreOverrideCursor();
- QString error = "Cannot open file \n";
- error += imageManager->GetLastError().c_str();
- QMessageBox::information(this,tr("Reading problem"),error);
- delete imageManager;
- } else {
- mSlicerManagers.push_back(imageManager);
+ //Create the buttons for reload and close
+ qApp->processEvents();
+ QTreePushButton* cButton = new QTreePushButton;
+ cButton->setItem(item);
+ cButton->setColumn(COLUMN_CLOSE_IMAGE);
+ cButton->setToolTip(tr("close image"));
+ cButton->setIcon(QIcon(QString::fromUtf8(":/common/icons/exit.png")));
+ connect(cButton,SIGNAL(clickedInto(QTreeWidgetItem*, int)),
+ this,SLOT(CloseImage(QTreeWidgetItem*, int)));
- //create an item in the tree with good settings
- QTreeWidgetItem *item = new QTreeWidgetItem();
- item->setData(0,Qt::UserRole,files[i].c_str());
- QFileInfo fileinfo(imageManager->GetFileName().c_str()); //Do not show the path
- item->setData(COLUMN_IMAGE_NAME,Qt::DisplayRole,fileinfo.fileName());
- qApp->processEvents();
+ QTreePushButton* rButton = new QTreePushButton;
+ rButton->setItem(item);
+ rButton->setColumn(COLUMN_RELOAD_IMAGE);
+ rButton->setToolTip(tr("reload image"));
+ rButton->setIcon(QIcon(QString::fromUtf8(":/common/icons/rotateright.png")));
+ connect(rButton,SIGNAL(clickedInto(QTreeWidgetItem*, int)),
+ this,SLOT(ReloadImage(QTreeWidgetItem*, int)));
- //Create the buttons for reload and close
- qApp->processEvents();
- QTreePushButton* cButton = new QTreePushButton;
- cButton->setItem(item);
- cButton->setColumn(COLUMN_CLOSE_IMAGE);
- cButton->setToolTip(tr("close image"));
- cButton->setIcon(QIcon(QString::fromUtf8(":/common/icons/exit.png")));
- connect(cButton,SIGNAL(clickedInto(QTreeWidgetItem*, int)),
- this,SLOT(CloseImage(QTreeWidgetItem*, int)));
+ DataTree->addTopLevelItem(item);
+ DataTree->setItemWidget(item, COLUMN_CLOSE_IMAGE, cButton);
+ DataTree->setItemWidget(item, COLUMN_RELOAD_IMAGE, rButton);
- QTreePushButton* rButton = new QTreePushButton;
- rButton->setItem(item);
- rButton->setColumn(COLUMN_RELOAD_IMAGE);
- rButton->setToolTip(tr("reload image"));
- rButton->setIcon(QIcon(QString::fromUtf8(":/common/icons/rotateright.png")));
- connect(rButton,SIGNAL(clickedInto(QTreeWidgetItem*, int)),
- this,SLOT(ReloadImage(QTreeWidgetItem*, int)));
+ //set the id of the image
+ QString id = files[i].c_str() + QString::number(mSlicerManagers.size()-1);
+ item->setData(COLUMN_IMAGE_NAME,Qt::UserRole,id.toStdString().c_str());
+ mSlicerManagers.back()->SetId(id.toStdString());
- DataTree->addTopLevelItem(item);
- DataTree->setItemWidget(item, COLUMN_CLOSE_IMAGE, cButton);
- DataTree->setItemWidget(item, COLUMN_RELOAD_IMAGE, rButton);
+ linkPanel->addImage(imageManager->GetFileName(), id.toStdString());
- //set the id of the image
- QString id = files[i].c_str() + QString::number(mSlicerManagers.size()-1);
- item->setData(COLUMN_IMAGE_NAME,Qt::UserRole,id.toStdString().c_str());
- mSlicerManagers.back()->SetId(id.toStdString());
-
- linkPanel->addImage(imageManager->GetFileName(), id.toStdString());
-
- connect(mSlicerManagers.back(), SIGNAL(currentImageChanged(std::string)),
- this,SLOT(CurrentImageChanged(std::string)));
- connect(mSlicerManagers.back(), SIGNAL(UpdatePosition(int, double, double, double, double, double, double, double)),
- this,SLOT(MousePositionChanged(int,double, double, double, double, double, double, double)));
- connect(mSlicerManagers.back(), SIGNAL(UpdateVector(int, double, double, double, double)),
- this, SLOT(VectorChanged(int,double,double,double, double)));
- connect(mSlicerManagers.back(), SIGNAL(UpdateOverlay(int, double, double)),
- this, SLOT(OverlayChanged(int,double,double)));
- connect(mSlicerManagers.back(), SIGNAL(UpdateFusion(int, double)),
- this, SLOT(FusionChanged(int,double)));
- connect(mSlicerManagers.back(), SIGNAL(UpdateWindows(int, int, int)),
- this,SLOT(WindowsChanged(int, int, int)));
- connect(mSlicerManagers.back(), SIGNAL(WindowLevelChanged(double, double,int, int)),
- this,SLOT(WindowLevelChanged(double, double, int, int)));
- connect(mSlicerManagers.back(), SIGNAL(UpdateSlice(int,int)),
- this,SLOT(UpdateSlice(int,int)));
- connect(mSlicerManagers.back(), SIGNAL(UpdateTSlice(int, int)),
- this,SLOT(UpdateTSlice(int, int)));
- connect(mSlicerManagers.back(), SIGNAL(UpdateSliceRange(int,int,int,int,int)),
- this,SLOT(UpdateSliceRange(int,int,int,int,int)));
- connect(mSlicerManagers.back(), SIGNAL(UpdateLinkManager(std::string,int,double,double,double,int)),
- this,SLOT(UpdateLinkManager(std::string,int,double,double,double,int)));
- connect(mSlicerManagers.back(), SIGNAL(ChangeImageWithIndexOffset(vvSlicerManager*,int,int)),
- this,SLOT(ChangeImageWithIndexOffset(vvSlicerManager*,int,int)));
- connect(mSlicerManagers.back(),SIGNAL(LandmarkAdded()),landmarksPanel,SLOT(AddPoint()));
- InitSlicers();
- numberofsuccesulreads++;
+ connect(mSlicerManagers.back(), SIGNAL(currentImageChanged(std::string)),
+ this,SLOT(CurrentImageChanged(std::string)));
