mFusionColorMap = 3;
mFusionWindow = 1000;
mFusionLevel = 1000;
-
+ mFusionShowLegend = true;
+
mLandmarks = NULL;
mLinkedId.resize(0);
mPreviousSlice.resize(numberOfSlicers);
mPreviousTSlice.resize(numberOfSlicers);
+ mSlicingPreset = WORLD_SLICING;
}
//----------------------------------------------------------------------------
}
//----------------------------------------------------------------------------
+//----------------------------------------------------------------------------
+int vvSlicerManager::GetTSlice()
+{
+ return mSlicers[0]->GetTSlice();
+}
+//----------------------------------------------------------------------------
+
//----------------------------------------------------------------------------
void vvSlicerManager::SetTSlice(int slice)
{
for ( unsigned int i = 0; i < mSlicers.size(); i++) {
if (slice != mSlicers[i]->GetTSlice()) {
mSlicers[i]->SetTSlice(slice);
- UpdateTSlice(i);
+ UpdateTSlice(i);
}
}
}
if (mSlicers[slicer]->GetTSlice() == tslice) return;
+ if(mSlicingPreset==VOXELS_SLICING) {
+ vtkMatrix4x4 *imageTransformInverse = vtkMatrix4x4::New();
+ mImage->GetTransform()[tslice]->GetInverse(imageTransformInverse);
+ this->GetSlicer(slicer)->GetSlicingTransform()->SetMatrix(imageTransformInverse);
+ imageTransformInverse->Delete();
+ }
+
mSlicers[slicer]->SetTSlice(tslice);
UpdateTSlice(slicer);
}
//----------------------------------------------------------------------------
void vvSlicerManager::UpdateViews(int current,int slicer)
{
- double x = (mSlicers[slicer]->GetCurrentPosition()[0] - mSlicers[slicer]->GetInput()->GetOrigin()[0])
+ double p[3], pt[3];
+ p[0] = mSlicers[slicer]->GetCurrentPosition()[0];
+ p[1] = mSlicers[slicer]->GetCurrentPosition()[1];
+ p[2] = mSlicers[slicer]->GetCurrentPosition()[2];
+ mSlicers[slicer]->GetSlicingTransform()->GetInverse()->TransformPoint(p, pt);
+
+ double x = (pt[0] - mSlicers[slicer]->GetInput()->GetOrigin()[0])
/mSlicers[slicer]->GetInput()->GetSpacing()[0];
- double y = (mSlicers[slicer]->GetCurrentPosition()[1] - mSlicers[slicer]->GetInput()->GetOrigin()[1])
+ double y = (pt[1] - mSlicers[slicer]->GetInput()->GetOrigin()[1])
/mSlicers[slicer]->GetInput()->GetSpacing()[1];
- double z = (mSlicers[slicer]->GetCurrentPosition()[2] - mSlicers[slicer]->GetInput()->GetOrigin()[2])
+ double z = (pt[2] - mSlicers[slicer]->GetInput()->GetOrigin()[2])
/mSlicers[slicer]->GetInput()->GetSpacing()[2];
- if (x >= mSlicers[slicer]->GetInput()->GetWholeExtent()[0] &&
- x <= mSlicers[slicer]->GetInput()->GetWholeExtent()[1] &&
- y >= mSlicers[slicer]->GetInput()->GetWholeExtent()[2] &&
- y <= mSlicers[slicer]->GetInput()->GetWholeExtent()[3] &&
- z >= mSlicers[slicer]->GetInput()->GetWholeExtent()[4] &&
- z <= mSlicers[slicer]->GetInput()->GetWholeExtent()[5]) {
+ if (x >= mSlicers[slicer]->GetInput()->GetWholeExtent()[0]-0.5 &&
+ x <= mSlicers[slicer]->GetInput()->GetWholeExtent()[1]+0.5 &&
+ y >= mSlicers[slicer]->GetInput()->GetWholeExtent()[2]-0.5 &&
