#define COLUMN_RELOAD_IMAGE 6
#define COLUMN_IMAGE_NAME 7
-#define EXTENSIONS "Images ( *.bmp *.png *.jpeg *.jpg *.tif *.mhd *.mha *.hdr *.vox *.his *.xdr *.SCAN *.nii *.nrrd *.nhdr)"
+#ifdef CLITK_PRIVATE_FEATURES
+#define EXTENSIONS "Images ( *.bmp *.png *.jpeg *.jpg *.tif *.mhd *.mha *.hdr *.vox *.his *.xdr *.SCAN *.nii *.nrrd *.nhdr *.refscan *.nii.gz *.usf)"
+#else
+#define EXTENSIONS "Images ( *.bmp *.png *.jpeg *.jpg *.tif *.mhd *.mha *.hdr *.vox *.his *.xdr *.SCAN *.nii *.nrrd *.nhdr *.refscan *.nii.gz)"
+#endif
+
/*Data Tree values
0,Qt::UserRole full filename
contextMenu.addAction(actionAdd_fusion_image);
contextActions.push_back(actionAdd_fusion_image);
+ contextMenu.addAction(actionAdd_USSequence_toCT);
+ contextActions.push_back(actionAdd_USSequence_toCT);
+
+
contextMenu.addSeparator();
QAction* actionResetMatrix = contextMenu.addAction(QIcon(QString::fromUtf8(":/common/icons/identity.png")),
tr("Reset transformation to identity"));
actionSave_As->setEnabled(0);
actionAdd_VF_to_current_Image->setEnabled(0);
actionAdd_fusion_image->setEnabled(0);
+ actionAdd_USSequence_toCT->setEnabled(0);
//init the sliders
verticalSliders.push_back(NOVerticalSlider);
connect(actionExit,SIGNAL(triggered()),this,SLOT(close()));
connect(actionAdd_VF_to_current_Image,SIGNAL(triggered()),this,SLOT(OpenField()));
connect(actionAdd_fusion_image,SIGNAL(triggered()),this,SLOT(SelectFusionImage()));
- connect(actionAdd_overlay_image_to_current_image,SIGNAL(triggered()), this,SLOT(SelectOverlayImage())); connect(actionNavigation_Help,SIGNAL(triggered()),this,SLOT(ShowHelpDialog()));
+ connect(actionAdd_overlay_image_to_current_image,SIGNAL(triggered()), this,SLOT(SelectOverlayImage()));
+ connect(actionAdd_USSequence_toCT,SIGNAL(triggered()), this,SLOT(SelectFusionSequence()));
+ connect(actionNavigation_Help,SIGNAL(triggered()),this,SLOT(ShowHelpDialog()));
connect(actionDocumentation,SIGNAL(triggered()),this,SLOT(ShowDocumentation()));
connect(actionRegister_vv,SIGNAL(triggered()),this,SLOT(PopupRegisterForm()));
+ connect(overlayPanel, SIGNAL(FusionSequenceSignalButtonPressed()), this, SLOT(SelectFusionSequenceTemporalSignal()));
+
+
///////////////////////////////////////////////
connect(actionSegmentation,SIGNAL(triggered()),this,SLOT(SegmentationOnCurrentImage()));
connect(actionSurface_Viewer,SIGNAL(triggered()),this,SLOT(SurfaceViewerLaunch()));
connect(levelSpinBox,SIGNAL(editingFinished()),this,SLOT(WindowLevelEdited()));
connect(colorMapComboBox,SIGNAL(currentIndexChanged(int)),this,SLOT(UpdateColorMap()));
connect(presetComboBox,SIGNAL(currentIndexChanged(int)),this,SLOT(UpdateWindowLevel()));
+ connect(slicingPresetComboBox, SIGNAL(currentIndexChanged(int)),this,SLOT(UpdateSlicingPreset()));
connect(inverseButton,SIGNAL(clicked()),this,SLOT(SwitchWindowLevel()));
connect(applyWindowLevelToAllButton,SIGNAL(clicked()),this,SLOT(ApplyWindowLevelToAllImages()));
-
connect(this,SIGNAL(customContextMenuRequested(QPoint)),this,SLOT(ShowContextMenu(QPoint)));
- connect(linkPanel,SIGNAL(addLink(QString,QString)),this,SLOT(AddLink(QString,QString)));
+ connect(linkPanel,SIGNAL(addLink(QString,QString,bool)),this,SLOT(AddLink(QString,QString,bool)));
connect(linkPanel,SIGNAL(removeLink(QString,QString)),this,SLOT(RemoveLink(QString,QString)));
connect(overlayPanel,SIGNAL(VFPropertyUpdated(int,int,int,int,double,double,double)),this,SLOT(SetVFProperty(int,int,int,int,double,double,double)));
connect(overlayPanel,SIGNAL(OverlayPropertyUpdated(int,int,double,double)),
this,SLOT(SetFusionProperty(int,int,int,double,double, bool)));
connect(landmarksPanel,SIGNAL(UpdateRenderWindows()),this,SLOT(UpdateRenderWindows()));
+ connect(overlayPanel,SIGNAL(FusionSequencePropertyUpdated(int, bool, unsigned int, bool)),
+ this,SLOT(SetFusionSequenceProperty(int, bool,unsigned int, bool)));
+
+
playMode = 0;//pause
mFrameRate = 10;
playButton->setEnabled(0);
//timerMemory->setInterval(5);
connect(timerMemory, SIGNAL(timeout()), this, SLOT(UpdateMemoryUsage()));
timerMemory->start(2000);
+
}
//------------------------------------------------------------------------------
void vvMainWindow::show()
mInputPathName = itksys::SystemTools::GetFilenamePath(files[0].toStdString()).c_str();
std::vector<std::string> vector;
- unsigned int currentDim = 0;
- std::vector<double> currentSpacing;
- std::vector<int> currentSize;
- std::vector<double> currentOrigin;
-
- for (int i = 0; i < files.size(); i++) {
- itk::ImageIOBase::Pointer reader = itk::ImageIOFactory::CreateImageIO(
- files[i].toStdString().c_str(), itk::ImageIOFactory::ReadMode);
- if (reader) {
- reader->SetFileName(files[i].toStdString().c_str());
- reader->ReadImageInformation();
- if (i == 0)
- currentDim = reader->GetNumberOfDimensions();
- bool IsOk = true;
- for (unsigned int j = 0; j < currentDim; j++) {
- if (i == 0) {
- if (j == 0) {
- currentSpacing.resize(currentDim);
- currentSize.resize(currentDim);
- currentOrigin.resize(currentDim);
- }
- currentOrigin[j] = reader->GetOrigin(j);
- currentSpacing[j] = reader->GetSpacing(j);
- currentSize[j] = reader->GetDimensions(j);
- } else if (currentDim != reader->GetNumberOfDimensions()
- || currentSpacing[j] != reader->GetSpacing(j)
- || currentSize[j] != (int)reader->GetDimensions(j)
- || currentOrigin[j] != reader->GetOrigin(j)) {
- QString error = "Cannot read file (too different from others ";
- error += files[i].toStdString().c_str();
- QMessageBox::information(this,tr("Reading problem"),error);
- IsOk = false;
- break;
- }
- }
- if (IsOk)
- vector.push_back(files[i].toStdString());
- } else {
- QString error = "Cannot read file info for ";
- error += files[i].toStdString().c_str();
- error += "\n";
- error += "Maybe you're trying to open an image in an unsupported format?\n";
- QMessageBox::information(this,tr("Reading problem"),error);
- }
- }
+ for (int i = 0; i < files.size(); i++)
+ vector.push_back(files[i].toStdString());
sort(vector.begin(),vector.end());
if (vector.size() > 1)
LoadImages(vector, vvImageReader::MERGEDWITHTIME);
