Added Manual Registration Tool with updated Median Filter tool

[clitk.git] / vv / vvMainWindow.cxx

diff --git a/vv/vvMainWindow.cxx b/vv/vvMainWindow.cxx
index 516c736acbc5eef76cdcbb9d56848464e2125ad4..a35922f342a414613cf16e48a9c8abae17c422cc 100644 (file)
--- a/vv/vvMainWindow.cxx
+++ b/vv/vvMainWindow.cxx
@@ -33,7 +33,6 @@
 #include "vvSlicer.h"
 #include "vvInteractorStyleNavigator.h"
 #include "vvImageWriter.h"
-#include "vvResamplerDialog.h"
 #include "vvSegmentationDialog.h"
 #include "vvSurfaceViewerDialog.h"
 #include "vvDeformationDialog.h"
@@ -105,6 +104,7 @@ vvMainWindow::vvMainWindow():vvMainWindowBase() {
   mContextMenu = &contextMenu;
   mMenuExperimentalTools = menuExperimental;
   mMainWidget = this;
+  mCurrentTime = -1;
 
   //Init the contextMenu
   this->setContextMenuPolicy(Qt::CustomContextMenu);
@@ -255,8 +255,6 @@ vvMainWindow::vvMainWindow():vvMainWindowBase() {
   connect(actionDocumentation,SIGNAL(triggered()),this,SLOT(ShowDocumentation()));
 
   ///////////////////////////////////////////////
-  contextMenu.addAction(actionResampler);
-  connect(actionResampler,SIGNAL(triggered()),this,SLOT(ResampleCurrentImage()));
   connect(actionSegmentation,SIGNAL(triggered()),this,SLOT(SegmentationOnCurrentImage()));
   connect(actionSurface_Viewer,SIGNAL(triggered()),this,SLOT(SurfaceViewerLaunch()));
   ///////////////////////////////////////////////
@@ -922,6 +920,17 @@ void vvMainWindow::LoadImages(std::vector<std::string> files, LoadedImageType fi
     }
   QApplication::restoreOverrideCursor();
 
+  // Try to guess default WindowLevel
+  double range[2];
+  mSlicerManagers.back()->GetImage()->GetFirstVTKImageData()->GetScalarRange(range);
+  // DD(range[0]);
+  //   DD(range[1]);
+  if ((range[0] == 0) && (range[1] == 1)) {
+    presetComboBox->setCurrentIndex(5);// binary
+  }
+  else {
+    // TODO
+  }
 }
 //------------------------------------------------------------------------------
 
@@ -1536,7 +1545,7 @@ void vvMainWindow::CloseImage(QTreeWidgetItem* item, int column) {
       msgBox.addButton(tr("Cancel"), QMessageBox::RejectRole);
       if (msgBox.exec() == QMessageBox::AcceptRole)
         {
-          this->close();
+         this->close();
         }
     }
   else
@@ -1895,6 +1904,7 @@ void vvMainWindow::SelectOverlayImage() {
 
 //------------------------------------------------------------------------------
 void vvMainWindow::AddOverlayImage(int index, QString file) {
+
   mInputPathName = itksys::SystemTools::GetFilenamePath(file.toStdString()).c_str();
   itk::ImageIOBase::Pointer reader = itk::ImageIOFactory::CreateImageIO(
                                                                         file.toStdString().c_str(), itk::ImageIOFactory::ReadMode);
@@ -1905,7 +1915,7 @@ void vvMainWindow::AddOverlayImage(int index, QString file) {
   QApplication::setOverrideCursor(QCursor(Qt::WaitCursor));
   vvProgressDialog progress("Opening " + file.toStdString());
   qApp->processEvents();
-
+  
   std::string filename = itksys::SystemTools::GetFilenameWithoutExtension(file.toStdString()).c_str();
   if (mSlicerManagers[index]->SetOverlay(file.toStdString(),dimension, component))
     {
@@ -1920,7 +1930,7 @@ void vvMainWindow::AddOverlayImage(int index, QString file) {
         {
           item->setData(j,Qt::CheckStateRole,DataTree->topLevelItem(index)->data(j,Qt::CheckStateRole));
           mSlicerManagers[index]->GetSlicer(j-1)->SetActorVisibility("overlay",0,
-                                                                     DataTree->topLevelItem(index)->data(j,Qt::CheckStateRole).toInt());
+                                                                    DataTree->topLevelItem(index)->data(j,Qt::CheckStateRole).toInt());
         }
 