+ y <= mSlicers[slicer]->GetInput()->GetWholeExtent()[3]+0.5 &&
+ z >= mSlicers[slicer]->GetInput()->GetWholeExtent()[4]-0.5 &&
+ z <= mSlicers[slicer]->GetInput()->GetWholeExtent()[5]+0.5) {
mSlicers[slicer]->UpdateCursorPosition();
mSlicers[slicer]->SetCursorColor(10,212,255);
switch (mSlicers[slicer]->GetSliceOrientation()) {
case vtkImageViewer2::SLICE_ORIENTATION_XY:
- if (mSlicers[slicer]->GetSlice() != (int)floor(z))
- mSlicers[slicer]->SetSlice((int)floor(z));
+ if (mSlicers[slicer]->GetSlice() != (int)lrint(z))
+ mSlicers[slicer]->SetSlice((int)lrint(z));
break;
case vtkImageViewer2::SLICE_ORIENTATION_XZ:
- if (mSlicers[slicer]->GetSlice() != (int)floor(y))
- mSlicers[slicer]->SetSlice((int)floor(y));
+ if (mSlicers[slicer]->GetSlice() != (int)lrint(y))
+ mSlicers[slicer]->SetSlice((int)lrint(y));
break;
case vtkImageViewer2::SLICE_ORIENTATION_YZ:
- if (mSlicers[slicer]->GetSlice() != (int)floor(x))
- mSlicers[slicer]->SetSlice((int)floor(x));
+ if (mSlicers[slicer]->GetSlice() != (int)lrint(x))
+ mSlicers[slicer]->SetSlice((int)lrint(x));
break;
}
mSlicers[slicer]->Render();
&& mSlicers[i]->GetRenderer()->GetDraw()
&& mSlicers[i]->GetRenderWindow()->GetSize()[0] > 2
&& mSlicers[i]->GetRenderWindow()->GetSize()[1] > 2) {
- mSlicers[i]->SetCurrentPosition(mSlicers[slicer]->GetCurrentPosition()[0],
- mSlicers[slicer]->GetCurrentPosition()[1],
- mSlicers[slicer]->GetCurrentPosition()[2],
- mSlicers[slicer]->GetTSlice());
+ mSlicers[i]->SetCurrentPosition(p[0], p[1], p[2], mSlicers[slicer]->GetTSlice());
mSlicers[i]->UpdateCursorPosition();
if (current) { //do not display corner annotation if image is the one picked
mSlicers[i]->SetCurrentPosition(-VTK_DOUBLE_MAX,-VTK_DOUBLE_MAX,
//----------------------------------------------------------------------------
void vvSlicerManager::UpdateLinked(int slicer)
{
- double x = (mSlicers[slicer]->GetCurrentPosition()[0] - mSlicers[slicer]->GetInput()->GetOrigin()[0])
- /mSlicers[slicer]->GetInput()->GetSpacing()[0];
- double y = (mSlicers[slicer]->GetCurrentPosition()[1] - mSlicers[slicer]->GetInput()->GetOrigin()[1])
- /mSlicers[slicer]->GetInput()->GetSpacing()[1];
- double z = (mSlicers[slicer]->GetCurrentPosition()[2] - mSlicers[slicer]->GetInput()->GetOrigin()[2])
- /mSlicers[slicer]->GetInput()->GetSpacing()[2];
-
- if (x >= mSlicers[slicer]->GetInput()->GetWholeExtent()[0] &&
- x <= mSlicers[slicer]->GetInput()->GetWholeExtent()[1] &&
- y >= mSlicers[slicer]->GetInput()->GetWholeExtent()[2] &&
- y <= mSlicers[slicer]->GetInput()->GetWholeExtent()[3] &&
- z >= mSlicers[slicer]->GetInput()->GetWholeExtent()[4] &&
- z <= mSlicers[slicer]->GetInput()->GetWholeExtent()[5]) {
+ double p[3], pt[3];
+ p[0] = mSlicers[slicer]->GetCurrentPosition()[0];
+ p[1] = mSlicers[slicer]->GetCurrentPosition()[1];
+ p[2] = mSlicers[slicer]->GetCurrentPosition()[2];
+ mSlicers[slicer]->GetSlicingTransform()->GetInverse()->TransformPoint(p, pt);