int numberofsuccesulreads=0;
//open images as 1 or multiples
for (int i = 0; i < fileSize; i++) {
-
progress.SetText("Opening " + files[i]);
progress.SetProgress(i,fileSize);
qApp->processEvents();
- for (unsigned int j = 0; j < nSlices[i]; j++) {
+ for (unsigned int j = 0; j < nSlices[i]; j++) {
//read the image and put it in mSlicerManagers
vvSlicerManager* imageManager = new vvSlicerManager(4);
qApp->processEvents();
else {
SetImageSucceed = imageManager->SetImages(files,filetype, number);
}
- if (!SetImageSucceed) {
+
+ if (!SetImageSucceed) {
QApplication::restoreOverrideCursor();
QString error = "Cannot open file \n";
error += imageManager->GetLastError().c_str();
item->setToolTip(COLUMN_IMAGE_NAME, imageManager->GetListOfAbsoluteFilePathInOneString("image").c_str());
qApp->processEvents();
- //Create the buttons for reload and close
+ //Create the buttons for reload and close
qApp->processEvents();
QTreePushButton* cButton = new QTreePushButton;
cButton->setItem(item);
DataTree->setItemWidget(item, COLUMN_RELOAD_IMAGE, rButton);
//set the id of the image
- QString id = files[i].c_str() + QString::number(mSlicerManagers.size()-1);
+ QString id = QDir::current().absoluteFilePath(files[i].c_str()) + QString::number(mSlicerManagers.size()-1);
item->setData(COLUMN_IMAGE_NAME,Qt::UserRole,id.toStdString().c_str());
mSlicerManagers.back()->SetId(id.toStdString());
linkPanel->addImage(imageManager->GetFileName(), id.toStdString());
- connect(mSlicerManagers.back(), SIGNAL(currentImageChanged(std::string)),
+ connect(mSlicerManagers.back(), SIGNAL(currentImageChanged(std::string)),
this,SLOT(CurrentImageChanged(std::string)));
connect(mSlicerManagers.back(), SIGNAL(currentPickedImageChanged(std::string)),
this, SLOT(CurrentPickedImageChanged(std::string)));
this,SLOT(UpdateSlice(int,int)));
connect(mSlicerManagers.back(), SIGNAL(UpdateTSlice(int, int)),
this,SLOT(UpdateTSlice(int, int)));
+ connect(mSlicerManagers.back(), SIGNAL(UpdateTSlice(int, int)),
+ this,SLOT(ImageInfoChanged()));
connect(mSlicerManagers.back(), SIGNAL(UpdateSliceRange(int,int,int,int,int)),
this,SLOT(UpdateSliceRange(int,int,int,int,int)));
connect(mSlicerManagers.back(), SIGNAL(UpdateLinkManager(std::string,int,double,double,double,int)),
connect(mSlicerManagers.back(), SIGNAL(ChangeImageWithIndexOffset(vvSlicerManager*,int,int)),
this,SLOT(ChangeImageWithIndexOffset(vvSlicerManager*,int,int)));
connect(mSlicerManagers.back(),SIGNAL(LandmarkAdded()),landmarksPanel,SLOT(AddPoint()));
- InitSlicers();
+
+ InitSlicers();
numberofsuccesulreads++;
}
}
actionAdd_VF_to_current_Image->setEnabled(1);
actionAdd_fusion_image->setEnabled(1);
actionAdd_overlay_image_to_current_image->setEnabled(1);
+ actionAdd_USSequence_toCT->setEnabled(1);
actionNorth_East_Window->setEnabled(1);
actionNorth_West_Window->setEnabled(1);
actionSouth_East_Window->setEnabled(1);
colorMapComboBox->setEnabled(1);
for (int i = 0; i < DataTree->topLevelItem(index)->childCount(); i++) {
if (DataTree->topLevelItem(index)->child(i)->data(1,Qt::UserRole).toString() == "overlay" ||
- DataTree->topLevelItem(index)->child(i)->data(1,Qt::UserRole).toString() == "fusion") {
+ DataTree->topLevelItem(index)->child(i)->data(1,Qt::UserRole).toString() == "fusion" ||
+ DataTree->topLevelItem(index)->child(i)->data(1,Qt::UserRole).toString() == "fusionSequence") {
colorMapComboBox->setEnabled(0);
break;
}
}
- std::vector<double> origin;
+ std::vector<double> origin;
std::vector<double> inputSpacing;
std::vector<int> inputSize;
std::vector<double> sizeMM;
QString inputSizeInBytes;
QString image = DataTree->selectedItems()[0]->data(COLUMN_IMAGE_NAME,Qt::DisplayRole).toString();
- if (mSlicerManagers[index]->GetSlicer(0)->GetImage()->GetVTKImages().size() > 1 || playMode == 1) {
+ int nframes = mSlicerManagers[index]->GetSlicer(0)->GetTMax();
+
+ if (nframes > 1 || playMode == 1) {
playButton->setEnabled(1);
frameRateLabel->setEnabled(1);
frameRateSpinBox->setEnabled(1);
//read image header
int NPixel = 1;
+ int tSlice = 0;
vvImage::Pointer imageSelected;
if (DataTree->topLevelItem(index) == DataTree->selectedItems()[0]) {
imageSelected = mSlicerManagers[index]->GetSlicer(0)->GetImage();
+ tSlice = mSlicerManagers[index]->GetSlicer(0)->GetTSlice();
} else if (DataTree->selectedItems()[0]->data(1,Qt::UserRole).toString() == "vector") {
imageSelected = mSlicerManagers[index]->GetSlicer(0)->GetVF();
+ tSlice = mSlicerManagers[index]->GetSlicer(0)->GetOverlayTSlice();
} else if (DataTree->selectedItems()[0]->data(1,Qt::UserRole).toString() == "overlay") {
imageSelected = mSlicerManagers[index]->GetSlicer(0)->GetOverlay();
+ tSlice = mSlicerManagers[index]->GetSlicer(0)->GetOverlayTSlice();
} else if (DataTree->selectedItems()[0]->data(1,Qt::UserRole).toString() == "fusion") {
- imageSelected = mSlicerManagers[index]->GetSlicer(0)->GetFusion();
+ imageSelected = mSlicerManagers[index]->GetSlicer(0)->GetFusion();
+ tSlice = mSlicerManagers[index]->GetSlicer(0)->GetFusionTSlice();
}
+ else if (DataTree->selectedItems()[0]->data(1,Qt::UserRole).toString() == "fusionSequence") {
+ imageSelected = mSlicerManagers[index]->GetSlicer(0)->GetFusion();
+ tSlice = mSlicerManagers[index]->GetSlicer(0)->GetFusionTSlice();
+ }
else if (DataTree->selectedItems()[0]->data(1,Qt::UserRole).toString() == "contour") {
- imageSelected = mSlicerManagers[index]->GetSlicer(0)->GetImage();
+ imageSelected = mSlicerManagers[index]->GetSlicer(0)->GetImage();
+ tSlice = mSlicerManagers[index]->GetSlicer(0)->GetTSlice();
}
else {
- imageSelected = mSlicerManagers[index]->GetSlicer(0)->GetImage();
+ imageSelected = mSlicerManagers[index]->GetSlicer(0)->GetImage();
+ tSlice = mSlicerManagers[index]->GetSlicer(0)->GetTSlice();
}
- dimension = imageSelected->GetNumberOfDimensions();
+ dimension = imageSelected->GetNumberOfDimensions();
origin.resize(dimension);
inputSpacing.resize(dimension);
inputSize.resize(dimension);
NPixel *= inputSize[i];
}
inputSizeInBytes = GetSizeInBytes(imageSelected->GetActualMemorySize()*1000);
