#include "vvInteractorStyleNavigator.h"
#include "vvLandmarks.h"
#include "vvMesh.h"
-#include "vvImageMapToWLColors.h"
#include "vvBlendImageActor.h"
#include <vtkImageActor.h>
mPreset = 0;
mOverlayColor = 130;
- mFusionOpacity = 70;
+ mFusionOpacity = 30;
+ mFusionThresOpacity = 1;
mFusionColorMap = 3;
mFusionWindow = 1000;
mFusionLevel = 1000;
-
+ mFusionShowLegend = true;
+
mLandmarks = NULL;
mLinkedId.resize(0);
for ( int i = 0; i < numberOfSlicers; i++)
mSlicers.push_back(vtkSmartPointer<vvSlicer>::New());
-
+ mSelectedSlicer = -1;
+
mPreviousSlice.resize(numberOfSlicers);
mPreviousTSlice.resize(numberOfSlicers);
+ mSlicingPreset = WORLD_SLICING;
}
//----------------------------------------------------------------------------
//----------------------------------------------------------------------------
-bool vvSlicerManager::SetOverlay(std::string filename,int dim, std::string component)
+bool vvSlicerManager::SetOverlay(std::vector<std::string> filenames,int dim, std::string component, vvImageReader::LoadedImageType type)
{
- mOverlayName = filename;
+ mOverlayName = filenames[0];
mOverlayComponent = component;
if (dim > mImage->GetNumberOfDimensions()) {
- mLastError = " Overlay dimension cannot be greater then reference image!";
+ mLastError = " Overlay dimension cannot be greater than reference image!";
return false;
}
if (mOverlayReader.IsNull())
mOverlayReader = vvImageReader::New();
- std::vector<std::string> filenames;
- filenames.push_back(filename);
mOverlayReader->SetInputFilenames(filenames);
- mOverlayReader->Update(mImage->GetNumberOfDimensions(),component.c_str(),mType);
+ mOverlayReader->Update(type);
if (mOverlayReader->GetLastError().size() == 0) {
for ( unsigned int i = 0; i < mSlicers.size(); i++) {
mSlicers[i]->SetOverlay(mOverlayReader->GetOutput());
double *fusRange = mFusionReader->GetOutput()->GetVTKImages()[0]->GetScalarRange();
mFusionLevel = (fusRange[0]+fusRange[1])/2;
mFusionWindow = fusRange[1]-fusRange[0];
+
return true;
}
//----------------------------------------------------------------------------
if (mVectorReader.IsNull())
mVectorReader = vvImageReader::New();
mVectorReader->SetInputFilename(filename);
- mVectorReader->Update(vvImageReader::VECTORFIELD);
+
+ if (mType == vvImageReader::IMAGEWITHTIME)
+ mVectorReader->Update(vvImageReader::VECTORFIELDWITHTIME);
+ else
+ mVectorReader->Update(vvImageReader::VECTORFIELD);
if (mVectorReader->GetLastError().size() != 0) {
mLastError = mVectorReader->GetLastError();
return false;
}
//----------------------------------------------------------------------------
+//----------------------------------------------------------------------------
+int vvSlicerManager::GetTSlice()
+{
+ return mSlicers[0]->GetTSlice();
+}
+//----------------------------------------------------------------------------
+
//----------------------------------------------------------------------------
void vvSlicerManager::SetTSlice(int slice)
{
if (mLandmarks)
mLandmarks->SetTime(slice);
for ( unsigned int i = 0; i < mSlicers.size(); i++) {
- if (slice != mSlicers[i]->GetTSlice()) {
+ if (slice != mSlicers[i]->GetMaxCurrentTSlice()) {
mSlicers[i]->SetTSlice(slice);
- if (mSlicers[i]->GetImageActor()->GetVisibility())
- UpdateTSlice(i);
+ UpdateTSlice(i);
}
}
}
//----------------------------------------------------------------------------
void vvSlicerManager::SetNextTSlice(int originating_slicer)
{
- int t = mSlicers[0]->GetTSlice();
+ int t = mSlicers[0]->GetMaxCurrentTSlice();
t++;
if (t > mSlicers[0]->GetTMax())
t = 0;
//----------------------------------------------------------------------------
void vvSlicerManager::SetPreviousTSlice(int originating_slicer)
