- /*=========================================================================
+/*=========================================================================
Program: vv http://www.creatis.insa-lyon.fr/rio/vv
- Authors belong to:
+ Authors belong to:
- University of LYON http://www.universite-lyon.fr/
- Léon Bérard cancer center http://oncora1.lyon.fnclcc.fr
- CREATIS CNRS laboratory http://www.creatis.insa-lyon.fr
#include "vvSlicerManagerCommand.h"
#include "vvInteractorStyleNavigator.h"
#include "vvLandmarks.h"
-#include "vvImageReader.h"
-#include "vvImageReader.h"
#include "vvMesh.h"
#include "vvImageMapToWLColors.h"
#include "vvBlendImageActor.h"
#include <vtkLODActor.h>
#include <vtkPointData.h>
#include <vtksys/SystemTools.hxx>
+#include <vtkCamera.h>
+
+#include <qfileinfo.h>
//----------------------------------------------------------------------------
vvSlicerManager::vvSlicerManager(int numberOfSlicers)
mFusionName = "";
mVFId = "";
mLastError = "";
- mType = UNDEFINEDIMAGETYPE;
+ mType = vvImageReader::UNDEFINEDIMAGETYPE;
mColorMap = 0;
mPreset = 0;
mOverlayColor = 130;
- mFusionOpacity = 70;
+ mFusionOpacity = 30;
+ mFusionThresOpacity = 1;
mFusionColorMap = 3;
mFusionWindow = 1000;
mFusionLevel = 1000;
- mReader = NULL;
- mImage = NULL;
- mVF=NULL;
- mVectorReader = NULL;
- mOverlayReader = NULL;
- mFusionReader = NULL;
mLandmarks = NULL;
mLinkedId.resize(0);
- for ( int i = 0; i < numberOfSlicers; i++) {
- vvSlicer *slicer = vvSlicer::New();
- mSlicers.push_back(slicer);
- }
+ for ( int i = 0; i < numberOfSlicers; i++)
+ mSlicers.push_back(vtkSmartPointer<vvSlicer>::New());
+
mPreviousSlice.resize(numberOfSlicers);
mPreviousTSlice.resize(numberOfSlicers);
}
//----------------------------------------------------------------------------
vvSlicerManager::~vvSlicerManager()
{
- for ( unsigned int i = 0; i < mSlicers.size(); i++)
- {
- if (mSlicers[i] != NULL)
- mSlicers[i]->Delete();
- }
- if (mReader)
- {
- delete mReader;
- }
- if (mVectorReader)
- {
- delete mVectorReader;
- }
- if (mOverlayReader)
- {
- delete mOverlayReader;
- }
- if (mFusionReader)
- {
- delete mFusionReader;
- }
if (mLandmarks)
delete mLandmarks;
}
//------------------------------------------------------------------------------
-void vvSlicerManager::SetFilename(std::string f) {
- mFileName = f;
+void vvSlicerManager::SetFilename(std::string filename, int number)
+{
+ mFileName = filename;
+ mFileName = vtksys::SystemTools::GetFilenameName(mFileName);
+ mBaseFileName = vtksys::SystemTools::GetFilenameName(vtksys::SystemTools::GetFilenameWithoutLastExtension(mFileName));
+ mBaseFileNameNumber = number;
+
+ mFileName = mBaseFileName;
+ if (number != 0) {
+ mFileName.append("_"+clitk::toString(number));
+ }
+ mFileName.append(vtksys::SystemTools::GetFilenameLastExtension(filename));
+
for(unsigned int i=0; i<mSlicers.size(); i++) {
- mSlicers[i]->SetFileName(f);
+ mSlicers[i]->SetFileName(mFileName);//vtksys::SystemTools::GetFilenameWithoutLastExtension(filename));
}
+
}
//------------------------------------------------------------------------------
//----------------------------------------------------------------------------
void vvSlicerManager::AddContour(vvMesh::Pointer contour,bool propagate)
{
- for ( unsigned int i = 0; i < mSlicers.size(); i++)
- {
- mSlicers[i]->AddContour(contour,propagate);
- }
+ for ( unsigned int i = 0; i < mSlicers.size(); i++) {
+ mSlicers[i]->AddContour(contour,propagate);
+ }
}
//----------------------------------------------------------------------------
}