-
+
QString dim = QString::number(dimension) + " (";
dim += pixelType + ")";
infoPanel->setOrigin(GetVectorDoubleAsString(origin));
infoPanel->setSpacing(GetVectorDoubleAsString(inputSpacing));
infoPanel->setNPixel(QString::number(NPixel)+" ("+inputSizeInBytes+")");
- transformation = imageSelected->GetTransform()->GetMatrix();
+
+ transformation = imageSelected->GetTransform()[tSlice]->GetMatrix();
infoPanel->setTransformation(Get4x4MatrixDoubleAsString(transformation));
- landmarksPanel->SetCurrentLandmarks(mSlicerManagers[index]->GetLandmarks(),
+ landmarksPanel->SetCurrentLandmarks(mSlicerManagers[index]->GetLandmarks(),
mSlicerManagers[index]->GetSlicer(0)->GetImage()->GetVTKImages().size());
landmarksPanel->SetCurrentPath(mInputPathName.toStdString());
landmarksPanel->SetCurrentImage(mSlicerManagers[index]->GetFileName().c_str());
}
}
- infoPanel->setFileName(image);
+ infoPanel->setFileName(image);
infoPanel->setDimension(dim);
infoPanel->setSizePixel(GetVectorIntAsString(inputSize));
infoPanel->setSizeMM(GetVectorDoubleAsString(sizeMM));
break;
}
}
- WindowLevelChanged();
+ WindowLevelChanged();
+
+ slicingPresetComboBox->setCurrentIndex(mSlicerManagers[index]->GetSlicingPreset());
- if (mSlicerManagers[index]->GetSlicer(0)->GetVF()) {
+ if (mSlicerManagers[index]->GetSlicer(0)->GetVF()) {
overlayPanel->getVFName(mSlicerManagers[index]->GetVFName().c_str());
overlayPanel->getVFProperty(mSlicerManagers[index]->GetSlicer(0)->GetVFSubSampling(),
mSlicerManagers[index]->GetSlicer(0)->GetVFScale(),
} else {
overlayPanel->getOverlayName(mSlicerManagers[index]->GetOverlayName().c_str());
}
-
- if (mSlicerManagers[index]->GetSlicer(0)->GetFusion()) {
+
+ if (mSlicerManagers[index]->GetSlicer(0)->GetFusion()) {
overlayPanel->getFusionName(mSlicerManagers[index]->GetFusionName().c_str());
} else {
overlayPanel->getFusionName(mSlicerManagers[index]->GetFusionName().c_str());
//------------------------------------------------------------------------------
void vvMainWindow::ChangeViewMode()
{
- QList<int> size;
+ typedef struct _SIZE{
+ QSplitter* splitter;
+ QList<int> size1, size2;
+ int cols[3];
+ }SplitterSize;
+ SplitterSize sizes[4];
+ sizes[0].splitter = OSplitter;
+ sizes[0].size1.push_back(1);
+ sizes[0].size1.push_back(0);
+ sizes[0].size2.push_back(1);
+ sizes[0].size2.push_back(0);
+ sizes[0].cols[0] = 2;
+ sizes[0].cols[1] = 3;
+ sizes[0].cols[2] = 4;
+
+ sizes[1].splitter = ESplitter;
+ sizes[1].size1.push_back(0);
+ sizes[1].size1.push_back(1);
+ sizes[1].size2.push_back(1);
+ sizes[1].size2.push_back(0);
+ sizes[1].cols[0] = 1;
+ sizes[1].cols[1] = 3;
+ sizes[1].cols[2] = 4;
+
+ sizes[2].splitter = OSplitter;
+ sizes[2].size1.push_back(1);
+ sizes[2].size1.push_back(0);
+ sizes[2].size2.push_back(0);
+ sizes[2].size2.push_back(1);
+ sizes[2].cols[0] = 1;
+ sizes[2].cols[1] = 2;
+ sizes[2].cols[2] = 4;
+
+ sizes[3].splitter = ESplitter;
+ sizes[3].size1.push_back(0);
+ sizes[3].size1.push_back(1);
+ sizes[3].size2.push_back(0);
+ sizes[3].size2.push_back(1);
+ sizes[3].cols[0] = 1;
+ sizes[3].cols[1] = 2;
+ sizes[3].cols[2] = 3;
+
+ int slicer = mSlicerManagers[mCurrentPickedImageIndex]->GetSelectedSlicer();
if (viewMode == 1) {
- viewMode = 0;
- size.push_back(1);
- size.push_back(0);
- splitter_3->setSizes(size);
- OSplitter->setSizes(size);
- DataTree->setColumnHidden(2,1);
- DataTree->setColumnHidden(3,1);
- DataTree->setColumnHidden(4,1);
+ if (slicer >= 0) {
+ viewMode = 0;
+ splitter_3->setSizes(sizes[slicer].size1);
+ sizes[slicer].splitter->setSizes(sizes[slicer].size2);
+ DataTree->setColumnHidden(sizes[slicer].cols[0],1);
+ DataTree->setColumnHidden(sizes[slicer].cols[1],1);
+ DataTree->setColumnHidden(sizes[slicer].cols[2],1);
+ }
} else {
- viewMode = 1;
- size.push_back(1);
- size.push_back(1);
- splitter_3->setSizes(size);
- OSplitter->setSizes(size);
- DataTree->setColumnHidden(2,0);
- DataTree->setColumnHidden(3,0);
- DataTree->setColumnHidden(4,0);
+ QList<int> size;
+ if (slicer >= 0) {
+ viewMode = 1;
+ size.push_back(1);
+ size.push_back(1);
+ splitter_3->setSizes(size);
+ sizes[slicer].splitter->setSizes(size);
+ DataTree->setColumnHidden(sizes[slicer].cols[0],0);
+ DataTree->setColumnHidden(sizes[slicer].cols[1],0);
+ DataTree->setColumnHidden(sizes[slicer].cols[2],0);
+ }
}
UpdateRenderWindows();
/*
** the associated Slicer to redraw crosses.
*/
for (unsigned int i = 0; i < mSlicerManagers.size(); i++) {
- if (DataTree->topLevelItem(i)->data(COLUMN_UL_VIEW,Qt::CheckStateRole).toInt() > 1)
+// if (DataTree->topLevelItem(i)->data(COLUMN_UL_VIEW,Qt::CheckStateRole).toInt() > 1)
mSlicerManagers[i]->GetSlicer(0)->Render();
- if (DataTree->topLevelItem(i)->data(COLUMN_DL_VIEW,Qt::CheckStateRole).toInt() > 1)
+ mSlicerManagers[i]->GetSlicer(1)->Render();
+// if (DataTree->topLevelItem(i)->data(COLUMN_DL_VIEW,Qt::CheckStateRole).toInt() > 1)
mSlicerManagers[i]->GetSlicer(2)->Render();
+ mSlicerManagers[i]->GetSlicer(3)->Render();
}
}
//------------------------------------------------------------------------------
//------------------------------------------------------------------------------
//------------------------------------------------------------------------------
+//this actually returns the SlicerManager index!
int vvMainWindow::GetSlicerIndexFromItem(QTreeWidgetItem* item)
{
QString id = item->data(COLUMN_IMAGE_NAME,Qt::UserRole).toString();
for (int i = 0; i < DataTree->topLevelItemCount(); i++) {
mSlicerManagers[i]->SetInteractorStyleNavigator(j,style);
- //select the image only if previous are not selected
+ //select the image only if previous are not selected
if (DataTree->topLevelItem(i)->data(j+1,Qt::CheckStateRole).toInt() > 1) {
mSlicerManagers[i]->UpdateSlicer(j,1);
- AlreadySelected = true;
+ AlreadySelected = true;
} else if (i == DataTree->topLevelItemCount()-1 && !AlreadySelected) {
if (DataTree->selectedItems().size() == 0)
- DataTree->topLevelItem(i)->setSelected(1);
+ DataTree->topLevelItem(i)->setSelected(1); //RB: crash here when loading an image...