+ double x = (pt[0] - mSlicers[slicer]->GetInput()->GetOrigin()[0]) / mSlicers[slicer]->GetInput()->GetSpacing()[0];
+ double y = (pt[1] - mSlicers[slicer]->GetInput()->GetOrigin()[1]) / mSlicers[slicer]->GetInput()->GetSpacing()[1];
+ double z = (pt[2] - mSlicers[slicer]->GetInput()->GetOrigin()[2]) / mSlicers[slicer]->GetInput()->GetSpacing()[2];
+
+ if (x >= mSlicers[slicer]->GetInput()->GetWholeExtent()[0]-0.5 &&
+ x <= mSlicers[slicer]->GetInput()->GetWholeExtent()[1]+0.5 &&
+ y >= mSlicers[slicer]->GetInput()->GetWholeExtent()[2]-0.5 &&
+ y <= mSlicers[slicer]->GetInput()->GetWholeExtent()[3]+0.5 &&
+ z >= mSlicers[slicer]->GetInput()->GetWholeExtent()[4]-0.5 &&
+ z <= mSlicers[slicer]->GetInput()->GetWholeExtent()[5]+0.5) {
for (std::list<std::string>::const_iterator i = mLinkedId.begin(); i != mLinkedId.end(); i++) {
- emit UpdateLinkManager(*i, slicer,mSlicers[slicer]->GetCurrentPosition()[0],
- mSlicers[slicer]->GetCurrentPosition()[1],
- mSlicers[slicer]->GetCurrentPosition()[2],mSlicers[slicer]->GetTSlice());
+ emit UpdateLinkManager(*i, slicer, p[0], p[1], p[2], mSlicers[slicer]->GetTSlice());
}
}
}
void vvSlicerManager::UpdateLinkedNavigation(vvSlicer *refSlicer, bool bPropagate)
{
vtkCamera *refCam = refSlicer->GetRenderer()->GetActiveCamera();
- double refPosition[3], refFocal[3];
+
+ double refPosition[3];
refCam->GetPosition(refPosition);
- refCam->GetFocalPoint(refFocal);
-
+ refPosition[refSlicer->GetSliceOrientation()] = refSlicer->GetSlice() *
+ refSlicer->GetInput()->GetSpacing()[refSlicer->GetSliceOrientation()] +
+ refSlicer->GetInput()->GetOrigin()[refSlicer->GetSliceOrientation()];
+
+ refSlicer->GetSlicingTransform()->TransformPoint(refPosition, refPosition);
+ mSlicers[0]->GetSlicingTransform()->GetInverse()->TransformPoint(refPosition, refPosition);
+
for ( unsigned int i = 0; i < mSlicers.size(); i++) {
vtkCamera *camera = mSlicers[i]->GetRenderer()->GetActiveCamera();
camera->SetParallelScale(refCam->GetParallelScale());
camera->GetPosition(position);
camera->GetFocalPoint(focal);
- if(refSlicer->GetSliceOrientation()==mSlicers[i]->GetSliceOrientation()) {
- for(int i=0; i<3; i++) {
- position[i] = refPosition[i];
- focal[i] = refFocal[i];
- }
- }
-
- if(refSlicer->GetSliceOrientation()==vtkImageViewer2::SLICE_ORIENTATION_XY) {
- if(mSlicers[i]->GetSliceOrientation()==vtkImageViewer2::SLICE_ORIENTATION_XZ) {
- position[0] = refPosition[0];
- focal[0] = refFocal[0];
- }
- if(mSlicers[i]->GetSliceOrientation()==vtkImageViewer2::SLICE_ORIENTATION_YZ) {
- position[1] = refPosition[1];
- focal[1] = refFocal[1];
- }
- }
-
- if(refSlicer->GetSliceOrientation()==vtkImageViewer2::SLICE_ORIENTATION_XZ) {
- if(mSlicers[i]->GetSliceOrientation()==vtkImageViewer2::SLICE_ORIENTATION_YZ) {
- position[2] = refPosition[2];
- focal[2] = refFocal[2];
- }
- if(mSlicers[i]->GetSliceOrientation()==vtkImageViewer2::SLICE_ORIENTATION_XY) {
- position[0] = refPosition[0];
- focal[0] = refFocal[0];
- }
- }
-
- if(refSlicer->GetSliceOrientation()==vtkImageViewer2::SLICE_ORIENTATION_YZ) {