//----------------------------------------------------------------------------
+//----------------------------------------------------------------------------
+std::string vvSlicerManager::GetListOfAbsoluteFilePathInOneString(const std::string &actorType)
+{
+ vvImageReader *reader = NULL;
+
+ if(actorType=="image")
+ reader = mReader;
+ else if(actorType=="overlay")
+ reader = mOverlayReader;
+ else if(actorType=="fusion")
+ reader = mFusionReader;
+ else if(actorType=="vector")
+ reader = mVectorReader;
+
+ if(!reader)
+ return "";
+
+ std::string list;
+ for(unsigned int i=0; i<reader->GetInputFilenames().size(); i++){
+ QFileInfo fileinfo(reader->GetInputFilenames()[i].c_str()); //Do not show the path
+ if(i)
+ list += '\n';
+ list += fileinfo.absoluteFilePath().toStdString();
+ }
+ return list;
+}
+//----------------------------------------------------------------------------
+
//----------------------------------------------------------------------------
-bool vvSlicerManager::SetImage(std::string filename, LoadedImageType type, int n)
+bool vvSlicerManager::SetImage(std::string filename, vvImageReader::LoadedImageType type, int n, unsigned int slice)
{
- mFileName = filename;
mType = type;
- if (mReader == NULL)
- mReader = new vvImageReader;
+ if (mReader.IsNull())
+ mReader = vvImageReader::New();
std::vector<std::string> filenames;
filenames.push_back(filename);
mReader->SetInputFilenames(filenames);
+ mReader->SetSlice(slice); // Only used for SLICED type
mReader->Update(type);
- mFileName = vtksys::SystemTools::GetFilenameName(mFileName);
- mBaseFileName = vtksys::SystemTools::GetFilenameName(vtksys::SystemTools::GetFilenameWithoutLastExtension(mFileName));
- // DD(mBaseFileName);
- mBaseFileNameNumber = n;
+ SetFilename(filename, n);
+ // mFileName = vtksys::SystemTools::GetFilenameName(mFileName);
+ //mBaseFileName = vtksys::SystemTools::GetFilenameName(vtksys::SystemTools::GetFilenameWithoutLastExtension(mFileName));
+ //mBaseFileNameNumber = n;
- if (mReader->GetLastError().size() == 0)
- {
- mImage=mReader->GetOutput();
- for ( unsigned int i = 0; i < mSlicers.size(); i++)
- {
- mSlicers[i]->SetFileName(vtksys::SystemTools::GetFilenameWithoutLastExtension(filename));
- mSlicers[i]->SetImage(mReader->GetOutput());
- // DD(mSlicers[i]->GetFileName());
- }
+ if (mReader->GetLastError().size() == 0) {
+ mImage=mReader->GetOutput();
+ for ( unsigned int i = 0; i < mSlicers.size(); i++) {
+ mSlicers[i]->SetFileName(vtksys::SystemTools::GetFilenameWithoutLastExtension(filename));
+ mSlicers[i]->SetImage(mReader->GetOutput());
}
- else
- {
- mLastError = mReader->GetLastError();
- return false;
- }
- if (n!=0) {
- // DD(mFileName);
- mFileName.append("_"+clitk::toString(n));
+ } else {
+ mLastError = mReader->GetLastError();
+ return false;
}
+ // if (n!=0) {
+ // mFileName.append("_"+clitk::toString(n));
+ // }
return true;
}
//----------------------------------------------------------------------------
void vvSlicerManager::SetImage(vvImage::Pointer image)
{
mImage=image;
- for (unsigned int i = 0; i < mSlicers.size();i++)
- {
- mSlicers[i]->SetImage(image);
- }
+ for (unsigned int i = 0; i < mSlicers.size(); i++) {
+ mSlicers[i]->SetImage(image);
+ }
}
//----------------------------------------------------------------------------
//----------------------------------------------------------------------------
-bool vvSlicerManager::SetImages(std::vector<std::string> filenames,LoadedImageType type, int n)
+bool vvSlicerManager::SetImages(std::vector<std::string> filenames, vvImageReader::LoadedImageType type, int n)