       //Create the buttons for reload and close
@@ -2059,8 +2069,10 @@ void vvMainWindow::AddFusionImage()
         }
     }
 }
+//------------------------------------------------------------------------------
 
 
+//------------------------------------------------------------------------------
 void vvMainWindow::OpenField()
 {
   int index = GetSlicerIndexFromItem(DataTree->selectedItems()[0]);
@@ -2081,7 +2093,10 @@ void vvMainWindow::OpenField()
   if (!file.isEmpty())
     AddField(file,index);
 }
+//------------------------------------------------------------------------------
 
+
+//------------------------------------------------------------------------------
 void vvMainWindow::AddFieldEntry(QString filename,int index,bool from_disk)
 {
   //create an item in the tree with good settings
@@ -2130,7 +2145,10 @@ void vvMainWindow::AddFieldEntry(QString filename,int index,bool from_disk)
   ImageInfoChanged();
   QApplication::restoreOverrideCursor();
 }
+//------------------------------------------------------------------------------
+
 
+//------------------------------------------------------------------------------
 void vvMainWindow::AddField(vvImage::Pointer vf,QString file,int index)
 {
   QApplication::setOverrideCursor(QCursor(Qt::WaitCursor));
@@ -2147,7 +2165,10 @@ void vvMainWindow::AddField(vvImage::Pointer vf,QString file,int index)
     }
   QApplication::restoreOverrideCursor();
 }
+//------------------------------------------------------------------------------
+
 
+//------------------------------------------------------------------------------
 void vvMainWindow::AddField(QString file,int index)
 {
   if (QFile::exists(file))
@@ -2183,6 +2204,7 @@ void vvMainWindow::AddField(QString file,int index)
 }
 //------------------------------------------------------------------------------
 
+
 //------------------------------------------------------------------------------
 void vvMainWindow::SetVFProperty(int subsampling, int scale, int log) {
   int index = GetSlicerIndexFromItem(DataTree->selectedItems()[0]);
@@ -2201,6 +2223,7 @@ void vvMainWindow::SetVFProperty(int subsampling, int scale, int log) {
 }
 //------------------------------------------------------------------------------
 
+
 //------------------------------------------------------------------------------
 void vvMainWindow::SetOverlayProperty(int color) {
   int index = GetSlicerIndexFromItem(DataTree->selectedItems()[0]);
@@ -2376,28 +2399,41 @@ void vvMainWindow::HorizontalSliderMoved(int value,int column, int slicer_index)
         }
     }
 }
+//------------------------------------------------------------------------------
+
 
 //------------------------------------------------------------------------------
 void vvMainWindow::NOHorizontalSliderMoved() {
+  // if (mCurrentTime == NOHorizontalSlider->value()) return;
   HorizontalSliderMoved(NOHorizontalSlider->value(),COLUMN_UL_VIEW,0);
+ //  mCurrentTime = NOHorizontalSlider->value();
 }
 //------------------------------------------------------------------------------
 
+
 //------------------------------------------------------------------------------
 void vvMainWindow::NEHorizontalSliderMoved() {
+  // if (mCurrentTime == NEHorizontalSlider->value()) return;
   HorizontalSliderMoved(NEHorizontalSlider->value(),COLUMN_UR_VIEW,1);
+ //  mCurrentTime = NEHorizontalSlider->value();
 }
 //------------------------------------------------------------------------------
 