DataTree->topLevelItem(i)->setData(j+1,Qt::CheckStateRole,2);
mSlicerManagers[i]->UpdateSlicer(j,1);
DisplaySliders(i,j);
//------------------------------------------------------------------------------
void vvMainWindow::DisplaySliders(int slicer, int window)
{
+ if(!mSlicerManagers[slicer]->GetSlicer(window)->GetRenderer()->GetDraw())
+ return;
+
int range[2];
mSlicerManagers[slicer]->GetSlicer(window)->GetSliceRange(range);
int position = mSlicerManagers[slicer]->GetSlicer(window)->GetSlice();
-
- int tRange[2];
- tRange[0] = 0;
- tRange[1] = mSlicerManagers[slicer]->GetSlicer(window)->GetTMax();
- int tPosition = mSlicerManagers[slicer]->GetSlicer(window)->GetTSlice();
- bool showHorizontal = false;
- bool showVertical = false;
- if (mSlicerManagers[slicer]->GetSlicer(window)->GetImage()->GetNumberOfDimensions() > 3
- || (mSlicerManagers[slicer]->GetSlicer(window)->GetImage()->GetNumberOfDimensions() > 2
- && mSlicerManagers[slicer]->GetType() != vvImageReader::IMAGEWITHTIME
- && mSlicerManagers[slicer]->GetType() != vvImageReader::MERGEDWITHTIME))
- showVertical = true;
- if (mSlicerManagers[slicer]->GetSlicer(window)->GetImage()->GetNumberOfDimensions() > 3
- || mSlicerManagers[slicer]->GetType() == vvImageReader::IMAGEWITHTIME
- || mSlicerManagers[slicer]->GetType() == vvImageReader::MERGEDWITHTIME)
- showHorizontal = true;
-
- if (showVertical)
+ if (range[1]>0)
verticalSliders[window]->show();
else
verticalSliders[window]->hide();
verticalSliders[window]->setRange(range[0],range[1]);
verticalSliders[window]->setValue(position);
- if (showHorizontal)
+ int tRange[2];
+ tRange[0] = 0;
+ tRange[1] = mSlicerManagers[slicer]->GetSlicer(window)->GetTMax();
+ if (tRange[1]>0)
horizontalSliders[window]->show();
else
horizontalSliders[window]->hide();
horizontalSliders[window]->setRange(tRange[0],tRange[1]);
+ int tPosition = mSlicerManagers[slicer]->GetSlicer(window)->GetMaxCurrentTSlice();
horizontalSliders[window]->setValue(tPosition);
}
//------------------------------------------------------------------------------
overlay_index++;
if (DataTree->topLevelItem(index)->child(child) == item) break;
}
+ if (overlay_type=="fusionSequence") {
+ //removing the overlay sequence in a fusion sequence visualization mode
+ //TODO: remove the synchronization (transform matrices, etc...)
+
+ //=> unlink and untie the slicer managers
+ mSlicerManagers[index]->SetFusionSequenceInvolvmentCode(-1);
+ mSlicerManagers[mSlicerManagers[index]->GetFusionSequenceIndexOfLinkedManager()]->SetFusionSequenceInvolvmentCode(-1);
+ RemoveLink(mSlicerManagers[index]->GetId().c_str(), mSlicerManagers[mSlicerManagers[index]->GetFusionSequenceIndexOfLinkedManager()]->GetId().c_str());
+
+ }
mSlicerManagers[index]->RemoveActor(overlay_type, overlay_index-1);
mSlicerManagers[index]->SetColorMap(0);
DataTree->topLevelItem(index)->takeChild(DataTree->topLevelItem(index)->indexOfChild(item));
}
linkPanel->removeImage(index);
mSlicerManagers[index]->RemoveActors();
+
+ //if the slicer manager was involved in a fusion sequence visualization...
+ if ( item->data(1,Qt::UserRole).toString().toStdString() == "fusionSequence" ) {
+ //TODO
+ //make sure both SlicerManager exit the FusionSequence visualization mode
+ //disable the temporal and spatial sync? make sure we reset the spatial transforms to their initial states...
+ mSlicerManagers[index]->SetFusionSequenceInvolvmentCode(-1);
+ mSlicerManagers[mSlicerManagers[index]->GetFusionSequenceIndexOfLinkedManager()]->SetFusionSequenceInvolvmentCode(-1);
+ }
+
+ //remove the slicer manager
delete mSlicerManagers[index];
mSlicerManagers.erase(Manageriter);
int index = GetSlicerIndexFromItem(item);
QApplication::setOverrideCursor(QCursor(Qt::WaitCursor));
QString role=item->data(1,Qt::UserRole).toString();
- if ( role == "vector"){
+ if ( role == "vector") {
mSlicerManagers[index]->ReloadVF();
}
- else if (role == "overlay"){
+ else if (role == "overlay") {
mSlicerManagers[index]->ReloadOverlay();
}
- else if (role == "fusion"){
+ else if (role == "fusion") {
mSlicerManagers[index]->ReloadFusion();
}
- else{
+ else if (role == "fusionSequence") {
+ //both versions of the secondary sequence must be updated.
+ mSlicerManagers[index]->ReloadFusionSequence();
+ mSlicerManagers[mSlicerManagers[index]->GetFusionSequenceIndexOfLinkedManager()]->Reload();
+ }
+ else {
mSlicerManagers[index]->Reload();
+ //if we update the secondary sequence, then the overlay of the main sequence should also be updated
+ if (mSlicerManagers[index]->IsSecondarySequenceOfFusionSequence()) mSlicerManagers[mSlicerManagers[index]->GetFusionSequenceIndexOfLinkedManager()]->ReloadFusionSequence();
}
// Update view and info
ImageInfoChanged();
else
overlayPanel->getOverlayProperty(-1,0,0.,0.);
- // Fusion image
- if (mSlicerManagers[index]->GetSlicer(0)->GetFusion())
- overlayPanel->getFusionProperty(mSlicerManagers[index]->GetFusionOpacity(),
- mSlicerManagers[index]->GetFusionThresholdOpacity(),
- mSlicerManagers[index]->GetFusionColorMap(),
- mSlicerManagers[index]->GetFusionWindow(),
- mSlicerManagers[index]->GetFusionLevel());
+ // Fusion & SequenceFusion image
+ if (mSlicerManagers[index]->GetSlicer(0)->GetFusion()) {
+ overlayPanel->getFusionProperty(mSlicerManagers[index]->GetFusionOpacity(),
+ mSlicerManagers[index]->GetFusionThresholdOpacity(),
+ mSlicerManagers[index]->GetFusionColorMap(),
+ mSlicerManagers[index]->GetFusionWindow(),
+ mSlicerManagers[index]->GetFusionLevel());
+ if (mSlicerManagers[index]->IsMainSequenceOfFusionSequence()) {
+ overlayPanel->getFusionSequenceProperty(mSlicerManagers[index]->GetFusionSequenceFrameIndex(),
+ mSlicerManagers[index]->GetFusionSequenceSpatialSyncFlag(),
+ mSlicerManagers[index]->GetFusionSequenceNbFrames(),
+ mSlicerManagers[index]->GetFusionSequenceTemporalSyncFlag());
+ }
+ }
+ else if ( mSlicerManagers[index]->IsSecondarySequenceOfFusionSequence() ) {
+ //if the image is involved in a fusion sequence, preserve the overlay panel!