+ connect(mSlicerManagers.back(), SIGNAL(currentPickedImageChanged(std::string)),
+ this, SLOT(CurrentPickedImageChanged(std::string)));
+ connect(mSlicerManagers.back(), SIGNAL(UpdatePosition(int, double, double, double, double, double, double, double)),
+ this,SLOT(MousePositionChanged(int,double, double, double, double, double, double, double)));
+ connect(mSlicerManagers.back(), SIGNAL(UpdateVector(int, double, double, double, double)),
+ this, SLOT(VectorChanged(int,double,double,double, double)));
+ connect(mSlicerManagers.back(), SIGNAL(UpdateOverlay(int, double, double)),
+ this, SLOT(OverlayChanged(int,double,double)));
+ connect(mSlicerManagers.back(), SIGNAL(UpdateFusion(int, double)),
+ this, SLOT(FusionChanged(int,double)));
+ connect(mSlicerManagers.back(), SIGNAL(UpdateWindows(int, int, int)),
+ this,SLOT(WindowsChanged(int, int, int)));
+ connect(mSlicerManagers.back(), SIGNAL(WindowLevelChanged(double, double,int, int)),
+ this,SLOT(WindowLevelChanged(double, double, int, int)));
+ connect(mSlicerManagers.back(), SIGNAL(UpdateSlice(int,int)),
+ this,SLOT(UpdateSlice(int,int)));
+ connect(mSlicerManagers.back(), SIGNAL(UpdateTSlice(int, int)),
+ this,SLOT(UpdateTSlice(int, int)));
+ connect(mSlicerManagers.back(), SIGNAL(UpdateSliceRange(int,int,int,int,int)),
+ this,SLOT(UpdateSliceRange(int,int,int,int,int)));
+ connect(mSlicerManagers.back(), SIGNAL(UpdateLinkManager(std::string,int,double,double,double,int)),
+ this,SLOT(UpdateLinkManager(std::string,int,double,double,double,int)));
+ connect(mSlicerManagers.back(), SIGNAL(UpdateLinkedNavigation(std::string,vvSlicerManager*)),
+ this,SLOT(UpdateLinkedNavigation(std::string,vvSlicerManager*)));
+ connect(mSlicerManagers.back(), SIGNAL(ChangeImageWithIndexOffset(vvSlicerManager*,int,int)),
+ this,SLOT(ChangeImageWithIndexOffset(vvSlicerManager*,int,int)));
+ connect(mSlicerManagers.back(),SIGNAL(LandmarkAdded()),landmarksPanel,SLOT(AddPoint()));
+ InitSlicers();
+ numberofsuccesulreads++;
+ }
}
}
if (numberofsuccesulreads) {
UpdateTree();
InitDisplay();
ShowLastImage();
- }
- QApplication::restoreOverrideCursor();
- // Try to guess default WindowLevel
- double range[2];
- mSlicerManagers.back()->GetImage()->GetFirstVTKImageData()->GetScalarRange(range);
- // DD(range[0]);
- // DD(range[1]);
- if ((range[0] == 0) && (range[1] == 1)) {
- presetComboBox->setCurrentIndex(5);// binary
- } else {
- // TODO
+ // Try to guess default WindowLevel
+ double range[2];
+ mSlicerManagers.back()->GetImage()->GetFirstVTKImageData()->GetScalarRange(range);
+ if ((range[0] == 0) && (range[1] == 1)) {
+ presetComboBox->setCurrentIndex(5);// binary
+ } else {
+ // TODO
+ }
}
+ QApplication::restoreOverrideCursor();
}
//------------------------------------------------------------------------------
//------------------------------------------------------------------------------
void vvMainWindow::CurrentImageChanged(std::string id)
{
+ if (id == mCurrentSelectedImageId) return; // Do nothing
int selected = 0;
for (int i = 0; i < DataTree->topLevelItemCount(); i++) {
if (DataTree->topLevelItem(i)->data(COLUMN_IMAGE_NAME,Qt::UserRole).toString().toStdString() == id) {
}
DataTree->topLevelItem(selected)->setSelected(1);
+ mCurrentSelectedImageId = id;
+ emit SelectedImageHasChanged(mSlicerManagers[selected]);
+}
+//------------------------------------------------------------------------------
+
+//------------------------------------------------------------------------------
+void vvMainWindow::CurrentPickedImageChanged(std::string id)
+{
+ if (id == mCurrentPickedImageId) return; // Do nothing
+ int selected = 0;
+ for (int i = 0; i < DataTree->topLevelItemCount(); i++) {
+ if (DataTree->topLevelItem(i)->data(COLUMN_IMAGE_NAME,Qt::UserRole).toString().toStdString() == id) {
+ selected = i;
+ } else {
+ DataTree->topLevelItem(i)->setSelected(0);
+ }
+ for (int child = 0; child < DataTree->topLevelItem(i)->childCount(); child++)
+ DataTree->topLevelItem(i)->child(child)->setSelected(0);
+
+ }
+ DataTree->topLevelItem(selected)->setSelected(1);
+ mCurrentPickedImageId = id;
+ mCurrentPickedImageIndex = selected;
}
//------------------------------------------------------------------------------
//------------------------------------------------------------------------------
void vvMainWindow::ImageInfoChanged()
{
- contextActions[7]->setEnabled(1);
contextActions[6]->setEnabled(1);
+ contextActions[5]->setEnabled(1);
actionSave_As->setEnabled(1);
actionAdd_VF_to_current_Image->setEnabled(1);
actionAdd_fusion_image->setEnabled(1);
std::vector<double> inputSpacing;
std::vector<int> inputSize;
std::vector<double> sizeMM;
+ vtkSmartPointer<vtkMatrix4x4> transformation;
int dimension=0;
QString pixelType;
QString inputSizeInBytes;
//read image header
int NPixel = 1;
+ vvImage::Pointer imageSelected;
if (DataTree->topLevelItem(index) == DataTree->selectedItems()[0]) {