{
- int t = mSlicers[0]->GetTSlice();
+ int t = mSlicers[0]->GetMaxCurrentTSlice();
t--;
if (t < 0)
t = mSlicers[0]->GetTMax();
if (mLandmarks)
mLandmarks->SetTime(tslice);
- if (mSlicers[slicer]->GetTSlice() == tslice) return;
+ if (mSlicers[slicer]->GetMaxCurrentTSlice() == tslice) return;
mSlicers[slicer]->SetTSlice(tslice);
- if (mSlicers[slicer]->GetImageActor()->GetVisibility())
- UpdateTSlice(slicer);
+
+ if(mSlicingPreset==VOXELS_SLICING) {
+ vtkMatrix4x4 *imageTransformInverse = vtkMatrix4x4::New();
+ mImage->GetTransform()[mSlicers[slicer]->GetTSlice()]->GetInverse(imageTransformInverse);
+ this->GetSlicer(slicer)->GetSlicingTransform()->SetMatrix(imageTransformInverse);
+ imageTransformInverse->Delete();
+ }
+
+ UpdateTSlice(slicer);
}
//----------------------------------------------------------------------------
}
//----------------------------------------------------------------------------
-
//----------------------------------------------------------------------------
void vvSlicerManager::SetColorLevel(double s)
{
}
//----------------------------------------------------------------------------
+//----------------------------------------------------------------------------
+void vvSlicerManager::SetOverlayColorWindow(double s)
+{
+ for ( unsigned int i = 0; i < mSlicers.size(); i++) {
+ mSlicers[i]->SetOverlayColorWindow(s);
+ }
+}
+//----------------------------------------------------------------------------
+
+//----------------------------------------------------------------------------
+void vvSlicerManager::SetOverlayColorLevel(double s)
+{
+ for ( unsigned int i = 0; i < mSlicers.size(); i++) {
+ mSlicers[i]->SetOverlayColorLevel(s);
+ }
+}
+//----------------------------------------------------------------------------
+
+//----------------------------------------------------------------------------
+void vvSlicerManager::SetLinkOverlayWindowLevel(bool b)
+{
+ for ( unsigned int i = 0; i < mSlicers.size(); i++) {
+ mSlicers[i]->SetLinkOverlayWindowLevel(b);
+ }
+}
+//----------------------------------------------------------------------------
+
//----------------------------------------------------------------------------
void vvSlicerManager::SetCursorAndCornerAnnotationVisibility(int s)
{
//----------------------------------------------------------------------------
void vvSlicerManager::UpdateViews(int current,int slicer)
{
- double x = (mSlicers[slicer]->GetCurrentPosition()[0] - mSlicers[slicer]->GetInput()->GetOrigin()[0])
+ double p[3], pt[3];
+ p[0] = mSlicers[slicer]->GetCurrentPosition()[0];
+ p[1] = mSlicers[slicer]->GetCurrentPosition()[1];
+ p[2] = mSlicers[slicer]->GetCurrentPosition()[2];
+ mSlicers[slicer]->GetSlicingTransform()->GetInverse()->TransformPoint(p, pt);
+
+ double x = (pt[0] - mSlicers[slicer]->GetInput()->GetOrigin()[0])
/mSlicers[slicer]->GetInput()->GetSpacing()[0];
- double y = (mSlicers[slicer]->GetCurrentPosition()[1] - mSlicers[slicer]->GetInput()->GetOrigin()[1])
+ double y = (pt[1] - mSlicers[slicer]->GetInput()->GetOrigin()[1])
/mSlicers[slicer]->GetInput()->GetSpacing()[1];
- double z = (mSlicers[slicer]->GetCurrentPosition()[2] - mSlicers[slicer]->GetInput()->GetOrigin()[2])
+ double z = (pt[2] - mSlicers[slicer]->GetInput()->GetOrigin()[2])
/mSlicers[slicer]->GetInput()->GetSpacing()[2];
- if (x >= mSlicers[slicer]->GetInput()->GetWholeExtent()[0] &&
- x <= mSlicers[slicer]->GetInput()->GetWholeExtent()[1] &&
- y >= mSlicers[slicer]->GetInput()->GetWholeExtent()[2] &&
- y <= mSlicers[slicer]->GetInput()->GetWholeExtent()[3] &&
- z >= mSlicers[slicer]->GetInput()->GetWholeExtent()[4] &&