{
mType = type;
std::string fileWithoutExtension = vtksys::SystemTools::GetFilenameWithoutExtension(filenames[0]);
- if (type == DICOM)
+ if (type == vvImageReader::DICOM)
fileWithoutExtension += "_dicom";
- else if (type == MERGED)
+ else if (type == vvImageReader::MERGED)
fileWithoutExtension += "_merged";
- else if (type == MERGEDWITHTIME)
+ else if (type == vvImageReader::MERGEDWITHTIME)
fileWithoutExtension += "_merged_wt";
mFileName = vtksys::SystemTools::GetFilenameName(mFileName);
mFileName = fileWithoutExtension + vtksys::SystemTools::GetFilenameExtension(filenames[0]);
- if (mReader == NULL)
- mReader = new vvImageReader;
+ if (mReader.IsNull())
+ mReader = vvImageReader::New();
mReader->SetInputFilenames(filenames);
mReader->Update(type);
mBaseFileName = vtksys::SystemTools::GetFilenameName(vtksys::SystemTools::GetFilenameWithoutLastExtension(mFileName));
- // DD(mBaseFileName);
mBaseFileNameNumber = n;
- if (mReader->GetLastError().size() == 0)
- {
- mImage=mReader->GetOutput();
- for ( unsigned int i = 0; i < mSlicers.size(); i++)
- {
- mSlicers[i]->SetFileName(fileWithoutExtension);
- mSlicers[i]->SetImage(mReader->GetOutput());
- }
- }
- else
- {
- mLastError = mReader->GetLastError();
- return false;
+ if (mReader->GetLastError().size() == 0) {
+ mImage=mReader->GetOutput();
+ for ( unsigned int i = 0; i < mSlicers.size(); i++) {
+ mSlicers[i]->SetFileName(fileWithoutExtension);
+ mSlicers[i]->SetImage(mReader->GetOutput());
}
+ } else {
+ mLastError = mReader->GetLastError();
+ return false;
+ }
if (n!=0) {
- // DD(mFileName);
mFileName.append("_"+clitk::toString(n));
- // DD(mFileName);
}
return true;
}
{
mOverlayName = filename;
mOverlayComponent = component;
- if (dim > mImage->GetNumberOfDimensions())
- {
- mLastError = " Overlay dimension cannot be greater then reference image!";
- return false;
- }
- if (mOverlayReader == NULL)
- mOverlayReader = new vvImageReader;
+ if (dim > mImage->GetNumberOfDimensions()) {
+ mLastError = " Overlay dimension cannot be greater then reference image!";
+ return false;
+ }
+ if (mOverlayReader.IsNull())
+ mOverlayReader = vvImageReader::New();
std::vector<std::string> filenames;
filenames.push_back(filename);
mOverlayReader->SetInputFilenames(filenames);
mOverlayReader->Update(mImage->GetNumberOfDimensions(),component.c_str(),mType);
- if (mOverlayReader->GetLastError().size() == 0)
- {
- for ( unsigned int i = 0; i < mSlicers.size(); i++)
- {
- mSlicers[i]->SetOverlay(mOverlayReader->GetOutput());
- }
- }
- else
- {
- mLastError = mOverlayReader->GetLastError();
- return false;
+ if (mOverlayReader->GetLastError().size() == 0) {
+ for ( unsigned int i = 0; i < mSlicers.size(); i++) {
+ mSlicers[i]->SetOverlay(mOverlayReader->GetOutput());
}
+ } else {
+ mLastError = mOverlayReader->GetLastError();
+ return false;
+ }
return true;
}
//----------------------------------------------------------------------------
{
mFusionName = filename;
mFusionComponent = component;
- if (dim > mImage->GetNumberOfDimensions())
- {
- mLastError = " Overlay dimension cannot be greater then reference image!";
- return false;
- }
- if (mFusionReader == NULL)
- mFusionReader = new vvImageReader;
+ if (dim > mImage->GetNumberOfDimensions()) {
+ mLastError = " Overlay dimension cannot be greater then reference image!";
+ return false;
+ }
+ if (mFusionReader.IsNull())
+ mFusionReader = vvImageReader::New();
std::vector<std::string> filenames;
filenames.push_back(filename);
mFusionReader->SetInputFilenames(filenames);