+
 //------------------------------------------------------------------------------
 void vvMainWindow::SOHorizontalSliderMoved() {
+  // if (mCurrentTime == SOHorizontalSlider->value()) return;
   HorizontalSliderMoved(SOHorizontalSlider->value(),COLUMN_DL_VIEW,2);
+  // mCurrentTime = SOHorizontalSlider->value();
 }
 //------------------------------------------------------------------------------
 
+
 //------------------------------------------------------------------------------
 void vvMainWindow::SEHorizontalSliderMoved() {
+  // if (mCurrentTime == SEHorizontalSlider->value()) return;
   HorizontalSliderMoved(SEHorizontalSlider->value(),COLUMN_DR_VIEW,3);
+  // mCurrentTime = SEHorizontalSlider->value();
 }
 //------------------------------------------------------------------------------
 
@@ -2409,14 +2445,16 @@ void vvMainWindow::NOVerticalSliderChanged() {
       if (DataTree->topLevelItem(i)->data(COLUMN_UL_VIEW,Qt::CheckStateRole).toInt() > 1)
         {
           mSlicerManagers[i]->GetSlicer(0)->SetSlice(value);
-          // mSlicerManagers[i]->UpdateSlice(0);
-          // <-- DS add this. Not too much update ? YES.
+          mSlicerManagers[i]->VerticalSliderHasChanged(0, value);
+          // mSlicerManagers[i]->UpdateSlice(0);  // <-- DS add this. Not too much update ? YES.
+         mSlicerManagers[i]->GetSlicer(0)->Render(); // <-- DS add this, needed for contour, seems ok ? not too slow ? 
           break;
         }
     }
 }
 //------------------------------------------------------------------------------
 
+
 //------------------------------------------------------------------------------
 void vvMainWindow::NEVerticalSliderChanged() {
   int value = NEVerticalSlider->value();
@@ -2425,12 +2463,15 @@ void vvMainWindow::NEVerticalSliderChanged() {
       if (DataTree->topLevelItem(i)->data(COLUMN_UR_VIEW,Qt::CheckStateRole).toInt() > 1)
         {
           mSlicerManagers[i]->GetSlicer(1)->SetSlice(value);
+          mSlicerManagers[i]->VerticalSliderHasChanged(1, value);
+         mSlicerManagers[i]->GetSlicer(1)->Render(); // <-- DS add this, needed for contour, seems ok ? not too slow ? 
           break;
         }
     }
 }
 //------------------------------------------------------------------------------
 
+
 //------------------------------------------------------------------------------
 void vvMainWindow::SOVerticalSliderChanged() {
   int value = SOVerticalSlider->value();
@@ -2439,12 +2480,15 @@ void vvMainWindow::SOVerticalSliderChanged() {
       if (DataTree->topLevelItem(i)->data(COLUMN_DL_VIEW,Qt::CheckStateRole).toInt() > 1)
         {
           mSlicerManagers[i]->GetSlicer(2)->SetSlice(value);
+          mSlicerManagers[i]->VerticalSliderHasChanged(2, value);
+         mSlicerManagers[i]->GetSlicer(2)->Render(); // <-- DS add this, needed for contour, seems ok ? not too slow ? 
           break;
         }
     }
 }
 //------------------------------------------------------------------------------
 
+
 //------------------------------------------------------------------------------
 void vvMainWindow::SEVerticalSliderChanged() {
   int value = SEVerticalSlider->value();
@@ -2453,12 +2497,15 @@ void vvMainWindow::SEVerticalSliderChanged() {
       if (DataTree->topLevelItem(i)->data(COLUMN_DR_VIEW,Qt::CheckStateRole).toInt() > 1)
         {
           mSlicerManagers[i]->GetSlicer(3)->SetSlice(value);
+          mSlicerManagers[i]->VerticalSliderHasChanged(3, value);
+         mSlicerManagers[i]->GetSlicer(3)->Render(); // <-- DS add this, needed for contour, seems ok ? not too slow ? 
           break;
         }
     }
 }
 //------------------------------------------------------------------------------
 