- z <= mSlicers[slicer]->GetInput()->GetWholeExtent()[5]) {
+ if (x >= mSlicers[slicer]->GetInput()->GetWholeExtent()[0]-0.5 &&
+ x <= mSlicers[slicer]->GetInput()->GetWholeExtent()[1]+0.5 &&
+ y >= mSlicers[slicer]->GetInput()->GetWholeExtent()[2]-0.5 &&
+ y <= mSlicers[slicer]->GetInput()->GetWholeExtent()[3]+0.5 &&
+ z >= mSlicers[slicer]->GetInput()->GetWholeExtent()[4]-0.5 &&
+ z <= mSlicers[slicer]->GetInput()->GetWholeExtent()[5]+0.5) {
mSlicers[slicer]->UpdateCursorPosition();
mSlicers[slicer]->SetCursorColor(10,212,255);
+ mSelectedSlicer = slicer;
switch (mSlicers[slicer]->GetSliceOrientation()) {
case vtkImageViewer2::SLICE_ORIENTATION_XY:
- if (mSlicers[slicer]->GetSlice() != (int)floor(z))
- mSlicers[slicer]->SetSlice((int)floor(z));
+ if (mSlicers[slicer]->GetSlice() != (int)lrint(z))
+ mSlicers[slicer]->SetSlice((int)lrint(z));
break;
case vtkImageViewer2::SLICE_ORIENTATION_XZ:
- if (mSlicers[slicer]->GetSlice() != (int)floor(y))
- mSlicers[slicer]->SetSlice((int)floor(y));
+ if (mSlicers[slicer]->GetSlice() != (int)lrint(y))
+ mSlicers[slicer]->SetSlice((int)lrint(y));
break;
case vtkImageViewer2::SLICE_ORIENTATION_YZ:
- if (mSlicers[slicer]->GetSlice() != (int)floor(x))
- mSlicers[slicer]->SetSlice((int)floor(x));
+ if (mSlicers[slicer]->GetSlice() != (int)lrint(x))
+ mSlicers[slicer]->SetSlice((int)lrint(x));
break;
}
mSlicers[slicer]->Render();
for ( unsigned int i = 0; i < mSlicers.size(); i++) {
- if (i != (unsigned int)slicer && mSlicers[i]->GetImageActor()->GetVisibility()
+ if (i != (unsigned int)slicer
+ && mSlicers[i]->GetRenderer()->GetDraw()
&& mSlicers[i]->GetRenderWindow()->GetSize()[0] > 2
&& mSlicers[i]->GetRenderWindow()->GetSize()[1] > 2) {
- mSlicers[i]->SetCurrentPosition(mSlicers[slicer]->GetCurrentPosition()[0],
- mSlicers[slicer]->GetCurrentPosition()[1],
- mSlicers[slicer]->GetCurrentPosition()[2],
- mSlicers[slicer]->GetTSlice());
+ mSlicers[i]->SetCurrentPosition(p[0], p[1], p[2], mSlicers[slicer]->GetMaxCurrentTSlice());
mSlicers[i]->UpdateCursorPosition();
if (current) { //do not display corner annotation if image is the one picked
mSlicers[i]->SetCurrentPosition(-VTK_DOUBLE_MAX,-VTK_DOUBLE_MAX,
- -VTK_DOUBLE_MAX, mSlicers[slicer]->GetTSlice());
+ -VTK_DOUBLE_MAX, mSlicers[slicer]->GetMaxCurrentTSlice());
mSlicers[i]->SetCursorColor(255,10,212);
} else {
mSlicers[i]->SetCursorColor(150,10,282);
//----------------------------------------------------------------------------
void vvSlicerManager::UpdateLinked(int slicer)
{
- double x = (mSlicers[slicer]->GetCurrentPosition()[0] - mSlicers[slicer]->GetInput()->GetOrigin()[0])
- /mSlicers[slicer]->GetInput()->GetSpacing()[0];
- double y = (mSlicers[slicer]->GetCurrentPosition()[1] - mSlicers[slicer]->GetInput()->GetOrigin()[1])
- /mSlicers[slicer]->GetInput()->GetSpacing()[1];
- double z = (mSlicers[slicer]->GetCurrentPosition()[2] - mSlicers[slicer]->GetInput()->GetOrigin()[2])
- /mSlicers[slicer]->GetInput()->GetSpacing()[2];
-
- if (x >= mSlicers[slicer]->GetInput()->GetWholeExtent()[0] &&
- x <= mSlicers[slicer]->GetInput()->GetWholeExtent()[1] &&
- y >= mSlicers[slicer]->GetInput()->GetWholeExtent()[2] &&
- y <= mSlicers[slicer]->GetInput()->GetWholeExtent()[3] &&
- z >= mSlicers[slicer]->GetInput()->GetWholeExtent()[4] &&
- z <= mSlicers[slicer]->GetInput()->GetWholeExtent()[5]) {
+ double p[3], pt[3];
+ p[0] = mSlicers[slicer]->GetCurrentPosition()[0];
+ p[1] = mSlicers[slicer]->GetCurrentPosition()[1];
+ p[2] = mSlicers[slicer]->GetCurrentPosition()[2];
+ mSlicers[slicer]->GetSlicingTransform()->GetInverse()->TransformPoint(p, pt);
+ double x = (pt[0] - mSlicers[slicer]->GetInput()->GetOrigin()[0]) / mSlicers[slicer]->GetInput()->GetSpacing()[0];