- vvImage::Pointer imageSelected = mSlicerManagers[index]->GetSlicer(0)->GetImage();
+ imageSelected = mSlicerManagers[index]->GetSlicer(0)->GetImage();
dimension = imageSelected->GetNumberOfDimensions();
origin.resize(dimension);
inputSpacing.resize(dimension);
inputSize.resize(dimension);
sizeMM.resize(dimension);
- pixelType = mSlicerManagers[index]->GetImage()->GetScalarTypeAsString().c_str();
+ pixelType = mSlicerManagers[index]->GetImage()->GetScalarTypeAsITKString().c_str();
for (int i = 0; i < dimension; i++) {
origin[i] = imageSelected->GetOrigin()[i];
inputSpacing[i] = imageSelected->GetSpacing()[i];
}
inputSizeInBytes = GetSizeInBytes(imageSelected->GetActualMemorySize()*1000);
} else if (DataTree->selectedItems()[0]->data(1,Qt::UserRole).toString() == "vector") {
- vvImage::Pointer imageSelected = mSlicerManagers[index]->GetSlicer(0)->GetVF();
+ imageSelected = mSlicerManagers[index]->GetSlicer(0)->GetVF();
dimension = imageSelected->GetNumberOfDimensions();
origin.resize(dimension);
inputSpacing.resize(dimension);
inputSize.resize(dimension);
sizeMM.resize(dimension);
- pixelType = mSlicerManagers[index]->GetVF()->GetScalarTypeAsString().c_str();
+ pixelType = mSlicerManagers[index]->GetVF()->GetScalarTypeAsITKString().c_str();
for (int i = 0; i < dimension; i++) {
origin[i] = imageSelected->GetOrigin()[i];
inputSpacing[i] = imageSelected->GetSpacing()[i];
}
inputSizeInBytes = GetSizeInBytes(imageSelected->GetActualMemorySize()*1000);
} else if (DataTree->selectedItems()[0]->data(1,Qt::UserRole).toString() == "overlay") {
- vvImage::Pointer imageSelected = mSlicerManagers[index]->GetSlicer(0)->GetOverlay();
+ imageSelected = mSlicerManagers[index]->GetSlicer(0)->GetOverlay();
dimension = imageSelected->GetNumberOfDimensions();
origin.resize(dimension);
inputSpacing.resize(dimension);
inputSize.resize(dimension);
sizeMM.resize(dimension);
- pixelType = mSlicerManagers[index]->GetImage()->GetScalarTypeAsString().c_str();
+ pixelType = mSlicerManagers[index]->GetImage()->GetScalarTypeAsITKString().c_str();
for (int i = 0; i < dimension; i++) {
origin[i] = imageSelected->GetOrigin()[i];
inputSpacing[i] = imageSelected->GetSpacing()[i];
}
inputSizeInBytes = GetSizeInBytes(imageSelected->GetActualMemorySize()*1000);
} else if (DataTree->selectedItems()[0]->data(1,Qt::UserRole).toString() == "fusion") {
- vvImage::Pointer imageSelected = mSlicerManagers[index]->GetSlicer(0)->GetFusion();
+ imageSelected = mSlicerManagers[index]->GetSlicer(0)->GetFusion();
dimension = imageSelected->GetNumberOfDimensions();
origin.resize(dimension);
inputSpacing.resize(dimension);
inputSize.resize(dimension);
sizeMM.resize(dimension);
- pixelType = mSlicerManagers[index]->GetImage()->GetScalarTypeAsString().c_str();
+ pixelType = mSlicerManagers[index]->GetImage()->GetScalarTypeAsITKString().c_str();
for (int i = 0; i < dimension; i++) {
origin[i] = imageSelected->GetOrigin()[i];
inputSpacing[i] = imageSelected->GetSpacing()[i];
infoPanel->setOrigin(GetVectorDoubleAsString(origin));
infoPanel->setSpacing(GetVectorDoubleAsString(inputSpacing));
infoPanel->setNPixel(QString::number(NPixel)+" ("+inputSizeInBytes+")");
+ transformation = imageSelected->GetTransform()->GetMatrix();
+ infoPanel->setTransformation(Get4x4MatrixDoubleAsString(transformation));
landmarksPanel->SetCurrentLandmarks(mSlicerManagers[index]->GetLandmarks(),
mSlicerManagers[index]->GetSlicer(0)->GetImage()->GetVTKImages().size());
}
windowSpinBox->setValue(mSlicerManagers[index]->GetColorWindow());
levelSpinBox->setValue(mSlicerManagers[index]->GetColorLevel());
- // DD(mSlicerManagers[index]->GetColorMap());
- // DD(mSlicerManagers[index]->GetPreset());
presetComboBox->setCurrentIndex(mSlicerManagers[index]->GetPreset());
colorMapComboBox->setCurrentIndex(mSlicerManagers[index]->GetColorMap());
}
//------------------------------------------------------------------------------
+//------------------------------------------------------------------------------
+QString vvMainWindow::Get4x4MatrixDoubleAsString(vtkSmartPointer<vtkMatrix4x4> matrix)
+{
+ std::ostringstream strmatrix;
+
+ for (unsigned int i = 0; i < 4; i++) {
+ for (unsigned int j = 0; j < 4; j++) {
+ strmatrix.flags(ios::showpos);
+ strmatrix.width(10);
+ strmatrix.precision(3);
+ strmatrix.setf(ios::fixed,ios::floatfield);
+ strmatrix.fill(' ');
+ strmatrix << std::left << matrix->GetElement(i, j);
+ //strmatrix.width(10);
+ strmatrix << " ";
+ }
+ strmatrix << std::endl;
+ }
+ QString result = strmatrix.str().c_str();
+ return result;
+}
+//------------------------------------------------------------------------------
+
//------------------------------------------------------------------------------
QString vvMainWindow::GetVectorDoubleAsString(std::vector<double> vectorDouble)
{
InitDisplay();
}
}
+ ImageInfoChanged();
}
//------------------------------------------------------------------------------
}
//------------------------------------------------------------------------------