- if(mSlicers[i]->GetSliceOrientation()==vtkImageViewer2::SLICE_ORIENTATION_XY) {
- position[1] = refPosition[1];
- focal[1] = refFocal[1];
- }
- if(mSlicers[i]->GetSliceOrientation()==vtkImageViewer2::SLICE_ORIENTATION_XZ) {
- position[2] = refPosition[2];
- focal[2] = refFocal[2];
+ for(int j=0; j<3; j++) {
+ if(j!=mSlicers[i]->GetSliceOrientation()) {
+ position[j] = refPosition[j];
+ focal[j] = refPosition[j];
}
}
camera->SetFocalPoint(focal);
camera->SetPosition(position);
-
+
//Fix for bug #243
mSlicers[i]->ForceUpdateDisplayExtent();
}
//----------------------------------------------------------------------------
//----------------------------------------------------------------------------
-double vvSlicerManager::GetOverlayColorWindow()
+double vvSlicerManager::GetOverlayColorWindow() const
{
if (mSlicers.size())
return mSlicers[0]->GetOverlayColorWindow();
//----------------------------------------------------------------------------
//----------------------------------------------------------------------------
-double vvSlicerManager::GetOverlayColorLevel()
+double vvSlicerManager::GetOverlayColorLevel() const
{
if (mSlicers.size())
return mSlicers[0]->GetOverlayColorLevel();
//----------------------------------------------------------------------------
//----------------------------------------------------------------------------
-bool vvSlicerManager::GetLinkOverlayWindowLevel()
+bool vvSlicerManager::GetLinkOverlayWindowLevel() const
{
if (mSlicers.size())
return mSlicers[0]->GetLinkOverlayWindowLevel();
void vvSlicerManager::ResetTransformationToIdentity(const std::string actorType)
{
if(actorType == "image")
- this->GetImage()->GetTransform()->Identity();
+ for(unsigned int i=0; i<this->GetImage()->GetTransform().size(); i++)
+ this->GetImage()->GetTransform()[i]->Identity();
else if(actorType == "overlay")
- this->GetSlicer(0)->GetOverlay()->GetTransform()->Identity();
+ for(unsigned int i=0; i<this->GetImage()->GetTransform().size(); i++)
+ this->GetSlicer(0)->GetOverlay()->GetTransform()[i]->Identity();
else if(actorType == "fusion")
- this->GetSlicer(0)->GetFusion()->GetTransform()->Identity();
+ for(unsigned int i=0; i<this->GetImage()->GetTransform().size(); i++)
+ this->GetSlicer(0)->GetFusion()->GetTransform()[i]->Identity();
else if(actorType == "vf")
- this->GetVF()->GetTransform()->Identity();
+ for(unsigned int i=0; i<this->GetImage()->GetTransform().size(); i++)
+ this->GetVF()->GetTransform()[i]->Identity();
else
return;
//----------------------------------------------------------------------------
void vvSlicerManager::ReloadFusion()
{
- mFusionReader->Update();
+ mFusionReader->Update(mImage->GetNumberOfDimensions(),mFusionComponent.c_str(),mType);
+
for ( unsigned int i = 0; i < mSlicers.size(); i++) {
mSlicers[i]->SetFusion(mFusionReader->GetOutput());
mSlicers[i]->Render();
//----------------------------------------------------------------------------