mFusionReader->Update(mImage->GetNumberOfDimensions(),component.c_str(),mType);
- if (mFusionReader->GetLastError().size() == 0)
- {
- for ( unsigned int i = 0; i < mSlicers.size(); i++)
- {
- mSlicers[i]->SetFusion(mFusionReader->GetOutput());
- }
- }
- else
- {
- mLastError = mFusionReader->GetLastError();
- return false;
+ if (mFusionReader->GetLastError().size() == 0) {
+ for ( unsigned int i = 0; i < mSlicers.size(); i++) {
+ mSlicers[i]->SetFusion(mFusionReader->GetOutput());
}
+ } else {
+ mLastError = mFusionReader->GetLastError();
+ return false;
+ }
double *fusRange = mFusionReader->GetOutput()->GetVTKImages()[0]->GetScalarRange();
mFusionLevel = (fusRange[0]+fusRange[1])/2;
mFusionWindow = fusRange[1]-fusRange[0];
+
return true;
}
//----------------------------------------------------------------------------
//----------------------------------------------------------------------------
bool vvSlicerManager::SetVF(std::string filename)
{
- if (mVectorReader == NULL)
- mVectorReader = new vvImageReader;
+ if (mVectorReader.IsNull())
+ mVectorReader = vvImageReader::New();
mVectorReader->SetInputFilename(filename);
- mVectorReader->Update(VECTORFIELD);
- if (mVectorReader->GetLastError().size() != 0)
- {
- mLastError = mVectorReader->GetLastError();
- return false;
- }
+
+ if (mType == vvImageReader::IMAGEWITHTIME)
+ mVectorReader->Update(vvImageReader::VECTORFIELDWITHTIME);
else
+ mVectorReader->Update(vvImageReader::VECTORFIELD);
+ if (mVectorReader->GetLastError().size() != 0) {
+ mLastError = mVectorReader->GetLastError();
+ return false;
+ } else
return SetVF(mVectorReader->GetOutput(),filename);
}
//----------------------------------------------------------------------------
return false;
}
if (vf->GetNumberOfDimensions() == 4) {
- // DD(vf->GetSpacing()[3]);
- // DD(mImage->GetSpacing()[3]);
- // DD(vf->GetOrigin()[3]);
- // DD(mImage->GetOrigin()[3]);
if (vf->GetSpacing()[3] != mImage->GetSpacing()[3]) {
mLastError = "Sorry, vector field time spacing cannot be different from time spacing of the reference image.";
return false;
//----------------------------------------------------------------------------
-//----------------------------------------------------------------------------
-void vvSlicerManager::SetExtractedImage(std::string filename,vvImage::Pointer image, int slice)
-{
- mFileName = filename;
- mImage = vvImage::New();
- if (image->GetNumberOfDimensions() == 4)
- {
- mImage->AddImage(image->GetVTKImages()[slice]);
- for ( unsigned int i = 0; i < mSlicers.size(); i++)
- {
- mSlicers[i]->SetFileName(vtksys::SystemTools::GetFilenameWithoutLastExtension(filename));
- mSlicers[i]->SetImage(mImage);
- }
- }
- else
- {
- vtkImageClip* clipper = vtkImageClip::New();
- int extent[6];
- image->GetVTKImages()[0]->GetWholeExtent(extent);
- clipper->SetInput(image->GetVTKImages()[0]);
- clipper->SetOutputWholeExtent(extent[0],extent[1],extent[2],extent[3],slice,slice);
- clipper->Update();
- mImage->AddImage(clipper->GetOutput());
- for ( unsigned int i = 0; i < mSlicers.size(); i++)
- {
- mSlicers[i]->SetFileName(vtksys::SystemTools::GetFilenameWithoutLastExtension(filename));
- mSlicers[i]->SetImage(mImage);
- }
- clipper->Delete();
- }
-}
-//----------------------------------------------------------------------------
-
-
//----------------------------------------------------------------------------
vvSlicer* vvSlicerManager::GetSlicer(int i)
{
// mSlicers[i]->GetRenderWindow()->GetInteractor()->
// GetInteractorStyle()->AddObserver(vtkCommand::LeftButtonReleaseEvent, smc);