-// void vvMainWindow::CropImage()
-// {
-// int index = GetSlicerIndexFromItem(DataTree->selectedItems()[0]);
-// vvCropDialog crop(mSlicerManagers,index);
-// if(crop.exec())
-// AddImage(crop.GetOutput(),"cropped.mhd");
-// }
-
-//------------------------------------------------------------------------------
-void vvMainWindow::SplitImage()
-{
- int index = GetSlicerIndexFromItem(DataTree->selectedItems()[0]);
- int dim = mSlicerManagers[index]->GetDimension();
- QString warning = "Do you really want to split the ";
- warning += QString::number(dim) + "D image ";
- warning += DataTree->selectedItems()[0]->data(COLUMN_IMAGE_NAME,Qt::DisplayRole).toString() + " into ";
- warning += QString::number(mSlicerManagers[index]->GetSlicer(0)->GetImage()->GetSize()[dim-1]) + " ";
- warning += QString::number(dim-1) + "D images.";
- QMessageBox msgBox(QMessageBox::Warning, tr("Split Image"),
- warning, 0, this);
- msgBox.addButton(tr("Split"), QMessageBox::AcceptRole);
- msgBox.addButton(tr("Cancel"), QMessageBox::RejectRole);
- if (msgBox.exec() == QMessageBox::AcceptRole) {
- QApplication::setOverrideCursor(QCursor(Qt::WaitCursor));
- if (dim > 2) {
- std::string filename = DataTree->selectedItems()[0]->data(0,Qt::UserRole).toString().toStdString();
- int numberOfSlice = mSlicerManagers[index]->GetSlicer(0)->GetImage()->GetSize()[dim-1];
- std::string path = itksys::SystemTools::GetFilenamePath(
- filename);
- path += "/";
- path += DataTree->selectedItems()[0]->data(COLUMN_IMAGE_NAME,Qt::DisplayRole).toString().toStdString();
- path += "%03d";
- path += itksys::SystemTools::GetFilenameLastExtension(
- filename).c_str();
-
- typedef itk::NumericSeriesFileNames NameGeneratorType;
- NameGeneratorType::Pointer nameGenerator = NameGeneratorType::New();
- nameGenerator->SetSeriesFormat(path.c_str());
- nameGenerator->SetStartIndex(0);
- nameGenerator->SetEndIndex(numberOfSlice-1);
- nameGenerator->SetIncrementIndex(1);
-
- for (int i = 0; i < numberOfSlice; i++) {
- vvSlicerManager* imageManager = new vvSlicerManager(4);
- imageManager->SetExtractedImage(nameGenerator->GetFileNames()[i],
- mSlicerManagers[index]->GetSlicer(0)->GetImage(), i);
- mSlicerManagers.push_back(imageManager);
-
- //create an item in the tree with good settings
- QTreeWidgetItem *item = new QTreeWidgetItem();
- item->setData(0,Qt::UserRole,nameGenerator->GetFileNames()[i].c_str());
- std::string fileI = itksys::SystemTools::GetFilenameWithoutLastExtension(
- nameGenerator->GetFileNames()[i]).c_str();
- item->setData(COLUMN_IMAGE_NAME,Qt::DisplayRole,fileI.c_str());
- for (int j = 1; j <= 4; j++) {
- for (int i = 0; i < DataTree->topLevelItemCount(); i++) {
- DataTree->topLevelItem(i)->setData(j,Qt::CheckStateRole,0);
- }
- item->setData(j,Qt::CheckStateRole,2);
- }
-
- //Create the buttons for reload and close
- QTreePushButton* cButton = new QTreePushButton;
- cButton->setItem(item);
- cButton->setColumn(COLUMN_CLOSE_IMAGE);
- cButton->setToolTip(tr("close image"));
- cButton->setIcon(QIcon(QString::fromUtf8(":/common/icons/exit.png")));
- connect(cButton,SIGNAL(clickedInto(QTreeWidgetItem*, int)),
- this,SLOT(CloseImage(QTreeWidgetItem*, int)));
-
- QTreePushButton* rButton = new QTreePushButton;
- rButton->setItem(item);
- rButton->setColumn(COLUMN_RELOAD_IMAGE);
- rButton->setToolTip(tr("reload image"));
- rButton->setIcon(QIcon(QString::fromUtf8(":/common/icons/rotateright.png")));
- rButton->setEnabled(false);
- connect(rButton,SIGNAL(clickedInto(QTreeWidgetItem*, int)),
- this,SLOT(ReloadImage(QTreeWidgetItem*, int)));
-
- DataTree->addTopLevelItem(item);
- DataTree->setItemWidget(item, COLUMN_CLOSE_IMAGE, cButton);
- DataTree->setItemWidget(item, COLUMN_RELOAD_IMAGE, rButton);
-
- //set the id of the image
- QString id = nameGenerator->GetFileNames()[i].c_str() + QString::number(mSlicerManagers.size()-1);
- item->setData(COLUMN_IMAGE_NAME,Qt::UserRole,id.toStdString().c_str());
- mSlicerManagers.back()->SetId(id.toStdString());
- linkPanel->addImage(fileI, id.toStdString());
- connect(mSlicerManagers.back(),SIGNAL(currentImageChanged(std::string)),
- this,SLOT(CurrentImageChanged(std::string)));
- connect(mSlicerManagers.back(),SIGNAL(
- UpdatePosition(int, double, double, double, double, double, double, double)),this,
- SLOT(MousePositionChanged(int,double, double, double, double, double, double, double)));
- connect(mSlicerManagers.back(),SIGNAL(UpdateVector(int, double, double, double, double)),
- this, SLOT(VectorChanged(int,double,double,double, double)));
- connect(mSlicerManagers.back(),SIGNAL(UpdateOverlay(int, double, double)),
- this, SLOT(OverlayChanged(int,double,double)));
- connect(mSlicerManagers.back(),SIGNAL(UpdateFusion(int, double)),
- this, SLOT(FusionChanged(int,double)));
- connect(mSlicerManagers.back(),SIGNAL(UpdateWindows(int, int, int)),
- this,SLOT(WindowsChanged(int, int, int)));
- connect(mSlicerManagers.back(),SIGNAL(WindowLevelChanged(double, double,int, int)),