+ double y = (pt[1] - mSlicers[slicer]->GetInput()->GetOrigin()[1]) / mSlicers[slicer]->GetInput()->GetSpacing()[1];
+ double z = (pt[2] - mSlicers[slicer]->GetInput()->GetOrigin()[2]) / mSlicers[slicer]->GetInput()->GetSpacing()[2];
+
+ if (x >= mSlicers[slicer]->GetInput()->GetWholeExtent()[0]-0.5 &&
+ x <= mSlicers[slicer]->GetInput()->GetWholeExtent()[1]+0.5 &&
+ y >= mSlicers[slicer]->GetInput()->GetWholeExtent()[2]-0.5 &&
+ y <= mSlicers[slicer]->GetInput()->GetWholeExtent()[3]+0.5 &&
+ z >= mSlicers[slicer]->GetInput()->GetWholeExtent()[4]-0.5 &&
+ z <= mSlicers[slicer]->GetInput()->GetWholeExtent()[5]+0.5) {
for (std::list<std::string>::const_iterator i = mLinkedId.begin(); i != mLinkedId.end(); i++) {
- emit UpdateLinkManager(*i, slicer,mSlicers[slicer]->GetCurrentPosition()[0],
- mSlicers[slicer]->GetCurrentPosition()[1],
- mSlicers[slicer]->GetCurrentPosition()[2],mSlicers[slicer]->GetTSlice());
+ emit UpdateLinkManager(*i, slicer, p[0], p[1], p[2], mSlicers[slicer]->GetMaxCurrentTSlice());
}
}
}
void vvSlicerManager::UpdateLinkedNavigation(vvSlicer *refSlicer, bool bPropagate)
{
vtkCamera *refCam = refSlicer->GetRenderer()->GetActiveCamera();
- double refPosition[3], refFocal[3];
+
+ double refPosition[3];
refCam->GetPosition(refPosition);
- refCam->GetFocalPoint(refFocal);
-
+ refPosition[refSlicer->GetSliceOrientation()] = refSlicer->GetSlice() *
+ refSlicer->GetInput()->GetSpacing()[refSlicer->GetSliceOrientation()] +
+ refSlicer->GetInput()->GetOrigin()[refSlicer->GetSliceOrientation()];
+
+ refSlicer->GetSlicingTransform()->TransformPoint(refPosition, refPosition);
+ mSlicers[0]->GetSlicingTransform()->GetInverse()->TransformPoint(refPosition, refPosition);
+
for ( unsigned int i = 0; i < mSlicers.size(); i++) {
vtkCamera *camera = mSlicers[i]->GetRenderer()->GetActiveCamera();
camera->SetParallelScale(refCam->GetParallelScale());
camera->GetPosition(position);
camera->GetFocalPoint(focal);
- if(refSlicer->GetSliceOrientation()==mSlicers[i]->GetSliceOrientation()) {
- for(int i=0; i<3; i++) {
- position[i] = refPosition[i];
- focal[i] = refFocal[i];
- }
- }
-
- if(refSlicer->GetSliceOrientation()==vtkImageViewer2::SLICE_ORIENTATION_XY) {
- if(mSlicers[i]->GetSliceOrientation()==vtkImageViewer2::SLICE_ORIENTATION_XZ) {
- position[0] = refPosition[0];
- focal[0] = refFocal[0];
- }
- if(mSlicers[i]->GetSliceOrientation()==vtkImageViewer2::SLICE_ORIENTATION_YZ) {
- position[1] = refPosition[1];
- focal[1] = refFocal[1];
- }
- }
-
- if(refSlicer->GetSliceOrientation()==vtkImageViewer2::SLICE_ORIENTATION_XZ) {
- if(mSlicers[i]->GetSliceOrientation()==vtkImageViewer2::SLICE_ORIENTATION_YZ) {
- position[2] = refPosition[2];
- focal[2] = refFocal[2];
- }
- if(mSlicers[i]->GetSliceOrientation()==vtkImageViewer2::SLICE_ORIENTATION_XY) {
- position[0] = refPosition[0];
- focal[0] = refFocal[0];
- }
- }
-
- if(refSlicer->GetSliceOrientation()==vtkImageViewer2::SLICE_ORIENTATION_YZ) {
- if(mSlicers[i]->GetSliceOrientation()==vtkImageViewer2::SLICE_ORIENTATION_XY) {
- position[1] = refPosition[1];
- focal[1] = refFocal[1];
- }
- if(mSlicers[i]->GetSliceOrientation()==vtkImageViewer2::SLICE_ORIENTATION_XZ) {
- position[2] = refPosition[2];
- focal[2] = refFocal[2];
+ for(int j=0; j<3; j++) {
+ if(j!=mSlicers[i]->GetSliceOrientation()) {
+ position[j] = refPosition[j];
+ focal[j] = refPosition[j];
}
}
camera->SetFocalPoint(focal);
camera->SetPosition(position);
-
+
//Fix for bug #243
mSlicers[i]->ForceUpdateDisplayExtent();
}
//----------------------------------------------------------------------------