mSlicers[i]->GetRenderWindow()->GetInteractor()->
- GetInteractorStyle()->AddObserver(vtkCommand::EndPickEvent, smc);
+ GetInteractorStyle()->AddObserver(vtkCommand::EndPickEvent, smc);
+ mSlicers[i]->GetRenderWindow()->GetInteractor()->
+ GetInteractorStyle()->AddObserver(vtkCommand::EndInteractionEvent, smc);
smc->Delete();
}
//----------------------------------------------------------------------------
//----------------------------------------------------------------------------
-void vvSlicerManager::LeftButtonReleaseEvent(int slicer) {
+void vvSlicerManager::LeftButtonReleaseEvent(int slicer)
+{
emit LeftButtonReleaseSignal(slicer);
}
//----------------------------------------------------------------------------
+//----------------------------------------------------------------------------
+void vvSlicerManager::SetSliceOrientation(int slicer, int orientation)
+{
+ mSlicers[slicer]->SetSliceOrientation(orientation);
+ emit UpdateOrientation(slicer, orientation);
+}
+//----------------------------------------------------------------------------
//----------------------------------------------------------------------------
void vvSlicerManager::SetTSlice(int slice)
slice = mSlicers[0]->GetTMax();
if (mLandmarks)
mLandmarks->SetTime(slice);
- for ( unsigned int i = 0; i < mSlicers.size(); i++)
- {
- if (slice != mSlicers[i]->GetTSlice()) {
- mSlicers[i]->SetTSlice(slice);
- if (mSlicers[i]->GetImageActor()->GetVisibility())
- UpdateTSlice(i);
- }
+ for ( unsigned int i = 0; i < mSlicers.size(); i++) {
+ if (slice != mSlicers[i]->GetTSlice()) {
+ mSlicers[i]->SetTSlice(slice);
+ UpdateTSlice(i);
}
+ }
}
//----------------------------------------------------------------------------
t++;
if (t > mSlicers[0]->GetTMax())
t = 0;
- // DD("SetNextTSlice");
-// DD(originating_slicer);
-// DD(t);
+ //std::cout << "vvSlicerManager::SetNextTSlice" << std::endl;
emit UpdateTSlice(originating_slicer,t);
}
//----------------------------------------------------------------------------
t--;
if (t < 0)
t = mSlicers[0]->GetTMax();
+ //std::cout << "vvSlicerManager::SetPreviousTSlice" << std::endl;
emit UpdateTSlice(originating_slicer,t);
}
//----------------------------------------------------------------------------
void vvSlicerManager::ToggleInterpolation()
{
bool interpolate=!(mSlicers[0]->GetImageActor()->GetInterpolate());
- for ( unsigned int i = 0; i < mSlicers.size(); i++)
- {
- mSlicers[i]->GetImageActor()->SetInterpolate(interpolate);
- }
+ for ( unsigned int i = 0; i < mSlicers.size(); i++) {
+ mSlicers[i]->GetImageActor()->SetInterpolate(interpolate);
+ if (mSlicers[i]->GetOverlayActor())
+ mSlicers[i]->GetOverlayActor()->SetInterpolate(interpolate);
+ if (mSlicers[i]->GetFusionActor())
+ mSlicers[i]->GetFusionActor()->SetInterpolate(interpolate);
+ }
}
//----------------------------------------------------------------------------
if (mSlicers[slicer]->GetTSlice() == tslice) return;
mSlicers[slicer]->SetTSlice(tslice);
- if (mSlicers[slicer]->GetImageActor()->GetVisibility())
- UpdateTSlice(slicer);
+ UpdateTSlice(slicer);
}
//----------------------------------------------------------------------------
//----------------------------------------------------------------------------
void vvSlicerManager::SetColorWindow(double s)
{
- for ( unsigned int i = 0; i < mSlicers.size(); i++)
- {
- mSlicers[i]->SetColorWindow(s);
- }
+ for ( unsigned int i = 0; i < mSlicers.size(); i++) {
+ mSlicers[i]->SetColorWindow(s);
+ }
}
//----------------------------------------------------------------------------