- this,SLOT(WindowLevelChanged(double, double, int, int)));
- connect(mSlicerManagers.back(),SIGNAL(UpdateSlice(int,int)),
- this,SLOT(UpdateSlice(int,int)));
- connect(mSlicerManagers.back(),SIGNAL(UpdateTSlice(int, int)),
- this,SLOT(UpdateTSlice(int, int)));
- connect(mSlicerManagers.back(),SIGNAL(UpdateSliceRange(int,int,int,int,int)),
- this,SLOT(UpdateSliceRange(int,int,int,int,int)));
- connect(mSlicerManagers.back(),SIGNAL(UpdateLinkManager(std::string,int,double,double,double,int)),
- this,SLOT(UpdateLinkManager(std::string,int,double,double,double,int)));
- connect(mSlicerManagers.back(),SIGNAL(LandmarkAdded()),landmarksPanel,SLOT(AddPoint()));
- UpdateTree();
- qApp->processEvents();
- InitSlicers();
- InitDisplay();
- qApp->processEvents();
- }
- QApplication::restoreOverrideCursor();
- } else {
- QApplication::restoreOverrideCursor();
- QString error = "Cannot split file (dimensions must be greater than 2) ";
- QMessageBox::information(this,tr("Splitting problem"),error);
- }
- }
-}
-//------------------------------------------------------------------------------
-
//------------------------------------------------------------------------------
void vvMainWindow::MousePositionChanged(int visibility,double x, double y, double z, double X, double Y, double Z , double value)
{
mSlicerManagers[index]->SetColorLevel(levelSpinBox->value());
mSlicerManagers[index]->SetPreset(presetComboBox->currentIndex());
mSlicerManagers[index]->Render();
+ windowSpinBox->setValue(mSlicerManagers[index]->GetColorWindow());
+ levelSpinBox->setValue(mSlicerManagers[index]->GetColorLevel());
}
}
//------------------------------------------------------------------------------
}
//------------------------------------------------------------------------------
+//------------------------------------------------------------------------------
+void vvMainWindow::ApplyWindowLevelToAllImages()
+{
+ for (unsigned int i = 0; i < mSlicerManagers.size(); i++) {
+ if (mSlicerManagers[i] == NULL)
+ continue;
+ mSlicerManagers[i]->SetColorWindow(windowSpinBox->value());
+ mSlicerManagers[i]->SetColorLevel(levelSpinBox->value());
+ mSlicerManagers[i]->SetPreset(6);
+ mSlicerManagers[i]->Render();
+ }
+}
+//------------------------------------------------------------------------------
+
//------------------------------------------------------------------------------
void vvMainWindow::UpdateLinkManager(std::string id, int slicer, double x, double y, double z, int temps)
{
}
//------------------------------------------------------------------------------
+//------------------------------------------------------------------------------
+void vvMainWindow::UpdateLinkedNavigation(std::string id, vvSlicerManager * sm)
+{
+ for (unsigned int i = 0; i < mSlicerManagers.size(); i++) {
+ if (id == mSlicerManagers[i]->GetId()) {
+ mSlicerManagers[i]->UpdateLinkedNavigation(sm->GetSlicer(0));
+ }
+ }
+}
+//------------------------------------------------------------------------------
+
//------------------------------------------------------------------------------
void vvMainWindow::ShowContextMenu(QPoint point)
{
contextActions[4]->setEnabled(0);
contextActions[5]->setEnabled(0);
contextActions[6]->setEnabled(0);
- contextActions[7]->setEnabled(0);
} else {
int index = GetSlicerIndexFromItem(DataTree->selectedItems()[0]);
contextActions[1]->setEnabled(1);
contextActions[3]->setEnabled(1);
contextActions[5]->setEnabled(1);
contextActions[6]->setEnabled(1);
- contextActions[7]->setEnabled(1);
if (mSlicerManagers[index]->GetDimension() < 3)
contextActions[4]->setEnabled(0);
QTreeWidgetItem *item = new QTreeWidgetItem();
item->setData(0,Qt::UserRole,file.toStdString().c_str());
item->setData(1,Qt::UserRole,tr("overlay"));
- item->setData(COLUMN_IMAGE_NAME,Qt::DisplayRole,filename.c_str());
+ QFileInfo fileinfo(file); //Do not show the path
+ item->setData(COLUMN_IMAGE_NAME,Qt::DisplayRole,fileinfo.fileName());
+ item->setToolTip(COLUMN_IMAGE_NAME,fileinfo.absoluteFilePath());
qApp->processEvents();
for (int j = 1; j <= 4; j++) {
QMessageBox::information(this,tr("Problem reading image !"),error);
}
}
+//------------------------------------------------------------------------------
-void vvMainWindow::AddFusionImage()
+
+//------------------------------------------------------------------------------
+void vvMainWindow::AddROI(int index, QString file)
+{
+ /*
+ // Get slice manager
+
+ // Load image
+
+ vvImageReader * mReader = new vvImageReader;
+ mReader->SetInputFilename(filename.toStdString());
+ mReader->Update(IMAGE);
+ if (mReader->GetLastError().size() != 0) {
+ std::cerr << "Error while reading " << filename.toStdString() << std::endl;
+ QString error = "Cannot open file \n";
+ error += mReader->GetLastError().c_str();
+ QMessageBox::information(this,tr("Reading problem"),error);
+ delete mReader;
+ return;
+ }
+ vvImage::Pointer roi = mReader->GetOutput();
+
+ // Create roi in new tool
