vtkCxxRevisionMacro(vvSlicer, "DummyRevision");
vtkStandardNewMacro(vvSlicer);
-
+static void copyExtent(int* in, int* to){
+ for(int i=0; i<6; ++i) to[i]=in[i];
+}
//------------------------------------------------------------------------------
vvSlicer::vvSlicer()
{
this->UnInstallPipeline();
mImage = NULL;
+ mReducedExtent = new int[6];
mCurrentTSlice = 0;
mUseReducedExtent = false;
mVFColor[1] = 1;
mVFColor[2] = 0;
- std::string text = "F1 = sagital; F2 = coronal; F3 = axial\n";
- text += "F5 = horizontal flip; F6 = vertical flip\n\n";
- text += "0,1,2,3,4,5 : preset windowing\n";
- text += "6,7,8,9 : preset colormap\n";
- text += "z : local windowing\n";
- text += "r : reset view\n";
- text += "l : reload image\n";
- text += "f : fly to mouse position\n";
- text += "g : go to cross hair position\n\n";
- text += "Up,down : change slice\n";
- text += "Left,right : change tenporal slice\n\n";
- text += "Scrollbar (or w/x) : zoom in/out\n";
- text += "left button : synchronize all views\n";
- text += "middle button : grab image\n";
- text += "right button : change windowing\n";
-
crossCursor = vtkSmartPointer<vtkCursor2D>::New();
crossCursor->AllOff();
crossCursor->AxesOn();
this->WindowLevel = vvImageMapToWLColors::New();
this->InstallPipeline();
+
+ mLinkOverlayWindowLevel = true;
}
//------------------------------------------------------------------------------
//------------------------------------------------------------------------------
-vtkImageMapToWindowLevelColors* vvSlicer::GetFusionMapper()
+vtkImageMapToColors* vvSlicer::GetFusionMapper()
{
return mFusionMapper.GetPointer();
}
//------------------------------------------------------------------------------
void vvSlicer::SetReducedExtent(int * ext)
{
- mReducedExtent = ext;
+ copyExtent(ext, mReducedExtent);
}
//------------------------------------------------------------------------------
for (std::vector<vvMeshActor*>::iterator i=mSurfaceCutActors.begin();
i!=mSurfaceCutActors.end(); i++)
delete (*i);
+ delete [] mReducedExtent;
}
//------------------------------------------------------------------------------
// Prevent crash when reload -> change slice if outside extent
if (Slice < extent[SliceOrientation*2] || Slice>=extent[SliceOrientation*2+1]) {
- Slice = (extent[SliceOrientation*2+1]-extent[SliceOrientation*2])/2.0;
+ Slice = (extent[SliceOrientation*2+1]+extent[SliceOrientation*2])/2.0;
}
// Make sure that the required part image has been computed
mOverlayActor = vtkSmartPointer<vvBlendImageActor>::New();
mOverlayActor->SetInput(mOverlayMapper->GetOutput());
mOverlayActor->SetPickable(0);
- mOverlayActor->SetVisibility(false);
+ mOverlayActor->SetVisibility(true);
mOverlayActor->SetOpacity(0.5);
}
this->GetRenderer()->AddActor(mOverlayActor);
//Synchronize orientation and slice
- this->SetSliceOrientation(this->SliceOrientation);
+ AdjustResliceToSliceOrientation(mOverlayReslice);
+ this->UpdateDisplayExtent();
this->SetTSlice(mCurrentTSlice);
}
}
mFusionReslice->SetInput(0, mFusion->GetFirstVTKImageData());
if (!mFusionMapper)
- mFusionMapper = vtkSmartPointer<vtkImageMapToWindowLevelColors>::New();
+ mFusionMapper = vtkSmartPointer<vtkImageMapToColors>::New();
+
+ vtkSmartPointer<vtkLookupTable> lut = vtkLookupTable::New();
+ lut->SetRange(0, 1);
+ lut->SetValueRange(0, 1);
+ lut->SetSaturationRange(0, 0);
+ lut->Build();
+ mFusionMapper->SetLookupTable(lut);
mFusionMapper->SetInput(mFusionReslice->GetOutput());
if (!mFusionActor) {
mFusionActor = vtkSmartPointer<vtkImageActor>::New();
mFusionActor->SetInput(mFusionMapper->GetOutput());
mFusionActor->SetPickable(0);
- mFusionActor->SetVisibility(false);
+ mFusionActor->SetVisibility(true);
mFusionActor->SetOpacity(0.7);
this->GetRenderer()->AddActor(mFusionActor);
}
//Synchronize orientation and slice