+ int ind = mSlicerManagers[index]->GetFusionSequenceIndexOfLinkedManager();
+ overlayPanel->getFusionProperty(mSlicerManagers[ind]->GetFusionOpacity(),
+ mSlicerManagers[ind]->GetFusionThresholdOpacity(),
+ mSlicerManagers[ind]->GetFusionColorMap(),
+ mSlicerManagers[ind]->GetFusionWindow(),
+ mSlicerManagers[ind]->GetFusionLevel());
+ overlayPanel->getFusionSequenceProperty(mSlicerManagers[ind]->GetFusionSequenceFrameIndex(),
+ mSlicerManagers[ind]->GetFusionSequenceSpatialSyncFlag(),
+ mSlicerManagers[ind]->GetFusionSequenceNbFrames(),
+ mSlicerManagers[ind]->GetFusionSequenceTemporalSyncFlag());
+ }
else
- overlayPanel->getFusionProperty(-1, -1, -1, -1, -1);
+ {
+ overlayPanel->getFusionProperty(-1, -1, -1, -1, -1);
+ overlayPanel->getFusionSequenceProperty(-1, false, 0, false);
+ }
}
//------------------------------------------------------------------------------
}
//------------------------------------------------------------------------------
+//------------------------------------------------------------------------------
+void vvMainWindow::UpdateSlicingPreset()
+{
+ if (DataTree->selectedItems().size()) {
+ int index = GetSlicerIndexFromItem(DataTree->selectedItems()[0]);
+ mSlicerManagers[index]->SetSlicingPreset(vvSlicerManager::SlicingPresetType(slicingPresetComboBox->currentIndex()));
+ }
+}
+//------------------------------------------------------------------------------
+
//------------------------------------------------------------------------------
void vvMainWindow::UpdateColorMap()
{
//------------------------------------------------------------------------------
//------------------------------------------------------------------------------
-void vvMainWindow::UpdateLinkManager(std::string id, int slicer, double x, double y, double z, int temps)
+void vvMainWindow::ApplyWindowToSetOfImages(double window, unsigned int indexMin, unsigned int indexMax)
{
- for (unsigned int i = 0; i < mSlicerManagers.size(); i++) {
- if (mSlicerManagers[i]->GetId() == id) {
- //mSlicerManagers[i]->SetTSlice(temps);
- mSlicerManagers[i]->GetSlicer(slicer)->SetCurrentPosition(x,y,z,temps);
- mSlicerManagers[i]->UpdateViews(0,slicer);
- break;
- }
+ for (unsigned int i = indexMin; i <= indexMax && i < mSlicerManagers.size(); i++) {
+ if (mSlicerManagers[i] == NULL)
+ continue;
+ mSlicerManagers[i]->SetColorWindow(window);
+ mSlicerManagers[i]->SetPreset(6);
+ mSlicerManagers[i]->Render();
}
}
//------------------------------------------------------------------------------
+//------------------------------------------------------------------------------
+void vvMainWindow::ApplyLevelToSetOfImages(double level, unsigned int indexMin, unsigned int indexMax)
+{
+ for (unsigned int i = indexMin; i <= indexMax && i < mSlicerManagers.size(); i++) {
+ if (mSlicerManagers[i] == NULL)
+ continue;
+ mSlicerManagers[i]->SetColorLevel(level);
+ mSlicerManagers[i]->SetPreset(6);
+ mSlicerManagers[i]->Render();
+ }
+}
+//------------------------------------------------------------------------------
+
+//------------------------------------------------------------------------------
+void vvMainWindow::UpdateLinkManager(std::string id, int slicer, double x, double y, double z, int temps)
+{
+ for (unsigned int i = 0; i < mSlicerManagers.size(); i++) {
+ if (mSlicerManagers[i]->GetId() == id) {
+ mSlicerManagers[i]->GetSlicer(slicer)->SetCurrentPosition(x,y,z,temps);
+ mSlicerManagers[i]->UpdateViews(0,slicer);
+ break;
+ }
+ }
+}
+//------------------------------------------------------------------------------
+
//------------------------------------------------------------------------------
void vvMainWindow::UpdateLinkedNavigation(std::string id, vvSlicerManager * sm, vvSlicer* refSlicer)
{
QString Extensions = EXTENSIONS;
Extensions += ";;All Files (*)";
- QString file = QFileDialog::getOpenFileName(this,tr("Load Overlay image"),mInputPathName,Extensions);
- if (!file.isEmpty())
- AddOverlayImage(index,file);
+ QStringList files = QFileDialog::getOpenFileNames(this,tr("Load Overlay image"),mInputPathName,Extensions);
+ if (files.isEmpty())
+ return;
+
+ std::vector<std::string> vecFileNames;
+ for (int i = 0; i < files.size(); i++) {
+ vecFileNames.push_back(files[i].toStdString());
+ }
+ AddOverlayImage(index,vecFileNames,vvImageReader::IMAGE);
}
//------------------------------------------------------------------------------
//------------------------------------------------------------------------------
-void vvMainWindow::AddOverlayImage(int index, QString file)
+void vvMainWindow::AddOverlayImage(int index, std::vector<std::string> fileNames, vvImageReader::LoadedImageType type)
{
+ QString file(fileNames[0].c_str());
if (QFile::exists(file))
{
mInputPathName = itksys::SystemTools::GetFilenamePath(file.toStdString()).c_str();
itk::ImageIOBase::Pointer reader = itk::ImageIOFactory::CreateImageIO(
file.toStdString().c_str(), itk::ImageIOFactory::ReadMode);
- reader->SetFileName(file.toStdString().c_str());
+ reader->SetFileName(fileNames[0].c_str());
reader->ReadImageInformation();
std::string component = reader->GetComponentTypeAsString(reader->GetComponentType());
int dimension = reader->GetNumberOfDimensions();
qApp->processEvents();
std::string filename = itksys::SystemTools::GetFilenameWithoutExtension(file.toStdString()).c_str();
- if (mSlicerManagers[index]->SetOverlay(file.toStdString(),dimension, component)) {
+ if (mSlicerManagers[index]->SetOverlay(fileNames,dimension, component,type)) {
//create an item in the tree with good settings
QTreeWidgetItem *item = new QTreeWidgetItem();
item->setData(0,Qt::UserRole,file.toStdString().c_str());
qApp->processEvents();
ImageInfoChanged();
QApplication::restoreOverrideCursor();
+
+ // Update the display to update, e.g., the sliders
+ for(int i=0; i<4; i++)
+ DisplaySliders(index, i);
} else {
QApplication::restoreOverrideCursor();
QString error = "Cannot import the new image.\n";
//check if one fusion image is added
for (int child = 0; child < DataTree->topLevelItem(index)->childCount(); child++)
- if (DataTree->topLevelItem(index)->child(child)->data(1,Qt::UserRole).toString() == "fusion") {
+ if ( (DataTree->topLevelItem(index)->child(child)->data(1,Qt::UserRole).toString() == "fusion") ||
+ (DataTree->topLevelItem(index)->child(child)->data(1,Qt::UserRole).toString() == "fusionSequence") ) {
QString error = "Cannot add more than one fusion image\n";
error += "Please remove first ";
error += DataTree->topLevelItem(index)->child(child)->data(COLUMN_IMAGE_NAME,Qt::DisplayRole).toString();
QString Extensions = "Images ( *.mhd)";
Extensions += ";;Images ( *.mha)";
- Extensions += ";;Images ( *.vf)";
+ Extensions += ";;VF Images ( *.vf)";
+ Extensions += ";;nii Images ( *.nii)";
+ Extensions += ";;nrrd Images ( *.nrrd)";
+ Extensions += ";;nhdr Images ( *.nhdr)";
+ Extensions += ";;All Files (*)";
QString file = QFileDialog::getOpenFileName(this,tr("Load deformation field"),mInputPathName,Extensions);
if (!file.isEmpty())
AddField(file,index);
mSlicerManagers[index]->SetFusionLevel(level);
mSlicerManagers[index]->SetFusionShowLegend(showLegend);
mSlicerManagers[index]->SetColorMap(0);
- mSlicerManagers[index]->Render();
+ mSlicerManagers[index]->Render();
}
}
//------------------------------------------------------------------------------
+
+//------------------------------------------------------------------------------
+void vvMainWindow::SelectFusionSequence()
+{
+ //get the index of the slicer manager of the main sequence (CT)
+ int index = GetSlicerIndexFromItem(DataTree->selectedItems()[0]);
+ //check if one overlay image is already associated
+ for (int child = 0; child < DataTree->topLevelItem(index)->childCount(); child++)
+ if ( (DataTree->topLevelItem(index)->child(child)->data(1,Qt::UserRole).toString() == "fusion") ||
+ (DataTree->topLevelItem(index)->child(child)->data(1,Qt::UserRole).toString() == "fusionSequence") ) {
+ QString error = "Cannot add more than one compared image\n";
+ error += "Please remove first ";
+ error += DataTree->topLevelItem(index)->child(child)->data(COLUMN_IMAGE_NAME,Qt::DisplayRole).toString();
+ QMessageBox::information(this,tr("Problem adding compared image !"),error);
+ return;
+ }
+
+ QString Extensions = EXTENSIONS;
+ Extensions += ";;All Files (*)";
+ QStringList files = QFileDialog::getOpenFileNames(this,tr("Load Overlay image sequence"),mInputPathName,Extensions);
+ if (files.isEmpty())
+ return;
+
+ std::vector<std::string> vecFileNames;
+ for (int i = 0; i < files.size(); i++) {
+ vecFileNames.push_back(files[i].toStdString());
+ }
+
+ //associate the secondary sequence (US) to the main one
+ AddFusionSequence(index,vecFileNames,vvImageReader::MERGEDWITHTIME);
+}
+//------------------------------------------------------------------------------
+
+
+//------------------------------------------------------------------------------
+void vvMainWindow::SelectFusionSequenceTemporalSignal() {
+
+ //make sure the index is right?