+ vvToolStructureSetManager::AddImage(mCurrentSlicerManager, roi);
+ */
+}
+//------------------------------------------------------------------------------
+
+//------------------------------------------------------------------------------
+void vvMainWindow::SelectFusionImage()
{
int index = GetSlicerIndexFromItem(DataTree->selectedItems()[0]);
QString Extensions = EXTENSIONS;
Extensions += ";;All Files (*)";
QString file = QFileDialog::getOpenFileName(this,tr("Load Fusion image"),mInputPathName,Extensions);
- if (!file.isEmpty()) {
- mInputPathName = itksys::SystemTools::GetFilenamePath(file.toStdString()).c_str();
- itk::ImageIOBase::Pointer reader = itk::ImageIOFactory::CreateImageIO(
- file.toStdString().c_str(), itk::ImageIOFactory::ReadMode);
- reader->SetFileName(file.toStdString().c_str());
- reader->ReadImageInformation();
- std::string component = reader->GetComponentTypeAsString(reader->GetComponentType());
- if (reader) {
- QApplication::setOverrideCursor(QCursor(Qt::WaitCursor));
- vvProgressDialog progress("Opening fusion");
- qApp->processEvents();
+ if (!file.isEmpty())
+ AddFusionImage(index,file);
+}
+//------------------------------------------------------------------------------
- std::string filename = itksys::SystemTools::GetFilenameWithoutExtension(file.toStdString()).c_str();
- if (mSlicerManagers[index]->SetFusion(file.toStdString(),
- reader->GetNumberOfDimensions(), component)) {
- //create an item in the tree with good settings
- QTreeWidgetItem *item = new QTreeWidgetItem();
- item->setData(0,Qt::UserRole,file.toStdString().c_str());
- item->setData(1,Qt::UserRole,tr("fusion"));
- item->setData(COLUMN_IMAGE_NAME,Qt::DisplayRole,filename.c_str());
- qApp->processEvents();
+//------------------------------------------------------------------------------
+void vvMainWindow::AddFusionImage(int index, QString file)
+{
+ mInputPathName = itksys::SystemTools::GetFilenamePath(file.toStdString()).c_str();
+ itk::ImageIOBase::Pointer reader = itk::ImageIOFactory::CreateImageIO(
+ file.toStdString().c_str(), itk::ImageIOFactory::ReadMode);
+ reader->SetFileName(file.toStdString().c_str());
+ reader->ReadImageInformation();
+ std::string component = reader->GetComponentTypeAsString(reader->GetComponentType());
+ if (reader) {
+ QApplication::setOverrideCursor(QCursor(Qt::WaitCursor));
+ vvProgressDialog progress("Opening fusion");
+ qApp->processEvents();
- for (int j = 1; j <= 4; j++) {
- item->setData(j,Qt::CheckStateRole,DataTree->topLevelItem(index)->data(j,Qt::CheckStateRole));
- mSlicerManagers[index]->GetSlicer(j-1)->SetActorVisibility("fusion",0,
- DataTree->topLevelItem(index)->data(j,Qt::CheckStateRole).toInt());
- }
+ std::string filename = itksys::SystemTools::GetFilenameWithoutExtension(file.toStdString()).c_str();
+ if (mSlicerManagers[index]->SetFusion(file.toStdString(),
+ reader->GetNumberOfDimensions(), component)) {
+ //create an item in the tree with good settings
+ QTreeWidgetItem *item = new QTreeWidgetItem();
+ item->setData(0,Qt::UserRole,file.toStdString().c_str());
+ item->setData(1,Qt::UserRole,tr("fusion"));
+ QFileInfo fileinfo(filename.c_str()); //Do not show the path
+ item->setData(COLUMN_IMAGE_NAME,Qt::DisplayRole,fileinfo.fileName());
+ item->setToolTip(COLUMN_IMAGE_NAME,fileinfo.absoluteFilePath());
+ qApp->processEvents();
- //Create the buttons for reload and close
- qApp->processEvents();
- QTreePushButton* cButton = new QTreePushButton;
- cButton->setItem(item);
- cButton->setColumn(COLUMN_CLOSE_IMAGE);
- cButton->setToolTip(tr("close image"));
- cButton->setIcon(QIcon(QString::fromUtf8(":/common/icons/exit.png")));
- connect(cButton,SIGNAL(clickedInto(QTreeWidgetItem*, int)),
- this,SLOT(CloseImage(QTreeWidgetItem*, int)));
+ for (int j = 1; j <= 4; j++) {
+ item->setData(j,Qt::CheckStateRole,DataTree->topLevelItem(index)->data(j,Qt::CheckStateRole));
+ mSlicerManagers[index]->GetSlicer(j-1)->SetActorVisibility("fusion",0,
+ DataTree->topLevelItem(index)->data(j,Qt::CheckStateRole).toInt());
+ }
- QTreePushButton* rButton = new QTreePushButton;
- rButton->setItem(item);
- rButton->setColumn(COLUMN_RELOAD_IMAGE);
- rButton->setToolTip(tr("reload image"));
- rButton->setIcon(QIcon(QString::fromUtf8(":/common/icons/rotateright.png")));
- connect(rButton,SIGNAL(clickedInto(QTreeWidgetItem*, int)),
- this,SLOT(ReloadImage(QTreeWidgetItem*, int)));
+ //Create the buttons for reload and close
+ qApp->processEvents();
+ QTreePushButton* cButton = new QTreePushButton;
+ cButton->setItem(item);
+ cButton->setColumn(COLUMN_CLOSE_IMAGE);
+ cButton->setToolTip(tr("close image"));
+ cButton->setIcon(QIcon(QString::fromUtf8(":/common/icons/exit.png")));
+ connect(cButton,SIGNAL(clickedInto(QTreeWidgetItem*, int)),
+ this,SLOT(CloseImage(QTreeWidgetItem*, int)));
- DataTree->topLevelItem(index)->setExpanded(1);
- DataTree->topLevelItem(index)->addChild(item);
- DataTree->setItemWidget(item, COLUMN_CLOSE_IMAGE, cButton);