- this->SetSliceOrientation(this->SliceOrientation);
+ AdjustResliceToSliceOrientation(mFusionReslice);
+ this->UpdateDisplayExtent();
this->SetTSlice(mCurrentTSlice);
}
}
//------------------------------------------------------------------------------
+//------------------------------------------------------------------------------
+bool vvSlicer::GetActorVisibility(const std::string& actor_type, int overlay_index)
+{
+ bool vis = false;
+ if (actor_type == "image") {
+ vis = this->ImageActor->GetVisibility();
+ }
+ else if (actor_type == "vector") {
+ vis = this->mVFActor->GetVisibility();
+ }
+ else if (actor_type == "overlay") {
+ vis = this->mOverlayActor->GetVisibility();
+ }
+ else if (actor_type == "fusion") {
+ vis = this->mFusionActor->GetVisibility();
+ }
+ else if (actor_type == "contour")
+ vis = this->mSurfaceCutActors[overlay_index]->GetActor()->GetVisibility();
+
+ return vis;
+}
+//------------------------------------------------------------------------------
+
//------------------------------------------------------------------------------
void vvSlicer::SetActorVisibility(const std::string& actor_type, int overlay_index ,bool vis)
{
- if (actor_type == "vector") {
+ if (actor_type == "image") {
+ this->ImageActor->SetVisibility(vis);
+ }
+ else if (actor_type == "vector") {
this->mVFActor->SetVisibility(vis);
}
- if (actor_type == "overlay") {
+ else if (actor_type == "overlay") {
this->mOverlayActor->SetVisibility(vis);
}
- if (actor_type == "fusion") {
+ else if (actor_type == "fusion") {
this->mFusionActor->SetVisibility(vis);
}
- if (actor_type == "contour")
+ else if (actor_type == "contour")
this->mSurfaceCutActors[overlay_index]->GetActor()->SetVisibility(vis);
UpdateDisplayExtent();
}
//------------------------------------------------------------------------------
-
//------------------------------------------------------------------------------
void vvSlicer::SetVF(vvImage::Pointer vf)
{
// of the displayed image in the slicing direction.
void vvSlicer::AdjustResliceToSliceOrientation(vtkImageReslice *reslice)
{
- // Reset autocrop
- double origin[3] = {VTK_DOUBLE_MAX, VTK_DOUBLE_MAX, VTK_DOUBLE_MAX};
- double spacing[3] = {VTK_DOUBLE_MAX, VTK_DOUBLE_MAX, VTK_DOUBLE_MAX};
- reslice->SetOutputOrigin(origin);
- reslice->SetOutputSpacing(spacing);
+ // Reset autocrop and update output information
+ reslice->SetOutputOriginToDefault();
+ reslice->SetOutputSpacingToDefault();
reslice->GetOutput()->UpdateInformation();
+
+ // Ge new origin / spacing
+ double origin[3];
+ double spacing[3];
reslice->GetOutput()->GetOrigin(origin);
reslice->GetOutput()->GetSpacing(spacing);
reslice->SetOutputOrigin(origin);
reslice->SetOutputSpacing(spacing);
reslice->UpdateInformation();
+ reslice->GetOutput()->UpdateInformation();
}
//------------------------------------------------------------------------------
//----------------------------------------------------------------------------
-int * vvSlicer::GetExtent()
-{
+int * vvSlicer::GetExtent(){
int *w_ext;
if (mUseReducedExtent) {
w_ext = mReducedExtent;
}
//----------------------------------------------------------------------------
+
//----------------------------------------------------------------------------
void vvSlicer::UpdateDisplayExtent()
{
// Local copy of extent
int w_ext[6];
- for(unsigned int i=0; i<6; i++){
- if (mUseReducedExtent)
- w_ext[i] = mReducedExtent[i];
- else
- w_ext[i] = input->GetWholeExtent()[i];
- }
-
+ copyExtent(GetExtent(), w_ext);
// Set slice value
w_ext[ this->SliceOrientation*2 ] = this->Slice;
w_ext[ this->SliceOrientation*2+1 ] = this->Slice;
// Image actor
this->ImageActor->SetDisplayExtent(w_ext);
- // Position vector
- double position[3] = {0.,0.,0.};
- double positionInc = (Renderer->GetActiveCamera()->GetPosition()[this->SliceOrientation] > this->Slice)?10:-10;