+ //in the end, I should attach the temporal data to the right sequence!
+ int index = GetSlicerIndexFromItem(DataTree->selectedItems()[0]);
+ //in case the other sequence got selected, make sure we select the primary sequence
+ if ( (!mSlicerManagers[index]->GetSlicer(0)->GetFusion()) && mSlicerManagers[index]->GetFusionSequenceIndexOfLinkedManager()>=0 ) {
+ index = mSlicerManagers[index]->GetFusionSequenceIndexOfLinkedManager();
+ }
+
+ //open a dialog box to find a file
+ QString Extensions = EXTENSIONS;
+ Extensions += ";;All Files (*)";
+ QString fileName = QFileDialog::getOpenFileName(this,tr("Load respiratory signal for fused sequence"),mInputPathName,Extensions);
+ if (fileName.isNull())
+ return;
+
+ //read it as a vector of values
+ std::vector<double> signal;
+ //...TODO, look for itk functions that can do that... vnl in the worst case.
+ signal.push_back(1);signal.push_back(2);
+
+ //TODO: instead: if the loaded signal is longer, just crop it...
+ //this allows loading only the first few frames when testing.
+ //->maybe raise a message that this behavior may be unsafe...
+
+ //if compatible with the fused image sequence (number of images = number of entries), enable the temporalSync
+ if ( signal.size() >= mSlicerManagers[index]->GetFusionSequenceNbFrames()) {
+ //for convenience, associate this sequence to both the current slicer manager, and to the linked one
+ mSlicerManagers[index]->SetFusionSequenceTemporalSignal(signal);
+ mSlicerManagers[ mSlicerManagers[index]->GetFusionSequenceIndexOfLinkedManager() ]->SetFusionSequenceTemporalSignal(signal);
+ overlayPanel->enableFusionSequenceTemporalSync();
+ QMessageBox::information(this,tr("Adding signal"),"would add the signal from file: "+ fileName);
+ }
+ else {//else, send a message to signal the failure...
+ QString error = "The provided signal doesn't have the same duration as the sequence\n";
+ error += "Ignoring file: " + fileName;
+ QMessageBox::information(this,tr("Problem adding signal!"),error);
+ return;
+ }
+
+}
+//------------------------------------------------------------------------------
+
+
+//------------------------------------------------------------------------------
+//when this function is called index is the slicer manager index corresponding to the main sequence (CT)
+//the files behind fileNames points to the data for the secondary sequence
+void vvMainWindow::AddFusionSequence(int index, std::vector<std::string> fileNames, vvImageReader::LoadedImageType type)
+{
+ QString file(fileNames[0].c_str());
+ if (QFile::exists(file))
+ {
+ mInputPathName = itksys::SystemTools::GetFilenamePath(file.toStdString()).c_str();
+ itk::ImageIOBase::Pointer reader = itk::ImageIOFactory::CreateImageIO(
+ file.toStdString().c_str(), itk::ImageIOFactory::ReadMode);
+ reader->SetFileName(fileNames[0].c_str());
+ reader->ReadImageInformation();
+ std::string component = reader->GetComponentTypeAsString(reader->GetComponentType());
+ int dimension = reader->GetNumberOfDimensions();
+ QApplication::setOverrideCursor(QCursor(Qt::WaitCursor));
+ vvProgressDialog progress("Opening " + file.toStdString());
+ qApp->processEvents();
+
+ std::string filename = itksys::SystemTools::GetFilenameWithoutExtension(file.toStdString()).c_str();
+
+ if (mSlicerManagers[index]->SetFusionSequence(fileNames,dimension, component,type)) {
+ //create an item in the tree with good settings
+ QTreeWidgetItem *item = new QTreeWidgetItem();
+ item->setData(0,Qt::UserRole,file.toStdString().c_str());
+ item->setData(1,Qt::UserRole,tr("fusionSequence"));
+
+ QFileInfo fileinfo(file); //Do not show the path
+ item->setData(COLUMN_IMAGE_NAME,Qt::DisplayRole,fileinfo.fileName());
+ item->setToolTip(COLUMN_IMAGE_NAME, mSlicerManagers[index]->GetListOfAbsoluteFilePathInOneString("fusionSequence").c_str());
+ qApp->processEvents();
+ for (int j = 1; j <= 4; j++) {
+ item->setData(j,Qt::CheckStateRole,DataTree->topLevelItem(index)->data(j,Qt::CheckStateRole));
+ }
+
+ //Create the buttons for reload and close
+ qApp->processEvents();
+ QTreePushButton* cButton = new QTreePushButton;
+ cButton->setItem(item);
+ cButton->setColumn(COLUMN_CLOSE_IMAGE);
+ cButton->setToolTip(tr("close image"));
+ cButton->setIcon(QIcon(QString::fromUtf8(":/common/icons/exit.png")));
+ connect(cButton,SIGNAL(clickedInto(QTreeWidgetItem*, int)),
+ this,SLOT(CloseImage(QTreeWidgetItem*, int)));
+
+ QTreePushButton* rButton = new QTreePushButton;
+ rButton->setItem(item);
+ rButton->setColumn(COLUMN_RELOAD_IMAGE);
+ rButton->setToolTip(tr("reload image"));
+ rButton->setIcon(QIcon(QString::fromUtf8(":/common/icons/rotateright.png")));
+ connect(rButton,SIGNAL(clickedInto(QTreeWidgetItem*, int)),
+ this,SLOT(ReloadImage(QTreeWidgetItem*, int)));
+
+ DataTree->topLevelItem(index)->setExpanded(1);
+ DataTree->topLevelItem(index)->addChild(item);
+ DataTree->setItemWidget(item, COLUMN_CLOSE_IMAGE, cButton);
+ DataTree->setItemWidget(item, COLUMN_RELOAD_IMAGE, rButton);
+
+ //store the original transform matrix
+ int indexParent = GetSlicerIndexFromItem( DataTree->topLevelItem(index) );
+ mSlicerManagers[indexParent]->SetFusionSequenceMainTransformMatrix( mSlicerManagers[indexParent]->GetSlicer(0)->GetImage()->GetTransform()[0]->GetMatrix() );
+
+ //set the id of the image
+ QString id = DataTree->topLevelItem(index)->data(COLUMN_IMAGE_NAME,Qt::UserRole).toString();
+ item->setData(COLUMN_IMAGE_NAME,Qt::UserRole,id.toStdString().c_str());
+ UpdateTree();
+ qApp->processEvents();
+
+ ImageInfoChanged();
+
+ QApplication::restoreOverrideCursor();
+ // Update the display to update, e.g., the sliders
+ for(int i=0; i<4; i++)
+ DisplaySliders(index, i);
+
+
+ //This loads the secondary sequence (US) as an independent sequence
+ LoadImages(fileNames, type);
+ //reset the transforms to identiy
+ for (unsigned i=0 ; i<mSlicerManagers.back()->GetImage()->GetTransform().size() ; i++) {
+ mSlicerManagers.back()->GetImage()->GetTransform()[i]->Identity();
+ mSlicerManagers.back()->GetImage()->GetTransform()[i]->Update();
+ }
+
+ //automatically link both images...