-
//----------------------------------------------------------------------------
void vvSlicerManager::SetColorLevel(double s)
{
- for ( unsigned int i = 0; i < mSlicers.size(); i++)
- {
- mSlicers[i]->SetColorLevel(s);
- }
+ for ( unsigned int i = 0; i < mSlicers.size(); i++) {
+ mSlicers[i]->SetColorLevel(s);
+ }
}
//----------------------------------------------------------------------------
//----------------------------------------------------------------------------
-void vvSlicerManager::SetCursorVisibility(int s)
+void vvSlicerManager::SetOverlayColorWindow(double s)
{
- for ( unsigned int i = 0; i < mSlicers.size(); i++)
- {
- mSlicers[i]->SetCursorVisibility(s);
- }
+ for ( unsigned int i = 0; i < mSlicers.size(); i++) {
+ mSlicers[i]->SetOverlayColorWindow(s);
+ }
+}
+//----------------------------------------------------------------------------
+
+//----------------------------------------------------------------------------
+void vvSlicerManager::SetOverlayColorLevel(double s)
+{
+ for ( unsigned int i = 0; i < mSlicers.size(); i++) {
+ mSlicers[i]->SetOverlayColorLevel(s);
+ }
}
//----------------------------------------------------------------------------
+//----------------------------------------------------------------------------
+void vvSlicerManager::SetLinkOverlayWindowLevel(bool b)
+{
+ for ( unsigned int i = 0; i < mSlicers.size(); i++) {
+ mSlicers[i]->SetLinkOverlayWindowLevel(b);
+ }
+}
+//----------------------------------------------------------------------------
+
+//----------------------------------------------------------------------------
+void vvSlicerManager::SetCursorAndCornerAnnotationVisibility(int s)
+{
+ for ( unsigned int i = 0; i < mSlicers.size(); i++) {
+ mSlicers[i]->SetCursorVisibility(s);
+ mSlicers[i]->SetCornerAnnotationVisibility(s);
+ }
+}
+//----------------------------------------------------------------------------
//----------------------------------------------------------------------------
void vvSlicerManager::SetOpacity(int i, double factor)
//----------------------------------------------------------------------------
void vvSlicerManager::UpdateViews(int current,int slicer)
{
- // DD("UpdateViews");
-// DD(current);
-// DD(slicer);
-
double x = (mSlicers[slicer]->GetCurrentPosition()[0] - mSlicers[slicer]->GetInput()->GetOrigin()[0])
/mSlicers[slicer]->GetInput()->GetSpacing()[0];
double y = (mSlicers[slicer]->GetCurrentPosition()[1] - mSlicers[slicer]->GetInput()->GetOrigin()[1])
y >= mSlicers[slicer]->GetInput()->GetWholeExtent()[2] &&
y <= mSlicers[slicer]->GetInput()->GetWholeExtent()[3] &&
z >= mSlicers[slicer]->GetInput()->GetWholeExtent()[4] &&
- z <= mSlicers[slicer]->GetInput()->GetWholeExtent()[5])
- {
- mSlicers[slicer]->UpdateCursorPosition();
- mSlicers[slicer]->SetCursorColor(10,212,255);
+ z <= mSlicers[slicer]->GetInput()->GetWholeExtent()[5]) {
+ mSlicers[slicer]->UpdateCursorPosition();
+ mSlicers[slicer]->SetCursorColor(10,212,255);
+
+ switch (mSlicers[slicer]->GetSliceOrientation()) {
+ case vtkImageViewer2::SLICE_ORIENTATION_XY:
+ if (mSlicers[slicer]->GetSlice() != (int)floor(z))
+ mSlicers[slicer]->SetSlice((int)floor(z));
+ break;
+
+ case vtkImageViewer2::SLICE_ORIENTATION_XZ:
+ if (mSlicers[slicer]->GetSlice() != (int)floor(y))
+ mSlicers[slicer]->SetSlice((int)floor(y));
+ break;
- switch (mSlicers[slicer]->GetSliceOrientation())
- {
+ case vtkImageViewer2::SLICE_ORIENTATION_YZ:
+ if (mSlicers[slicer]->GetSlice() != (int)floor(x))
+ mSlicers[slicer]->SetSlice((int)floor(x));