//----------------------------------------------------------------------------
-double vvSlicerManager::GetColorWindow()
+double vvSlicerManager::GetColorWindow() const
{
if (mSlicers.size())
return mSlicers[0]->GetColorWindow();
//----------------------------------------------------------------------------
-double vvSlicerManager::GetColorLevel()
+double vvSlicerManager::GetColorLevel() const
{
if (mSlicers.size())
return mSlicers[0]->GetColorLevel();
}
//----------------------------------------------------------------------------
+//----------------------------------------------------------------------------
+double vvSlicerManager::GetOverlayColorWindow() const
+{
+ if (mSlicers.size())
+ return mSlicers[0]->GetOverlayColorWindow();
+ return -1;
+}
+//----------------------------------------------------------------------------
+
+//----------------------------------------------------------------------------
+double vvSlicerManager::GetOverlayColorLevel() const
+{
+ if (mSlicers.size())
+ return mSlicers[0]->GetOverlayColorLevel();
+ return -1;
+}
+//----------------------------------------------------------------------------
+
+//----------------------------------------------------------------------------
+bool vvSlicerManager::GetLinkOverlayWindowLevel() const
+{
+ if (mSlicers.size())
+ return mSlicers[0]->GetLinkOverlayWindowLevel();
+ return -1;
+}
+//----------------------------------------------------------------------------
+
+//------------------------------------------------------------------------------
+void vvSlicerManager::ResetTransformationToIdentity(const std::string actorType)
+{
+ if(actorType == "image")
+ for(unsigned int i=0; i<this->GetImage()->GetTransform().size(); i++)
+ this->GetImage()->GetTransform()[i]->Identity();
+ else if(actorType == "overlay")
+ for(unsigned int i=0; i<this->GetImage()->GetTransform().size(); i++)
+ this->GetSlicer(0)->GetOverlay()->GetTransform()[i]->Identity();
+ else if(actorType == "fusion")
+ for(unsigned int i=0; i<this->GetImage()->GetTransform().size(); i++)
+ this->GetSlicer(0)->GetFusion()->GetTransform()[i]->Identity();
+ else if(actorType == "vf")
+ for(unsigned int i=0; i<this->GetImage()->GetTransform().size(); i++)
+ this->GetVF()->GetTransform()[i]->Identity();
+ else
+ return;
+
+ for(int i=0; i< this->GetNumberOfSlicers(); i++){
+ this->GetSlicer(i)->ForceUpdateDisplayExtent();
+ this->GetSlicer(i)->ResetCamera();
+ this->GetSlicer(i)->Render();
+ }
+}
+//------------------------------------------------------------------------------
//----------------------------------------------------------------------------
void vvSlicerManager::Render()
//----------------------------------------------------------------------------
void vvSlicerManager::ReloadFusion()
{
- mFusionReader->Update();
+ mFusionReader->Update(mImage->GetNumberOfDimensions(),mFusionComponent.c_str(),mType);
+
for ( unsigned int i = 0; i < mSlicers.size(); i++) {
mSlicers[i]->SetFusion(mFusionReader->GetOutput());
mSlicers[i]->Render();
//----------------------------------------------------------------------------
void vvSlicerManager::ReloadOverlay()
{
- mOverlayReader->Update();
+ mOverlayReader->Update(mImage->GetNumberOfDimensions(),mOverlayComponent.c_str(),mType);
for ( unsigned int i = 0; i < mSlicers.size(); i++) {
mSlicers[i]->SetOverlay(mOverlayReader->GetOutput());
mSlicers[i]->Render();
Z <= mSlicers[slicer]->GetInput()->GetWholeExtent()[5]) {
value = this->GetScalarComponentAsDouble(mSlicers[slicer]->GetInput(), X, Y, Z);
- if (mSlicers[slicer]->GetVFActor() && mSlicers[slicer]->GetVFActor()->GetVisibility()) {
+ if (mSlicers[slicer]->GetVFActor() ) {
displayVec = 1;