- position[this->SliceOrientation] += positionInc;
-
// Overlay image actor
if (mOverlay && mOverlayActor->GetVisibility()) {
+ AdjustResliceToSliceOrientation(mOverlayReslice);
int overExtent[6];
- mOverlayReslice->GetOutput()->UpdateInformation();
this->ConvertImageToImageDisplayExtent(input, w_ext, mOverlayReslice->GetOutput(), overExtent);
ClipDisplayedExtent(overExtent, mOverlayMapper->GetInput()->GetWholeExtent());
mOverlayActor->SetDisplayExtent( overExtent );
- mOverlayActor->SetPosition(position);
}
- position[this->SliceOrientation] += positionInc;
// Fusion image actor
if (mFusion && mFusionActor->GetVisibility()) {
+ AdjustResliceToSliceOrientation(mFusionReslice);
int fusExtent[6];
- mFusionReslice->GetOutput()->UpdateInformation();
this->ConvertImageToImageDisplayExtent(input, w_ext, mFusionReslice->GetOutput(), fusExtent);
ClipDisplayedExtent(fusExtent, mFusionMapper->GetInput()->GetWholeExtent());
mFusionActor->SetDisplayExtent(fusExtent);
- mFusionActor->SetPosition(position);
}
- position[this->SliceOrientation] += positionInc;
// Vector field actor
+ double* camera = Renderer->GetActiveCamera()->GetPosition();
+ double* image_bounds = ImageActor->GetBounds();
+ double position[3] = {0, 0, 0};
+ position[this->SliceOrientation] = image_bounds[this->SliceOrientation*2];
+
+ //print_vector<double, 6>("camera", camera);
+ //print_vector<double, 6>("image_bounds", image_bounds);
+ //print_vector<double, 3>("position", position);
+
+ // find where to place the VF actor. to deal with
+ // z-buffer issues, the VF is placed right in front of the image,
+ // subject to a small offset. the position actually depends on the
+ // the location of the camera relative to the image.
+ double offset = 1;
+ if (camera[this->SliceOrientation] < image_bounds[this->SliceOrientation*2])
+ offset = -1;
+
if (mVF && mVFActor->GetVisibility()) {
int vfExtent[6];
mVF->GetVTKImages()[0]->UpdateInformation();
orientation[this->SliceOrientation] = 0;
mGlyphFilter->SetOrientation(orientation[0], orientation[1], orientation[2]);
mVFMapper->Update();
+
+ position[this->SliceOrientation] += offset;
mVFActor->SetPosition(position);
}
- position[this->SliceOrientation] += positionInc;
-
+
// Landmarks actor
if (mLandActor) {
if (mClipBox) {
double bounds [6];
for(unsigned int i=0; i<6; i++)
bounds[i] = ImageActor->GetBounds()[i];
- bounds[ this->SliceOrientation*2 ] = ImageActor->GetBounds()[ this->SliceOrientation*2 ]-fabs(0.5/this->GetInput()->GetSpacing()[this->SliceOrientation]);
- bounds[ this->SliceOrientation*2+1 ] = ImageActor->GetBounds()[ this->SliceOrientation*2+1 ]+fabs(0.5/this->GetInput()->GetSpacing()[this->SliceOrientation]);
+ bounds[ this->SliceOrientation*2 ] = ImageActor->GetBounds()[ this->SliceOrientation*2 ]-fabs(this->GetInput()->GetSpacing()[this->SliceOrientation]);
+ bounds[ this->SliceOrientation*2+1 ] = ImageActor->GetBounds()[ this->SliceOrientation*2+1 ]+fabs(this->GetInput()->GetSpacing()[this->SliceOrientation]);
mClipBox->SetBounds(bounds);
UpdateLandmarks();
}
+
+ position[this->SliceOrientation] = offset;
mLandActor->SetPosition(position);
}
}
}
}
+
}
//----------------------------------------------------------------------------
//----------------------------------------------------------------------------
void vvSlicer::SetDisplayMode(bool i)
{
- this->GetImageActor()->SetVisibility(i);
- this->GetAnnotation()->SetVisibility(i);
this->GetRenderer()->SetDraw(i);
- if (mLandActor)
- mLandActor->SetVisibility(i);
- pdmA->SetVisibility(i);
if (i)
UpdateDisplayExtent();
}
vtkCamera *cam = this->Renderer ? this->Renderer->GetActiveCamera() : NULL;
if (cam) {
double *position = cam->GetPosition();
- switch (this->SliceOrientation) {
+ double factor[3] = {1, 1, 1};
+ factor[this->SliceOrientation] = -1;