+ break;
+ }
+ mSlicers[slicer]->Render();
+
+ for ( unsigned int i = 0; i < mSlicers.size(); i++) {
+ if (i != (unsigned int)slicer
+ && mSlicers[i]->GetRenderer()->GetDraw()
+ && mSlicers[i]->GetRenderWindow()->GetSize()[0] > 2
+ && mSlicers[i]->GetRenderWindow()->GetSize()[1] > 2) {
+ mSlicers[i]->SetCurrentPosition(mSlicers[slicer]->GetCurrentPosition()[0],
+ mSlicers[slicer]->GetCurrentPosition()[1],
+ mSlicers[slicer]->GetCurrentPosition()[2],
+ mSlicers[slicer]->GetTSlice());
+ mSlicers[i]->UpdateCursorPosition();
+ if (current) { //do not display corner annotation if image is the one picked
+ mSlicers[i]->SetCurrentPosition(-VTK_DOUBLE_MAX,-VTK_DOUBLE_MAX,
+ -VTK_DOUBLE_MAX, mSlicers[slicer]->GetTSlice());
+ mSlicers[i]->SetCursorColor(255,10,212);
+ } else {
+ mSlicers[i]->SetCursorColor(150,10,282);
+ }
+ switch (mSlicers[i]->GetSliceOrientation()) {
case vtkImageViewer2::SLICE_ORIENTATION_XY:
- if (mSlicers[slicer]->GetSlice() == (int)floor(z))
- mSlicers[slicer]->Render();
- else
- mSlicers[slicer]->SetSlice((int)floor(z));
- break;
+ if (mSlicers[i]->GetSlice() != (int)floor(z))
+ mSlicers[i]->SetSlice((int)floor(z));
+ break;
case vtkImageViewer2::SLICE_ORIENTATION_XZ:
- if (mSlicers[slicer]->GetSlice() == (int)floor(y))
- mSlicers[slicer]->Render();
- else
- mSlicers[slicer]->SetSlice((int)floor(y));
- break;
+ if (mSlicers[i]->GetSlice() != (int)floor(y))
+ mSlicers[i]->SetSlice((int)floor(y));
+ break;
case vtkImageViewer2::SLICE_ORIENTATION_YZ:
- if (mSlicers[slicer]->GetSlice() == (int)floor(x))
- mSlicers[slicer]->Render();
- else
- mSlicers[slicer]->SetSlice((int)floor(x));
- break;
- }
-
- for ( unsigned int i = 0; i < mSlicers.size(); i++)
- {
- if (i != (unsigned int)slicer && mSlicers[i]->GetImageActor()->GetVisibility()
- && mSlicers[i]->GetRenderWindow()->GetSize()[0] > 2
- && mSlicers[i]->GetRenderWindow()->GetSize()[1] > 2)
- {
- mSlicers[i]->SetCurrentPosition(mSlicers[slicer]->GetCurrentPosition()[0],
- mSlicers[slicer]->GetCurrentPosition()[1],
- mSlicers[slicer]->GetCurrentPosition()[2],
- mSlicers[slicer]->GetTSlice());
- mSlicers[i]->UpdateCursorPosition();
- if (current) //do not display corner annotation if image is the one picked
- {
- mSlicers[i]->SetCurrentPosition(-VTK_DOUBLE_MAX,-VTK_DOUBLE_MAX,
- -VTK_DOUBLE_MAX, mSlicers[slicer]->GetTSlice());
- mSlicers[i]->SetCursorColor(255,10,212);
- }
- else
- {
- mSlicers[i]->SetCursorColor(150,10,282);
- }
- switch (mSlicers[i]->GetSliceOrientation())
- {
- case vtkImageViewer2::SLICE_ORIENTATION_XY:
- if (mSlicers[i]->GetSlice() == (int)floor(z))
- mSlicers[i]->Render();
- else
- mSlicers[i]->SetSlice((int)floor(z));
- break;
-
- case vtkImageViewer2::SLICE_ORIENTATION_XZ:
- if (mSlicers[i]->GetSlice() == (int)floor(y))
- mSlicers[i]->Render();
- else
- mSlicers[i]->SetSlice((int)floor(y));
- break;
-
- case vtkImageViewer2::SLICE_ORIENTATION_YZ:
- if (mSlicers[i]->GetSlice() == (int)floor(x))
- mSlicers[i]->Render();
- else
- mSlicers[i]->SetSlice((int)floor(x));
- break;
- }
- // DD("UpdateViews::");
- // DD(i);
- UpdateSlice(i);
- UpdateTSlice(i);
- }
+ if (mSlicers[i]->GetSlice() != (int)floor(x))
+ mSlicers[i]->SetSlice((int)floor(x));
+ break;
}
+
+ mSlicers[i]->Render();
+
+ UpdateSlice(i);
+ UpdateTSlice(i);
+ }
}
+ }
}
//----------------------------------------------------------------------------
y >= mSlicers[slicer]->GetInput()->GetWholeExtent()[2] &&
y <= mSlicers[slicer]->GetInput()->GetWholeExtent()[3] &&
z >= mSlicers[slicer]->GetInput()->GetWholeExtent()[4] &&