- unsigned int currentTime = mSlicers[slicer]->GetTSlice();
+ unsigned int currentTime = mSlicers[slicer]->GetMaxCurrentTSlice();
vtkImageData *vf = NULL;
if (mSlicers[slicer]->GetVF()->GetVTKImages().size() > currentTime)
valueVec = sqrt(xVec*xVec + yVec*yVec + zVec*zVec);
}
}
- if (mSlicers[slicer]->GetOverlayActor() && mSlicers[slicer]->GetOverlayActor()->GetVisibility()) {
+ if (mSlicers[slicer]->GetOverlayActor() ) {
displayOver = 1;
vtkImageData *overlay = dynamic_cast<vtkImageData*>(mSlicers[slicer]->GetOverlayMapper()->GetInput());
double Xover = (x - overlay->GetOrigin()[0]) / overlay->GetSpacing()[0];
double Zover = (z - overlay->GetOrigin()[2]) / overlay->GetSpacing()[2];
valueOver = this->GetScalarComponentAsDouble(overlay, Xover, Yover, Zover);
}
- if (mSlicers[slicer]->GetFusionActor() && mSlicers[slicer]->GetFusionActor()->GetVisibility()) {
+ if (mSlicers[slicer]->GetFusionActor() ) {
displayFus = 1;
vtkImageData *fusion = dynamic_cast<vtkImageData*>(mSlicers[slicer]->GetFusionMapper()->GetInput());
double Xover = (x - fusion->GetOrigin()[0]) / fusion->GetSpacing()[0];
emit UpdateVector(displayVec,xVec, yVec, zVec, valueVec);
emit UpdateOverlay(displayOver,valueOver,value);
emit UpdateFusion(displayFus,valueFus);
- for (unsigned int i = 0; i < mSlicers.size(); i++) {
- if (mSlicers[i]->GetImageActor()->GetVisibility() == 1)
- emit UpdateWindows(i,mSlicers[i]->GetSliceOrientation(),mSlicers[i]->GetSlice());
- else
- emit UpdateWindows(i,-1,-1);
- }
}
}
//----------------------------------------------------------------------------
}
//----------------------------------------------------------------------------
+
//----------------------------------------------------------------------------
void vvSlicerManager::UpdateWindowLevel()
{
- emit WindowLevelChanged(mSlicers[0]->GetColorWindow(),mSlicers[0]->GetColorLevel(),mPreset,mColorMap);
+ emit WindowLevelChanged();
}
//----------------------------------------------------------------------------
void vvSlicerManager::UpdateTSlice(int slicer)
{
int slice = mSlicers[slicer]->GetSlice();
- int tslice = mSlicers[slicer]->GetTSlice();
+ int tslice = mSlicers[slicer]->GetMaxCurrentTSlice();
if (mPreviousSlice[slicer] == slice) {
if (mPreviousTSlice[slicer] == tslice) {
// DD("************** NOTHING ***********");
}
//----------------------------------------------------------------------------
+//----------------------------------------------------------------------------
+void vvSlicerManager::SetSlicingPreset(SlicingPresetType preset)
+{
+ if(mSlicingPreset==preset)
+ return;
+
+ vtkMatrix4x4 *imageTransformInverse = vtkMatrix4x4::New();
+ mImage->GetTransform()[this->GetTSlice()]->GetInverse(imageTransformInverse);
+
+ for(int i=0; i< this->GetNumberOfSlicers(); i++){
+ vvSlicer *s = this->GetSlicer(i);
+ switch(preset)
+ {
+ case WORLD_SLICING:
+ s->GetSlicingTransform()->Identity();
+ break;
+ case VOXELS_SLICING:
+ s->GetSlicingTransform()->SetMatrix(imageTransformInverse);
+ break;
+ default:
+ imageTransformInverse->Delete();
+ return;
+ }
+ s->ForceUpdateDisplayExtent();
+ s->SetSlice((s->GetInput()->GetWholeExtent()[s->GetSliceOrientation()*2+1]
+ +s->GetInput()->GetWholeExtent()[s->GetSliceOrientation()*2])/2.0);
+ s->ResetCamera();
+ s->Render();
+ }
+
+ imageTransformInverse->Delete();
+ mSlicingPreset = preset;
+}
+
+//----------------------------------------------------------------------------
//----------------------------------------------------------------------------
void vvSlicerManager::SetPreset(int preset)
window = 400;
level = 20;
break;
- case 3:
- window = 1500;
- level = -500;
+ case 3: // lungs (same as FOCAL)
+ window = 1700;