- DataTree->setItemWidget(item, COLUMN_RELOAD_IMAGE, rButton);
+ QTreePushButton* rButton = new QTreePushButton;
+ rButton->setItem(item);
+ rButton->setColumn(COLUMN_RELOAD_IMAGE);
+ rButton->setToolTip(tr("reload image"));
+ rButton->setIcon(QIcon(QString::fromUtf8(":/common/icons/rotateright.png")));
+ connect(rButton,SIGNAL(clickedInto(QTreeWidgetItem*, int)),
+ this,SLOT(ReloadImage(QTreeWidgetItem*, int)));
- //set the id of the image
- QString id = DataTree->topLevelItem(index)->data(COLUMN_IMAGE_NAME,Qt::UserRole).toString();
- item->setData(COLUMN_IMAGE_NAME,Qt::UserRole,id.toStdString().c_str());
- UpdateTree();
- qApp->processEvents();
- ImageInfoChanged();
- QApplication::restoreOverrideCursor();
- } else {
- QApplication::restoreOverrideCursor();
- QString error = "Cannot import the new image.\n";
- error += mSlicerManagers[index]->GetLastError().c_str();
- QMessageBox::information(this,tr("Problem reading image !"),error);
- }
+ DataTree->topLevelItem(index)->setExpanded(1);
+ DataTree->topLevelItem(index)->addChild(item);
+ DataTree->setItemWidget(item, COLUMN_CLOSE_IMAGE, cButton);
+ DataTree->setItemWidget(item, COLUMN_RELOAD_IMAGE, rButton);
+
+ //set the id of the image
+ QString id = DataTree->topLevelItem(index)->data(COLUMN_IMAGE_NAME,Qt::UserRole).toString();
+ item->setData(COLUMN_IMAGE_NAME,Qt::UserRole,id.toStdString().c_str());
+ UpdateTree();
+ qApp->processEvents();
+ ImageInfoChanged();
+ QApplication::restoreOverrideCursor();
} else {
+ QApplication::restoreOverrideCursor();
QString error = "Cannot import the new image.\n";
+ error += mSlicerManagers[index]->GetLastError().c_str();
QMessageBox::information(this,tr("Problem reading image !"),error);
}
+ } else {
+ QString error = "Cannot import the new image.\n";
+ QMessageBox::information(this,tr("Problem reading image !"),error);
}
}
//------------------------------------------------------------------------------
QTreeWidgetItem *item = new QTreeWidgetItem();
item->setData(0,Qt::UserRole,filename.toStdString().c_str());
item->setData(1,Qt::UserRole,tr("vector"));
- item->setData(COLUMN_IMAGE_NAME,Qt::DisplayRole,filename);
+ QFileInfo fileinfo(filename); //Do not show the path
+ item->setData(COLUMN_IMAGE_NAME,Qt::DisplayRole,fileinfo.fileName());
+ item->setToolTip(COLUMN_IMAGE_NAME,fileinfo.absoluteFilePath());
qApp->processEvents();
for (int j = 1; j <= 4; j++) {
//------------------------------------------------------------------------------
-void vvMainWindow::SetVFProperty(int subsampling, int scale, int log, int width)
+void vvMainWindow::SetVFProperty(int subsampling, int scale, int log, int width, double r, double g, double b)
{
int index = GetSlicerIndexFromItem(DataTree->selectedItems()[0]);
if (mSlicerManagers[index]->GetSlicer(0)->GetVF()) {
mSlicerManagers[index]->GetSlicer(i)->SetVFSubSampling(subsampling);
mSlicerManagers[index]->GetSlicer(i)->SetVFScale(scale);
mSlicerManagers[index]->GetSlicer(i)->SetVFWidth(width);
+ mSlicerManagers[index]->GetSlicer(i)->SetVFColor(r,g,b);
if (log > 0)
mSlicerManagers[index]->GetSlicer(i)->SetVFLog(1);
else
//------------------------------------------------------------------------------
void vvMainWindow::AddLink(QString image1,QString image2)
{
+ unsigned int sm1 = 0;
+ unsigned int sm2 = 0;
+
for (unsigned int i = 0; i < mSlicerManagers.size(); i++) {
if (image1.toStdString() == mSlicerManagers[i]->GetId()) {
mSlicerManagers[i]->AddLink(image2.toStdString());
+ sm1 = i;
}
if (image2.toStdString() == mSlicerManagers[i]->GetId()) {
mSlicerManagers[i]->AddLink(image1.toStdString());
+ sm2 = i;
}
}
+
+ if (linkPanel->isLinkAll()) {
+ emit UpdateLinkedNavigation(mSlicerManagers[sm1]->GetId(), mSlicerManagers[mCurrentPickedImageIndex]);
+ emit UpdateLinkedNavigation(mSlicerManagers[sm2]->GetId(), mSlicerManagers[mCurrentPickedImageIndex]);
+ }
+ else {
+ emit UpdateLinkedNavigation(mSlicerManagers[sm2]->GetId(), mSlicerManagers[sm1]);
+ }
}
+
//------------------------------------------------------------------------------
//------------------------------------------------------------------------------
void vvMainWindow::RemoveLink(QString image1,QString image2)
{
- // DD("vvMainWindow:RemoveLink");
for (unsigned int i = 0; i < mSlicerManagers.size(); i++) {
if (image1.toStdString() == mSlicerManagers[i]->GetId()) {
mSlicerManagers[i]->RemoveLink(image2.toStdString());
if (value == NOVerticalSlider->value()) return;
else value = NOVerticalSlider->value();
// int value = NOVerticalSlider->value();
- for (unsigned int i = 0; i < mSlicerManagers.size(); i++)
- {
- if (DataTree->topLevelItem(i)->data(COLUMN_UL_VIEW,Qt::CheckStateRole).toInt() > 1)
- {
- if (mSlicerManagers[i]->GetSlicer(0)->GetSlice() != value) {
- mSlicerManagers[i]->GetSlicer(0)->SetSlice(value);
- mSlicerManagers[i]->VerticalSliderHasChanged(0, value);
-
- // If nor Update/Render -> slider not work
- // only render = ok navigation, but for contour Update needed but slower ?