void vvSlicerManager::ReloadOverlay()
{
- mOverlayReader->Update();
+ mOverlayReader->Update(mImage->GetNumberOfDimensions(),mOverlayComponent.c_str(),mType);
for ( unsigned int i = 0; i < mSlicers.size(); i++) {
mSlicers[i]->SetOverlay(mOverlayReader->GetOutput());
mSlicers[i]->Render();
}
//----------------------------------------------------------------------------
+//----------------------------------------------------------------------------
+void vvSlicerManager::SetSlicingPreset(SlicingPresetType preset)
+{
+ if(mSlicingPreset==preset)
+ return;
+
+ vtkMatrix4x4 *imageTransformInverse = vtkMatrix4x4::New();
+ mImage->GetTransform()[this->GetTSlice()]->GetInverse(imageTransformInverse);
+
+ for(int i=0; i< this->GetNumberOfSlicers(); i++){
+ vvSlicer *s = this->GetSlicer(i);
+ switch(preset)
+ {
+ case WORLD_SLICING:
+ s->GetSlicingTransform()->Identity();
+ break;
+ case VOXELS_SLICING:
+ s->GetSlicingTransform()->SetMatrix(imageTransformInverse);
+ break;
+ default:
+ imageTransformInverse->Delete();
+ return;
+ }
+ s->ForceUpdateDisplayExtent();
+ s->SetSlice((s->GetInput()->GetWholeExtent()[s->GetSliceOrientation()*2+1]
+ +s->GetInput()->GetWholeExtent()[s->GetSliceOrientation()*2])/2.0);
+ s->ResetCamera();
+ s->Render();
+ }
+
+ imageTransformInverse->Delete();
+ mSlicingPreset = preset;
+}
+
+//----------------------------------------------------------------------------
//----------------------------------------------------------------------------
void vvSlicerManager::SetPreset(int preset)
void vvSlicerManager::SetLocalColorWindowing(const int slicer, const bool bCtrlKey)
{
double min, max;
- int t = this->mSlicers[slicer]->GetTSlice();
if(bCtrlKey && this->mSlicers[slicer]->GetFusion()) {
- this->mSlicers[slicer]->GetExtremasAroundMousePointer(min, max, this->mSlicers[slicer]->GetFusion()->GetVTKImages()[t]);
+ int t = mSlicers[slicer]->GetFusionTSlice();
+ this->mSlicers[slicer]->GetExtremasAroundMousePointer(min, max,
+ this->mSlicers[slicer]->GetFusion()->GetVTKImages()[t],
+ this->mSlicers[slicer]->GetConcatenatedFusionTransform());
this->SetFusionWindow(max-min);
this->SetFusionLevel(0.5*(min+max));
this->SetColorMap(mColorMap);
}
else if(bCtrlKey && this->mSlicers[slicer]->GetOverlay()) {
- this->mSlicers[slicer]->GetExtremasAroundMousePointer(min, max, this->mSlicers[slicer]->GetOverlay()->GetVTKImages()[t]);
+ int t = mSlicers[slicer]->GetOverlayTSlice();
+ this->mSlicers[slicer]->GetExtremasAroundMousePointer(min, max,
+ this->mSlicers[slicer]->GetOverlay()->GetVTKImages()[t],
+ this->mSlicers[slicer]->GetConcatenatedOverlayTransform());
if(this->mSlicers[slicer]->GetLinkOverlayWindowLevel()){
this->SetColorWindow(max-min);
this->SetColorLevel(0.5*(min+max));
}
}
else {
- this->mSlicers[slicer]->GetExtremasAroundMousePointer(min, max, this->mSlicers[slicer]->GetInput());
+ int t = this->GetTSlice();
+ this->mSlicers[slicer]->GetExtremasAroundMousePointer(min, max,
+ this->mSlicers[slicer]->GetImage()->GetVTKImages()[t],