+
 //------------------------------------------------------------------------------
 void vvMainWindow::UpdateSlice(int slicer, int slice) {
   if (slicer == 0) {
@@ -2474,6 +2521,7 @@ void vvMainWindow::UpdateSlice(int slicer, int slice) {
 }
 //------------------------------------------------------------------------------
 
+
 //------------------------------------------------------------------------------
 void vvMainWindow::UpdateTSlice(int slicer, int slice) {
   switch (slicer)
@@ -2494,6 +2542,7 @@ void vvMainWindow::UpdateTSlice(int slicer, int slice) {
 }
 //------------------------------------------------------------------------------
 
+
 //------------------------------------------------------------------------------
 void vvMainWindow::UpdateSliceRange(int slicer, int min, int max, int tmin, int tmax) {
   int position = int((min+max)/2);
@@ -2529,6 +2578,7 @@ void vvMainWindow::UpdateSliceRange(int slicer, int min, int max, int tmin, int
 }
 //------------------------------------------------------------------------------
 
+
 //------------------------------------------------------------------------------
 void vvMainWindow::SaveNOScreenshot() {
   vtkWindowToImageFilter *w2i = vtkWindowToImageFilter::New();
@@ -2539,6 +2589,7 @@ void vvMainWindow::SaveNOScreenshot() {
 }
 //------------------------------------------------------------------------------
 
+
 //------------------------------------------------------------------------------
 void vvMainWindow::SaveNEScreenshot() {
   vtkWindowToImageFilter *w2i = vtkWindowToImageFilter::New();
@@ -2549,6 +2600,7 @@ void vvMainWindow::SaveNEScreenshot() {
 }
 //------------------------------------------------------------------------------
 
+
 //------------------------------------------------------------------------------
 void vvMainWindow::SaveSOScreenshot() {
   vtkWindowToImageFilter *w2i = vtkWindowToImageFilter::New();
@@ -2559,6 +2611,7 @@ void vvMainWindow::SaveSOScreenshot() {
 }
 //------------------------------------------------------------------------------
 
+
 //------------------------------------------------------------------------------
 void vvMainWindow::SaveSEScreenshot() {
   vtkWindowToImageFilter *w2i = vtkWindowToImageFilter::New();
@@ -2569,6 +2622,7 @@ void vvMainWindow::SaveSEScreenshot() {
 }
 //------------------------------------------------------------------------------
 
+
 //------------------------------------------------------------------------------
 void vvMainWindow::SaveScreenshot(vtkImageData* image) {
   QString Extensions = "Images( *.png);;";
@@ -2633,6 +2687,7 @@ void vvMainWindow::SaveScreenshot(vtkImageData* image) {
 }
 //------------------------------------------------------------------------------
 
+
 //------------------------------------------------------------------------------
 void vvMainWindow::GoToCursor() {
   int index = GetSlicerIndexFromItem(DataTree->selectedItems()[0]);
@@ -2719,16 +2774,6 @@ void vvMainWindow::UpdateRenderWindows() {
 }
 //------------------------------------------------------------------------------
 
-//------------------------------------------------------------------------------
-void vvMainWindow::ResampleCurrentImage() {
-  vvResamplerDialog resampler;
-  int index = GetSlicerIndexFromItem(DataTree->selectedItems()[0]);
-  resampler.SetSlicerManagers(mSlicerManagers,index);
-  if (resampler.exec()) 
-    AddImage(resampler.GetOutput(),resampler.GetOutputFileName());
-}
-//------------------------------------------------------------------------------
-
 //------------------------------------------------------------------------------
 void vvMainWindow::SegmentationOnCurrentImage() {
   int index = GetSlicerIndexFromItem(DataTree->selectedItems()[0]);