-
- mSlicerManagers[i]->UpdateSlice(0); // <-- DS add this. Not too much update ? YES. but needed for ImageContour ...
- //mSlicerManagers[i]->GetSlicer(0)->Render(); // <-- DS add this, needed for contour, seems ok ? not too slow ?
- }
- break;
- }
+ for (unsigned int i = 0; i < mSlicerManagers.size(); i++) {
+ if (DataTree->topLevelItem(i)->data(COLUMN_UL_VIEW,Qt::CheckStateRole).toInt() > 1) {
+ if (mSlicerManagers[i]->GetSlicer(0)->GetSlice() != value) {
+ mSlicerManagers[i]->GetSlicer(0)->SetSlice(value);
+ mSlicerManagers[i]->VerticalSliderHasChanged(0, value);
+
+ // If nor Update/Render -> slider not work
+ // only render = ok navigation, but for contour Update needed but slower ?
+
+ mSlicerManagers[i]->UpdateSlice(0); // <-- DS add this. Not too much update ? YES. but needed for ImageContour ...
+ //mSlicerManagers[i]->GetSlicer(0)->Render(); // <-- DS add this, needed for contour, seems ok ? not too slow ?
+ }
+ break;
}
+ }
}
//------------------------------------------------------------------------------
//------------------------------------------------------------------------------
void vvMainWindow::SOVerticalSliderChanged()
{
- // DD("SOVerticalSliderChanged");
static int value=-1;
- // DD(value);
-// DD(SOVerticalSlider->value());
if (value == SOVerticalSlider->value()) return;
else value = SOVerticalSlider->value();
//int value = SOVerticalSlider->value();
vvSurfaceViewerDialog surfaceViewer;
surfaceViewer.exec();
}
+//------------------------------------------------------------------------------
+
//------------------------------------------------------------------------------
-void vvMainWindow::AddImage(vvImage::Pointer image,std::string filename)
+int vvMainWindow::GetImageDuplicateFilenameNumber(std::string filename)
{
+ int number=0;
+ for(unsigned int l=0; l<mSlicerManagers.size(); l++) {
+ vvSlicerManager * v = mSlicerManagers[l];
+ if (v->GetBaseFileName() ==
+ vtksys::SystemTools::GetFilenameName(vtksys::SystemTools::GetFilenameWithoutLastExtension(filename))) {
+ number = std::max(number, v->GetBaseFileNameNumber()+1);
+ }
+ }
+ return number;
+}
+//------------------------------------------------------------------------------
+
+
+//------------------------------------------------------------------------------
+vvSlicerManager* vvMainWindow::AddImage(vvImage::Pointer image,std::string filename)
+{
+ // Change filename if another image exist with the same name
+ int number = GetImageDuplicateFilenameNumber(filename);
+
+ // Create new SliceManager
vvSlicerManager* slicer_manager = new vvSlicerManager(4);
- slicer_manager->SetImage(image);
- slicer_manager->SetFilename(filename);
+ slicer_manager->SetImage(image);//, IMAGE, number);
+ // filename = filename+"_"+clitk::toString(number);
+ slicer_manager->SetFilename(filename, number);
mSlicerManagers.push_back(slicer_manager);
//create an item in the tree with good settings
connect(mSlicerManagers.back(), SIGNAL(currentImageChanged(std::string)),
this, SLOT(CurrentImageChanged(std::string)));
+ connect(mSlicerManagers.back(), SIGNAL(currentPickedImageChanged(std::string)),
+ this, SLOT(CurrentPickedImageChanged(std::string)));
connect(mSlicerManagers.back(), SIGNAL(UpdatePosition(int, double, double, double, double, double, double, double)),
this, SLOT(MousePositionChanged(int,double, double, double, double, double, double, double)));
connect(mSlicerManagers.back(), SIGNAL(UpdateVector(int, double, double, double, double)),
this,SLOT(UpdateSliceRange(int,int,int,int,int)));
connect(mSlicerManagers.back(), SIGNAL(UpdateLinkManager(std::string,int,double,double,double,int)),
this,SLOT(UpdateLinkManager(std::string,int,double,double,double,int)));
+ connect(mSlicerManagers.back(), SIGNAL(UpdateLinkedNavigation(std::string,vvSlicerManager*)),
+ this,SLOT(UpdateLinkedNavigation(std::string,vvSlicerManager*)));
connect(mSlicerManagers.back(), SIGNAL(ChangeImageWithIndexOffset(vvSlicerManager*,int,int)),
this,SLOT(ChangeImageWithIndexOffset(vvSlicerManager*,int,int)));
connect(mSlicerManagers.back(), SIGNAL(LandmarkAdded()),landmarksPanel,SLOT(AddPoint()));
ShowLastImage();
InitDisplay();
qApp->processEvents();
+
+ // End
+ ImageInfoChanged();
+ return slicer_manager;
}
//------------------------------------------------------------------------------