+ cam->SetPosition(factor[0]*position[0],factor[1]*position[1],factor[2]*position[2]);
+
+/* switch (this->SliceOrientation) {
case vtkImageViewer2::SLICE_ORIENTATION_XY:
cam->SetPosition(position[0],position[1],-position[2]);
break;
case vtkImageViewer2::SLICE_ORIENTATION_YZ:
cam->SetPosition(-position[0],position[1],position[2]);
break;
- }
+ }*/
+
this->Renderer->ResetCameraClippingRange();
this->UpdateDisplayExtent();
}
vtkLookupTable* LUT = static_cast<vtkLookupTable*>(this->GetWindowLevel()->GetLookupTable());
if ( LUT ) {
double level = this->GetWindowLevel()->GetLevel();
- LUT->SetTableRange(level-fabs(window)/4,level+fabs(window)/4);
+ LUT->SetTableRange(level-fabs(window)/2,level+fabs(window)/2);
LUT->Build();
}
this->vtkImageViewer2::SetColorWindow(window);
}
//----------------------------------------------------------------------------
-
//----------------------------------------------------------------------------
void vvSlicer::SetColorLevel(double level)
{
vtkLookupTable* LUT = static_cast<vtkLookupTable*>(this->GetWindowLevel()->GetLookupTable());
if ( LUT ) {
double window = this->GetWindowLevel()->GetWindow();
- LUT->SetTableRange(level-fabs(window)/4,level+fabs(window)/4);
+ LUT->SetTableRange(level-fabs(window)/2,level+fabs(window)/2);
LUT->Build();
}
this->vtkImageViewer2::SetColorLevel(level);
}
//----------------------------------------------------------------------------
+//----------------------------------------------------------------------------
+double vvSlicer::GetOverlayColorWindow()
+{
+ if(mOverlayMapper)
+ return mOverlayMapper->GetWindow();
+ else
+ return 0.;
+}
+//----------------------------------------------------------------------------
+
+//----------------------------------------------------------------------------
+double vvSlicer::GetOverlayColorLevel()
+{
+ if(mOverlayMapper)
+ return mOverlayMapper->GetLevel();
+ else
+ return 0.;
+}
+//----------------------------------------------------------------------------
+
+//----------------------------------------------------------------------------
+void vvSlicer::SetOverlayColorWindow(double window)
+{
+ mOverlayMapper->SetWindow(window);
+}
+//----------------------------------------------------------------------------
+
+//----------------------------------------------------------------------------
+void vvSlicer::SetOverlayColorLevel(double level)
+{
+ mOverlayMapper->SetLevel(level);
+}
+//----------------------------------------------------------------------------
+
//----------------------------------------------------------------------------
// Returns the min an the max value in a 41x41 region around the mouse pointer
-void vvSlicer::GetExtremasAroundMousePointer(double & min, double & max)
+void vvSlicer::GetExtremasAroundMousePointer(double & min, double & max, vtkImageData *image)
{
//Get mouse pointer position in view coordinates
double fLocalExtents[6];
//Convert to image pixel coordinates (rounded)
int iLocalExtents[6];
for(int i=0; i<3; i++) {
- fLocalExtents[i*2 ] = (fLocalExtents[i*2 ] - this->GetInput()->GetOrigin()[i])/this->GetInput()->GetSpacing()[i];
- fLocalExtents[i*2+1] = (fLocalExtents[i*2+1] - this->GetInput()->GetOrigin()[i])/this->GetInput()->GetSpacing()[i];
+ fLocalExtents[i*2 ] = (fLocalExtents[i*2 ] - image->GetOrigin()[i])/image->GetSpacing()[i];
+ fLocalExtents[i*2+1] = (fLocalExtents[i*2+1] - image->GetOrigin()[i])/image->GetSpacing()[i];
iLocalExtents[i*2 ] = lrint(fLocalExtents[i*2 ]);
iLocalExtents[i*2+1] = lrint(fLocalExtents[i*2+1]);
}
vtkSmartPointer<vtkExtractVOI> voiFilter = vtkSmartPointer<vtkExtractVOI>::New();
- voiFilter->SetInput(this->GetInput());
+ voiFilter->SetInput(image);
voiFilter->SetVOI(iLocalExtents);
voiFilter->Update();
if (!voiFilter->GetOutput()->GetNumberOfPoints()) {