+ level = -300;
break;
case 4:
window = 1000;
//----------------------------------------------------------------------------
-void vvSlicerManager::SetLocalColorWindowing(const int slicer)
+void vvSlicerManager::SetLocalColorWindowing(const int slicer, const bool bCtrlKey)
{
double min, max;
- this->mSlicers[slicer]->GetExtremasAroundMousePointer(min, max);
- this->SetColorWindow(max-min);
- this->SetColorLevel(0.5*(min+max));
- this->UpdateWindowLevel();
+ if(bCtrlKey && this->mSlicers[slicer]->GetFusion()) {
+ int t = mSlicers[slicer]->GetFusionTSlice();
+ this->mSlicers[slicer]->GetExtremasAroundMousePointer(min, max,
+ this->mSlicers[slicer]->GetFusion()->GetVTKImages()[t],
+ this->mSlicers[slicer]->GetConcatenatedFusionTransform());
+ this->SetFusionWindow(max-min);
+ this->SetFusionLevel(0.5*(min+max));
+ this->SetColorMap(mColorMap);
+ }
+ else if(bCtrlKey && this->mSlicers[slicer]->GetOverlay()) {
+ int t = mSlicers[slicer]->GetOverlayTSlice();
+ this->mSlicers[slicer]->GetExtremasAroundMousePointer(min, max,
+ this->mSlicers[slicer]->GetOverlay()->GetVTKImages()[t],
+ this->mSlicers[slicer]->GetConcatenatedOverlayTransform());
+ if(this->mSlicers[slicer]->GetLinkOverlayWindowLevel()){
+ this->SetColorWindow(max-min);
+ this->SetColorLevel(0.5*(min+max));
+ } else {
+ this->SetOverlayColorWindow(max-min);
+ this->SetOverlayColorLevel(0.5*(min+max));
+ }
+ }
+ else {
+ int t = this->GetTSlice();
+ this->mSlicers[slicer]->GetExtremasAroundMousePointer(min, max,
+ this->mSlicers[slicer]->GetImage()->GetVTKImages()[t],
+ this->mSlicers[slicer]->GetConcatenatedTransform());
+ this->SetColorWindow(max-min);
+ this->SetColorLevel(0.5*(min+max));
+ this->SetPreset(6);
+ }
this->Render();
-}
-//----------------------------------------------------------------------------
-
-
-//----------------------------------------------------------------------------
-void vvSlicerManager::SetColorMap()
-{
- SetColorMap(mColorMap);
+ this->UpdateWindowLevel();
}
//----------------------------------------------------------------------------
case 3:
if (LUT == NULL)
LUT = vtkLookupTable::New();
- LUT->SetValueRange(0,1);
+ LUT->SetValueRange(0.5,1);
+ LUT->SetSaturationRange(1,1);
+ LUT->SetHueRange(0.666,0);
+ break;
+ case 4:
+ if (LUT == NULL)
+ LUT = vtkLookupTable::New();
+ LUT->SetValueRange(1,1);
LUT->SetSaturationRange(1,1);
LUT->SetHueRange(0,1);
+ LUT->SetAlphaRange(1, 1);
break;
case 5:
if (LUT == NULL)
LUT = vtkLookupTable::New();
- LUT->SetValueRange(0.,1);
+ LUT->SetValueRange(1,1);
LUT->SetSaturationRange(1,1);
LUT->SetHueRange(1,0.1);
//LUT->SetRampToLinear();
break;
}
if (LUT) {
- LUT->SetTableRange(level-fabs(window)/4,level+fabs(window)/4);
+ LUT->SetTableRange(level-fabs(window)/2,level+fabs(window)/2);
LUT->Build();
}
- vtkLookupTable* fusLUT = NULL;
- if (mSlicers[0]->GetFusion()) {
- fusLUT = vtkLookupTable::New();
+ vtkWindowLevelLookupTable* fusLUT = NULL;
+ if (mSlicers[0]->GetFusion()) { // && mFusionColorMap >= 0) {
+ fusLUT = vtkWindowLevelLookupTable::New();
double fusRange [2];
fusRange[0] = mFusionLevel - mFusionWindow/2;
fusRange[1] = mFusionLevel + mFusionWindow/2;
- fusLUT->SetTableRange(fusRange[0],fusRange[1]);
+ double* frange = mFusionReader->GetOutput()->GetVTKImages()[0]->GetScalarRange();
+ fusLUT->SetTableRange(frange);
fusLUT->SetValueRange(1,1);
fusLUT->SetSaturationRange(1,1);
+ fusLUT->SetAlphaRange(1, 1);
+ fusLUT->SetWindow(mFusionWindow);
+ fusLUT->SetLevel(mFusionLevel);
if (mFusionColorMap == 1)
fusLUT->SetHueRange(0,0.18);
else if (mFusionColorMap == 2)
fusLUT->SetHueRange(0.4,0.80);
else if (mFusionColorMap == 3)
+ {
+ fusLUT->SetHueRange(0.666, 0);