+ AddLink(mSlicerManagers[indexParent]->GetId().c_str(), mSlicerManagers.back()->GetId().c_str(), false);
+
+ //tie the main and secondary sequences by raising flags and informing each another of their respective SlicerManager indices
+ mSlicerManagers[indexParent]->SetFusionSequenceIndexOfLinkedManager(mSlicerManagers.size()-1);
+ mSlicerManagers[indexParent]->SetFusionSequenceInvolvmentCode(0); //main sequence
+ mSlicerManagers.back()->SetFusionSequenceIndexOfLinkedManager(indexParent);
+ mSlicerManagers.back()->SetFusionSequenceInvolvmentCode(1); //secondary sequence
+
+ } else {
+ QApplication::restoreOverrideCursor();
+ QString error = "Cannot import the new image.\n";
+ error += mSlicerManagers[index]->GetLastError().c_str();
+ QMessageBox::information(this,tr("Problem reading image !"),error);
+ }
+ WindowLevelChanged();
+ }
+ else {
+ QMessageBox::information(this,tr("Problem reading fusion sequence !"),"File doesn't exist!");
+ return;
+ }
+
+}
+//------------------------------------------------------------------------------
+
+
+//------------------------------------------------------------------------------
+//fusionSequenceFrameIndex and fusionSequenceNbFrames are relative to the secondary sequence (US)
+void vvMainWindow::SetFusionSequenceProperty(int fusionSequenceFrameIndex, bool spatialSyncFlag, unsigned int fusionSequenceNbFrames, bool temporalSyncFlag)
+{
+ int index = GetSlicerIndexFromItem(DataTree->selectedItems()[0]);
+
+ //check if the focus moved to the linked sequence, and in this case, select the master sequence instead
+ if (!mSlicerManagers[index]->IsMainSequenceOfFusionSequence()) {
+ index = mSlicerManagers[index]->GetFusionSequenceIndexOfLinkedManager();
+ }
+
+ int secondaryIndex = mSlicerManagers[index]->GetFusionSequenceIndexOfLinkedManager();
+ if ( (!mSlicerManagers[index]->IsMainSequenceOfFusionSequence()) ||
+ (!mSlicerManagers[secondaryIndex]->IsSecondarySequenceOfFusionSequence()) )
+ {return;} //this should never happen, raise an exception?
+
+ if (mSlicerManagers[index]->GetSlicer(0)->GetFusion()) {
+ int indexParent = GetSlicerIndexFromItem( DataTree->topLevelItem(index) );
+//check whether this really makes sense to look at 'parentIndex'...
+std::cout<<"index = "<<index<<", indexParent = "<< indexParent<<std::endl;
+
+ //if the spatialSync button is unchecked, then reposition the parent sequence (CT) in its original coordinate frame
+ if ( (!spatialSyncFlag) && (mSlicerManagers[index]->GetFusionSequenceSpatialSyncFlag()) ) {
+ for ( unsigned i=0 ; i<mSlicerManagers[indexParent]->GetSlicer(0)->GetImage()->GetTransform().size() ; i++ ) {
+ mSlicerManagers[indexParent]->GetSlicer(0)->GetImage()->GetTransform()[i]->SetMatrix( mSlicerManagers[index]->GetFusionSequenceMainTransformMatrix() );
+ mSlicerManagers[indexParent]->GetSlicer(0)->GetImage()->GetTransform()[i]->Update();
+ }
+
+ for (int i=0; i<mSlicerManagers[indexParent]->GetNumberOfSlicers(); i++) {
+ mSlicerManagers[indexParent]->GetSlicer(i)->ForceUpdateDisplayExtent();
+ mSlicerManagers[indexParent]->GetSlicer(i)->Render();
+ }
+ }
+
+
+ //update the property values in the slicer manager
+ mSlicerManagers[index]->SetFusionSequenceLength(fusionSequenceNbFrames);
+ mSlicerManagers[index]->SetFusionSequenceSpatialSyncFlag(spatialSyncFlag);
+ mSlicerManagers[index]->SetFusionSequenceSpatialSyncFlag(temporalSyncFlag);
+ mSlicerManagers[index]->SetFusionSequenceFrameIndex(fusionSequenceFrameIndex);
+
+ //show the right frame of the US sequence
+ mSlicerManagers[index]->SetFusionSequenceTSlice(fusionSequenceFrameIndex);
+ //update the TSlice of the linked sequence if possible
+ mSlicerManagers[secondaryIndex]->SetTSlice(fusionSequenceFrameIndex, true);
+
+ //update the horizontal sliders of the main window
+ overlayPanel->updateFusionSequenceSliderValueFromWindow(fusionSequenceFrameIndex, false);
+
+ if (spatialSyncFlag) { //reslice the CT
+
+ if (temporalSyncFlag) { //do the temporal synchronisation
+ //TODO: add the temporal synchronisation stuff
+ //if the button is checked, get the phase of the requested US frame from the available signal
+ //and select the corresponding one in the CT. (check the one just before, and the one just after, and select the closest)
+
+ //TODO: do it also the other way around, when modifying the time index related to CT, select a close frame
+ //this should not be done here directly, but the code should be inspired from the one here
+ //->find a good US frame such that when calling this function with this US frame, it produces the expected result
+
+
+ //TODO: select the right CT image to display
+ int mainSequenceFrameIndex=0;
+ //estimate the TSlice to set to the CT
+
+ //and set it!
+ mSlicerManagers[index]->SetTSlice(mainSequenceFrameIndex, false);
+ }
+
+
+ //Set the transform matrix of the parent sequence (typically CT / 4DCT)
+ vtkSmartPointer<vtkMatrix4x4> tmpMat = vtkSmartPointer<vtkMatrix4x4>::New();
+ vtkMatrix4x4::Invert( mSlicerManagers[index]->GetFusionSequenceInitialTransformMatrixAtFrame(fusionSequenceFrameIndex), tmpMat );
+ for ( unsigned i=0 ; i<mSlicerManagers[indexParent]->GetSlicer(0)->GetImage()->GetTransform().size() ; i++ ) {
+ mSlicerManagers[indexParent]->GetSlicer(0)->GetImage()->GetTransform()[i]->SetMatrix( mSlicerManagers[index]->GetFusionSequenceMainTransformMatrix() );
+ mSlicerManagers[indexParent]->GetSlicer(0)->GetImage()->GetTransform()[i]->PreMultiply();
+ mSlicerManagers[indexParent]->GetSlicer(0)->GetImage()->GetTransform()[i]->Concatenate( tmpMat );
+ mSlicerManagers[indexParent]->GetSlicer(0)->GetImage()->GetTransform()[i]->Update();
+ }
+
+ for (int i=0; i<mSlicerManagers[indexParent]->GetNumberOfSlicers(); i++) {
+ mSlicerManagers[indexParent]->GetSlicer(i)->ForceUpdateDisplayExtent();
+ mSlicerManagers[indexParent]->GetSlicer(i)->Render();
+ }
+
+ }
+
+ }
+}
+//------------------------------------------------------------------------------
+
+
//------------------------------------------------------------------------------
void vvMainWindow::SaveAs()
{
bool bId = true;
for(int i=0; i<4; i++)
for(int j=0; j<4; j++) {
- double elt = mSlicerManagers[index]->GetImage()->GetTransform()->GetMatrix()->GetElement(i,j);
+ // TODO SR and BP: check on the list of transforms and not the first only
+ double elt = mSlicerManagers[index]->GetImage()->GetTransform()[0]->GetMatrix()->GetElement(i,j);
if(i==j && elt!=1.)
bId = false;
if(i!=j && elt!=0.)
}
//------------------------------------------------------------------------------
-void vvMainWindow::AddLink(QString image1,QString image2)
+void vvMainWindow::AddLink(QString image1,QString image2,bool fromPanel)
{
+ if (!fromPanel) {
+ // delegate to linkPanel if call came from elsewhere...