+ this->mSlicers[slicer]->GetConcatenatedTransform());
this->SetColorWindow(max-min);
this->SetColorLevel(0.5*(min+max));
this->SetPreset(6);
case 4:
if (LUT == NULL)
LUT = vtkLookupTable::New();
- LUT->SetValueRange(0,1);
+ LUT->SetValueRange(1,1);
LUT->SetSaturationRange(1,1);
LUT->SetHueRange(0,1);
+ LUT->SetAlphaRange(1, 1);
break;
case 5:
if (LUT == NULL)
LUT = vtkLookupTable::New();
- LUT->SetValueRange(0.,1);
+ LUT->SetValueRange(1,1);
LUT->SetSaturationRange(1,1);
LUT->SetHueRange(1,0.1);
//LUT->SetRampToLinear();
}
fusLUT->ForceBuild();
+ double v[4];
// set color table transparency
- double alpha_range_end = frange[0] + (double)mFusionThresOpacity*(frange[1] - frange[0])/100;
- for (double i = frange[0]; i < alpha_range_end; i++) {
- double v[4];
- vtkIdType index = fusLUT->GetIndex(i);
- fusLUT->GetTableValue(index, v);
+ //double alpha_range=(double)mFusionThresOpacity/10;
+ double range_end = fusRange[0] + (double)mFusionThresOpacity*(fusRange[1] - fusRange[0])/100;
+ double curr_value = fusRange[0];
+ int nvalues = fusLUT->GetNumberOfTableValues();
+ for (double i = 0; curr_value < range_end; i++) {
+ fusLUT->GetTableValue(i, v);
v[3] = 0;
- fusLUT->SetTableValue(index, v);
+ //if (curr_value >= -alpha_range && curr_value <= alpha_range) v[3] = pow(fabs(curr_value/alpha_range),2);
+ //else v[3] = 1;
+ fusLUT->SetTableValue(i, v);
+ curr_value += (fusRange[1] - fusRange[0])/nvalues;
}
}
for ( unsigned int i = 0; i < mSlicers.size(); i++) {
}
if (mSlicers[i]->GetFusion()) {
+ mSlicers[i]->ShowFusionLegend(mFusionShowLegend);
mSlicers[i]->GetFusionMapper()->SetLookupTable(fusLUT);
mSlicers[i]->GetFusionActor()->SetOpacity(double(mFusionOpacity)/100);
}
double x_index = (x - mSlicers[0]->GetInput()->GetOrigin()[0])/mSlicers[0]->GetInput()->GetSpacing()[0];
double y_index = (y - mSlicers[0]->GetInput()->GetOrigin()[1])/mSlicers[0]->GetInput()->GetSpacing()[1];
double z_index = (z - mSlicers[0]->GetInput()->GetOrigin()[2])/mSlicers[0]->GetInput()->GetSpacing()[2];
- if (x_index >= mSlicers[0]->GetInput()->GetWholeExtent()[0] &&
- x_index <= mSlicers[0]->GetInput()->GetWholeExtent()[1] &&
- y_index >= mSlicers[0]->GetInput()->GetWholeExtent()[2] &&
- y_index <= mSlicers[0]->GetInput()->GetWholeExtent()[3] &&
- z_index >= mSlicers[0]->GetInput()->GetWholeExtent()[4] &&
- z_index <= mSlicers[0]->GetInput()->GetWholeExtent()[5]) {
+ if (x_index >= mSlicers[0]->GetInput()->GetWholeExtent()[0]-0.5 &&
+ x_index <= mSlicers[0]->GetInput()->GetWholeExtent()[1]+0.5 &&
+ y_index >= mSlicers[0]->GetInput()->GetWholeExtent()[2]-0.5 &&
+ y_index <= mSlicers[0]->GetInput()->GetWholeExtent()[3]+0.5 &&
+ z_index >= mSlicers[0]->GetInput()->GetWholeExtent()[4]-0.5 &&
+ z_index <= mSlicers[0]->GetInput()->GetWholeExtent()[5]+0.5) {
double value = this->GetScalarComponentAsDouble(mSlicers[0]->GetInput(), x_index, y_index, z_index);
this->GetLandmarks()->AddLandmark(x,y,z,t,value);
emit LandmarkAdded();