//----------------------------------------------------------------------------
//----------------------------------------------------------------------------
-double vvSlicer::GetScalarComponentAsDouble(vtkImageData *image, int X, double Y, double Z, int &ix, int &iy, int &iz, int component)
+double vvSlicer::GetScalarComponentAsDouble(vtkImageData *image, double X, double Y, double Z, int &ix, int &iy, int &iz, int component)
{
ix = lrint(X);
iy = lrint(Y);
iy > image->GetWholeExtent()[3] ||
iz < image->GetWholeExtent()[4] ||
iz > image->GetWholeExtent()[5] )
- return sqrt(-1.);
+ return std::numeric_limits<double>::quiet_NaN();
image->SetUpdateExtent(ix, ix, iy, iy, iz, iz);
image->Update();
} else legend->SetVisibility(0);
if (ca->GetVisibility()) {
- std::string worldPos = "";
- std::stringstream world1;
- std::stringstream world2;
- std::stringstream world3;
- world1 << (int)mCurrent[0];
- world2 << (int)mCurrent[1];
- world3 << (int)mCurrent[2];
+ std::stringstream worldPos;
double X = (mCurrent[0] - this->GetInput()->GetOrigin()[0])/this->GetInput()->GetSpacing()[0];
double Y = (mCurrent[1] - this->GetInput()->GetOrigin()[1])/this->GetInput()->GetSpacing()[1];
double Z = (mCurrent[2] - this->GetInput()->GetOrigin()[2])/this->GetInput()->GetSpacing()[2];
int ix, iy, iz;
double value = this->GetScalarComponentAsDouble(this->GetInput(), X, Y, Z, ix, iy, iz);
- std::stringstream pixel1;
- std::stringstream pixel2;
- std::stringstream pixel3;
- std::stringstream temps;
- pixel1 << ix;
- pixel2 << iy;
- pixel3 << iz;
- temps << mCurrentTSlice;
-
- std::stringstream val;
- val << value;
- worldPos += "data value : " + val.str();
- worldPos += "\n mm : " + world1.str() + " " + world2.str() + " " +
- world3.str() + " " + temps.str();
- worldPos += "\n pixel : " + pixel1.str() + " " + pixel2.str() + " " +
- pixel3.str() + " " + temps.str();
+ if(ImageActor->GetVisibility())
+ worldPos << "data value : " << value << std::endl;
+
+ worldPos << "mm : " << lrint(mCurrent[0]) << ' '
+ << lrint(mCurrent[1]) << ' '
+ << lrint(mCurrent[2]) << ' '
+ << mCurrentTSlice
+ << std::endl;
+ worldPos << "pixel : " << ix << ' '
+ << iy << ' '
+ << iz << ' '
+ << mCurrentTSlice
+ << std::endl;
}
- ca->SetText(1,worldPos.c_str());
+ ca->SetText(1,worldPos.str().c_str());
}
if (pdmA->GetVisibility()) {
if (mOverlay && mOverlayActor->GetVisibility()) {
- mOverlayMapper->SetWindow(this->GetColorWindow());
- mOverlayMapper->SetLevel(this->GetColorLevel());
+ if(mLinkOverlayWindowLevel) {
+ mOverlayMapper->SetWindow(this->GetColorWindow());
+ mOverlayMapper->SetLevel(this->GetColorLevel());
+ }
mOverlayMapper->GetOutput()->SetUpdateExtent(mOverlayActor->GetDisplayExtent());
mOverlayMapper->GetOutput()->Update();
mOverlayMapper->Update();
//----------------------------------------------------------------------------
void vvSlicer::UpdateCursorPosition()
{
- if (this->GetImageActor()->GetVisibility()) {
- pdmA->SetVisibility(true);
- mCursor[0] = mCurrent[0];
- mCursor[1] = mCurrent[1];
- mCursor[2] = mCurrent[2];
- mCursor[3] = mCurrentTSlice;
- }
+ pdmA->SetVisibility(true);
+ mCursor[0] = mCurrent[0];
+ mCursor[1] = mCurrent[1];
+ mCursor[2] = mCurrent[2];
+ mCursor[3] = mCurrentTSlice;
}
//----------------------------------------------------------------------------
{
if (mSurfaceCutActors.size() > 0)
for (std::vector<vvMeshActor*>::iterator i=mSurfaceCutActors.begin();
- i!=mSurfaceCutActors.end(); i++)
+ i!=mSurfaceCutActors.end(); i++) {
+
+ (*i)->SetSlicingOrientation(this->SliceOrientation);
(*i)->SetCutSlice((this->Slice)*this->GetImage()->GetSpacing()[this->SliceOrientation]+
this->GetImage()->GetOrigin()[this->SliceOrientation]);
+ }
}
//----------------------------------------------------------------------------
git://git.creatis.insa-lyon.fr / clitk.git / blobdiff