+ linkPanel->addLinkFromIds(image1, image2);
+ return;
+ }
+
unsigned int sm1 = 0;
unsigned int sm2 = 0;
DisplayChanged(item,slicer+1);
}
//------------------------------------------------------------------------------
-
void vvMainWindow::HorizontalSliderMoved(int value,int column, int slicer_index)
{
- for (unsigned int i = 0; i < mSlicerManagers.size(); i++) {
- if (DataTree->topLevelItem(i)->data(column,Qt::CheckStateRole).toInt() > 1) {
- for (int j = 0; j < 4; j++) {
- mSlicerManagers[i]->SetTSliceInSlicer(value,j);
- //if (mSlicerManagers[i]->GetSlicer(j)->GetImageActor()->GetVisibility())
- //UpdateTSlice(j,value);
- }
- mSlicerManagers[i]->GetSlicer(slicer_index)->Render();
- break;
- }
- }
+ for (unsigned int i = 0; i < mSlicerManagers.size(); i++) {
+ if (DataTree->topLevelItem(i)->data(column,Qt::CheckStateRole).toInt() > 1) {
+
+ if (mSlicerManagers[i]->IsInvolvedInFusionSequence()) {
+ //if the slicerManager is involved in a fusionSequence as the secondary sequence, then update the slider position in the overlay panel and everything accordingly
+ if (mSlicerManagers[i]->IsSecondarySequenceOfFusionSequence()) { overlayPanel->updateFusionSequenceSliderValueFromWindow(value, true); }
+ else { //if this is the primary sequence that has been modified
+ if (mSlicerManagers[i]->GetFusionSequenceTemporalSyncFlag()) {
+ //TODO: if temporal sync is active
+ //estimate a corresponding time index for the secondary (US) sequence, and update it accordingly.
+ int estimatedValue=0;
+ overlayPanel->updateFusionSequenceSliderValueFromWindow(estimatedValue, true);
+ }
+ }
+ }
+
+ for (int j = 0; j < 4; j++) {
+ mSlicerManagers[i]->SetTSliceInSlicer(value,j);
+ }
+ mSlicerManagers[i]->GetSlicer(slicer_index)->Render();
+ break;
+ }
+ }
}
//------------------------------------------------------------------------------
//------------------------------------------------------------------------------
void vvMainWindow::UpdateSliceRange(int slicer, int min, int max, int tmin, int tmax)
{
- int position = int((min+max)/2);
+ //int position = int((min+max)/2);
+ int position = mSlicerManagers[mCurrentPickedImageIndex]->GetSlicer(slicer)->GetSlice();
if (slicer == 0) {
- NOVerticalSlider->setValue(position);
NOVerticalSlider->setRange(min,max);
NOHorizontalSlider->setRange(tmin,tmax);
+ NOVerticalSlider->setValue(position);
} else if (slicer == 1) {
- NEVerticalSlider->setValue(position);
NEVerticalSlider->setRange(min,max);
NEHorizontalSlider->setRange(tmin,tmax);
+ NEVerticalSlider->setValue(position);
} else if (slicer == 2) {
- SOVerticalSlider->setValue(position);
SOVerticalSlider->setRange(min,max);
SOHorizontalSlider->setRange(tmin,tmax);
+ SOVerticalSlider->setValue(position);
} else if (slicer == 3) {
- SEVerticalSlider->setValue(position);
SEVerticalSlider->setRange(min,max);
SEHorizontalSlider->setRange(tmin,tmax);
+ SEVerticalSlider->setValue(position);
}
}
//------------------------------------------------------------------------------
vidwriter->SetInput(image);
vidwriter->SetFileName(fileName.toStdString().c_str());
vidwriter->Start();
- vvImage * vvImg = mSlicerManagers[smIndex]->GetImage();
- int nSlice = vvImg->GetVTKImages().size();
- for(int i=0; i<nSlice; i++) {
+ int nSlice = mSlicerManagers[smIndex]->GetSlicer(0)->GetTMax();
+ for(int i=0; i<=nSlice; i++) {
mSlicerManagers[smIndex]->SetNextTSlice(0);
vtkSmartPointer<vtkWindowToImageFilter> w2i = vtkSmartPointer<vtkWindowToImageFilter>::New();
w2i->SetInput(widget->GetRenderWindow());
int image_number=DataTree->topLevelItemCount();
bool has_temporal;
for (int i=0; i<image_number; i++)
- if (mSlicerManagers[i]->GetImage()->GetVTKImages().size() > 1) {
+ if (mSlicerManagers[i]->GetSlicer(0)->GetTMax() > 0) {
has_temporal=true;
break;
}
///Only play one slicer per SM, and only if the SM is being displayed
for (int i=0; i<image_number; i++)
for (int j=0; j<4; j++)
- if (mSlicerManagers[i]->GetImage()->GetVTKImages().size() > 1 &&
+ if (mSlicerManagers[i]->GetSlicer(0)->GetTMax() > 0 &&
DataTree->topLevelItem(i)->data(j+1,Qt::CheckStateRole).toInt() > 0) {
mSlicerManagers[i]->SetNextTSlice(j);
break;
//------------------------------------------------------------------------------
void vvMainWindow::UpdateRenderWindows()
{
+ for (unsigned int i = 0; i < mSlicerManagers.size(); i++) {
+ mSlicerManagers[i]->GetSlicer(0)->UpdateLandmarks();
+ mSlicerManagers[i]->GetSlicer(1)->UpdateLandmarks();
+ mSlicerManagers[i]->GetSlicer(2)->UpdateLandmarks();
+ mSlicerManagers[i]->GetSlicer(3)->UpdateLandmarks();
+ }
if (NOViewWidget->GetRenderWindow()) NOViewWidget->GetRenderWindow()->Render();
if (NEViewWidget->GetRenderWindow()) NEViewWidget->GetRenderWindow()->Render();
if (SOViewWidget->GetRenderWindow()) SOViewWidget->GetRenderWindow()->Render();
DataTree->setItemWidget(item, COLUMN_RELOAD_IMAGE, rButton);
//set the id of the image
- QString id = slicer_manager->GetFileName().c_str() + QString::number(mSlicerManagers.size()-1);
+ QString id = QDir::current().absoluteFilePath(slicer_manager->GetFileName().c_str()) + QString::number(mSlicerManagers.size()-1);
item->setData(COLUMN_IMAGE_NAME,Qt::UserRole,id.toStdString().c_str());
mSlicerManagers.back()->SetId(id.toStdString());
connect(mSlicerManagers.back(), SIGNAL(UpdateOverlay(int, double, double)),
this, SLOT(OverlayChanged(int,double,double)));
connect(mSlicerManagers.back(), SIGNAL(UpdateFusion(int, double)),
- this, SLOT(FusionChanged(int,double)));
+ this, SLOT(FusionChanged(int,double)));
+ //connect(mSlicerManagers.back(), SIGNAL(UpdateFusionSequence(int, bool, unsigned int)),
+ // this, SLOT(FusionSequenceChanged(int, bool, unsigned int)));
connect(mSlicerManagers.back(), SIGNAL(WindowLevelChanged()),
this,SLOT(WindowLevelChanged()));
connect(mSlicerManagers.back(), SIGNAL(UpdateSlice(int,int)),
this,SLOT(UpdateSlice(int,int)));
connect(mSlicerManagers.back(), SIGNAL(UpdateTSlice(int, int)),
this,SLOT(UpdateTSlice(int, int)));
+ connect(mSlicerManagers.back(), SIGNAL(UpdateTSlice(int, int)),
+ this,SLOT(ImageInfoChanged()));
connect(mSlicerManagers.back(), SIGNAL(UpdateSliceRange(int,int,int,int,int)),
this,SLOT(UpdateSliceRange(int,int,int,int,int)));
connect(mSlicerManagers.back(), SIGNAL(UpdateLinkManager(std::string,int,double,double,double,int)),
connect(mSlicerManagers.back(), SIGNAL(ChangeImageWithIndexOffset(vvSlicerManager*,int,int)),
this,SLOT(ChangeImageWithIndexOffset(vvSlicerManager*,int,int)));
connect(mSlicerManagers.back(), SIGNAL(LandmarkAdded()),landmarksPanel,SLOT(AddPoint()));
+
+
UpdateTree();
qApp->processEvents();
InitSlicers();
git://git.creatis.insa-lyon.fr / clitk.git / blobdiff