+ fusLUT->SetValueRange(0.5, 1);
+ }
+ else if (mFusionColorMap == 4)
fusLUT->SetHueRange(0,1);
- fusLUT->Build();
- if (mFusionColorMap == 0)
- fusLUT = NULL;
+ else if (mFusionColorMap <= 0)
+ {
+ fusLUT->SetValueRange(0,1);
+ fusLUT->SetSaturationRange(0,0);
+ }
+
+ fusLUT->ForceBuild();
+ double v[4];
+
+ // set color table transparency
+ //double alpha_range=(double)mFusionThresOpacity/10;
+ double range_end = fusRange[0] + (double)mFusionThresOpacity*(fusRange[1] - fusRange[0])/100;
+ double curr_value = fusRange[0];
+ int nvalues = fusLUT->GetNumberOfTableValues();
+ for (double i = 0; curr_value < range_end; i++) {
+ fusLUT->GetTableValue(i, v);
+ v[3] = 0;
+ //if (curr_value >= -alpha_range && curr_value <= alpha_range) v[3] = pow(fabs(curr_value/alpha_range),2);
+ //else v[3] = 1;
+ fusLUT->SetTableValue(i, v);
+ curr_value += (fusRange[1] - fusRange[0])/nvalues;
+ }
}
for ( unsigned int i = 0; i < mSlicers.size(); i++) {
- if (mSlicers[i]->GetOverlay() && mSlicers[i]->GetOverlayActor()->GetVisibility()) {
+
+ if (mSlicers[i]->GetOverlay()) {
vtkLookupTable* supLUT = vtkLookupTable::New();
supLUT->SetTableRange(range[0],range[1]);
supLUT->SetValueRange(1,1);
invLUT->SetSaturationRange(1,1);
invLUT->SetHueRange(double((mOverlayColor+180)%360)/360,double((mOverlayColor+180)%360)/360);
invLUT->Build();
- dynamic_cast<vvImageMapToWLColors*>(mSlicers[i]->GetWindowLevel())
- ->SetWindowLevelMode(true);
mSlicers[i]->GetWindowLevel()->SetLookupTable(supLUT);
mSlicers[i]->GetOverlayMapper()->SetLookupTable(invLUT);
invLUT->Delete();
supLUT->Delete();
} else if (mSlicers[i]->GetOverlay()) {
- //dynamic_cast<vvImageMapToWLColors*>(mSlicers[i]->GetWindowLevel())
- //->SetWindowLevelMode(false);
mSlicers[i]->GetWindowLevel()->SetLookupTable(LUT);
} else {
mSlicers[i]->GetWindowLevel()->SetLookupTable(LUT);
}
- if (mSlicers[i]->GetFusion() && mSlicers[i]->GetFusionActor()->GetVisibility()) {
- mSlicers[i]->GetFusionActor()->SetOpacity(double(mFusionOpacity)/100);
+
+ if (mSlicers[i]->GetFusion()) {
+ mSlicers[i]->ShowFusionLegend(mFusionShowLegend);
mSlicers[i]->GetFusionMapper()->SetLookupTable(fusLUT);
- mSlicers[i]->GetFusionMapper()->SetWindow(mFusionWindow);
- mSlicers[i]->GetFusionMapper()->SetLevel(mFusionLevel);
+ mSlicers[i]->GetFusionActor()->SetOpacity(double(mFusionOpacity)/100);
}
}
if (fusLUT)
double x_index = (x - mSlicers[0]->GetInput()->GetOrigin()[0])/mSlicers[0]->GetInput()->GetSpacing()[0];
double y_index = (y - mSlicers[0]->GetInput()->GetOrigin()[1])/mSlicers[0]->GetInput()->GetSpacing()[1];
double z_index = (z - mSlicers[0]->GetInput()->GetOrigin()[2])/mSlicers[0]->GetInput()->GetSpacing()[2];
- if (x_index >= mSlicers[0]->GetInput()->GetWholeExtent()[0] &&
- x_index <= mSlicers[0]->GetInput()->GetWholeExtent()[1] &&
- y_index >= mSlicers[0]->GetInput()->GetWholeExtent()[2] &&
- y_index <= mSlicers[0]->GetInput()->GetWholeExtent()[3] &&
- z_index >= mSlicers[0]->GetInput()->GetWholeExtent()[4] &&
- z_index <= mSlicers[0]->GetInput()->GetWholeExtent()[5]) {
+ if (x_index >= mSlicers[0]->GetInput()->GetWholeExtent()[0]-0.5 &&
+ x_index <= mSlicers[0]->GetInput()->GetWholeExtent()[1]+0.5 &&
+ y_index >= mSlicers[0]->GetInput()->GetWholeExtent()[2]-0.5 &&
+ y_index <= mSlicers[0]->GetInput()->GetWholeExtent()[3]+0.5 &&
+ z_index >= mSlicers[0]->GetInput()->GetWholeExtent()[4]-0.5 &&
+ z_index <= mSlicers[0]->GetInput()->GetWholeExtent()[5]+0.5) {
double value = this->GetScalarComponentAsDouble(mSlicers[0]->GetInput(), x_index, y_index, z_index);
this->GetLandmarks()->AddLandmark(x,y,z,t,value);
emit LandmarkAdded();
git://git.creatis.insa-lyon.fr / clitk.git / blobdiff