- z <= mSlicers[slicer]->GetInput()->GetWholeExtent()[5])
- {
- for (std::list<std::string>::const_iterator i = mLinkedId.begin(); i != mLinkedId.end(); i++)
- {
- emit UpdateLinkManager(*i, slicer,mSlicers[slicer]->GetCurrentPosition()[0],
- mSlicers[slicer]->GetCurrentPosition()[1],
- mSlicers[slicer]->GetCurrentPosition()[2],mSlicers[slicer]->GetTSlice());
- }
+ z <= mSlicers[slicer]->GetInput()->GetWholeExtent()[5]) {
+ for (std::list<std::string>::const_iterator i = mLinkedId.begin(); i != mLinkedId.end(); i++) {
+ emit UpdateLinkManager(*i, slicer,mSlicers[slicer]->GetCurrentPosition()[0],
+ mSlicers[slicer]->GetCurrentPosition()[1],
+ mSlicers[slicer]->GetCurrentPosition()[2],mSlicers[slicer]->GetTSlice());
}
+ }
}
//----------------------------------------------------------------------------
+//----------------------------------------------------------------------------
+void vvSlicerManager::UpdateLinkedNavigation(vvSlicer *refSlicer, bool bPropagate)
+{
+ vtkCamera *refCam = refSlicer->GetRenderer()->GetActiveCamera();
+ double refPosition[3], refFocal[3];
+ refCam->GetPosition(refPosition);
+ refCam->GetFocalPoint(refFocal);
+
+ for ( unsigned int i = 0; i < mSlicers.size(); i++) {
+ vtkCamera *camera = mSlicers[i]->GetRenderer()->GetActiveCamera();
+ camera->SetParallelScale(refCam->GetParallelScale());
+
+ double position[3], focal[3];
+ camera->GetPosition(position);
+ camera->GetFocalPoint(focal);
+
+ if(refSlicer->GetSliceOrientation()==mSlicers[i]->GetSliceOrientation()) {
+ for(int i=0; i<3; i++) {
+ position[i] = refPosition[i];
+ focal[i] = refFocal[i];
+ }
+ }
+
+ if(refSlicer->GetSliceOrientation()==vtkImageViewer2::SLICE_ORIENTATION_XY) {
+ if(mSlicers[i]->GetSliceOrientation()==vtkImageViewer2::SLICE_ORIENTATION_XZ) {
+ position[0] = refPosition[0];
+ focal[0] = refFocal[0];
+ }
+ if(mSlicers[i]->GetSliceOrientation()==vtkImageViewer2::SLICE_ORIENTATION_YZ) {
+ position[1] = refPosition[1];
+ focal[1] = refFocal[1];
+ }
+ }
+
+ if(refSlicer->GetSliceOrientation()==vtkImageViewer2::SLICE_ORIENTATION_XZ) {
+ if(mSlicers[i]->GetSliceOrientation()==vtkImageViewer2::SLICE_ORIENTATION_YZ) {
+ position[2] = refPosition[2];
+ focal[2] = refFocal[2];
+ }
+ if(mSlicers[i]->GetSliceOrientation()==vtkImageViewer2::SLICE_ORIENTATION_XY) {
+ position[0] = refPosition[0];
+ focal[0] = refFocal[0];
+ }
+ }
+
+ if(refSlicer->GetSliceOrientation()==vtkImageViewer2::SLICE_ORIENTATION_YZ) {
+ if(mSlicers[i]->GetSliceOrientation()==vtkImageViewer2::SLICE_ORIENTATION_XY) {
+ position[1] = refPosition[1];
+ focal[1] = refFocal[1];
+ }
+ if(mSlicers[i]->GetSliceOrientation()==vtkImageViewer2::SLICE_ORIENTATION_XZ) {
+ position[2] = refPosition[2];
+ focal[2] = refFocal[2];
+ }
+ }
+
+ camera->SetFocalPoint(focal);
+ camera->SetPosition(position);
+
+ //Fix for bug #243
+ mSlicers[i]->ForceUpdateDisplayExtent();
+ }
+
+ Render();
+ if(bPropagate)
+ for (std::list<std::string>::const_iterator i = mLinkedId.begin(); i != mLinkedId.end(); i++)
+ emit UpdateLinkedNavigation(*i, this, refSlicer);
+}
+//----------------------------------------------------------------------------
//----------------------------------------------------------------------------
double vvSlicerManager::GetColorWindow()
}
//----------------------------------------------------------------------------
+//----------------------------------------------------------------------------
+double vvSlicerManager::GetOverlayColorWindow() const
+{
+ if (mSlicers.size())
+ return mSlicers[0]->GetOverlayColorWindow();
+ return -1;
+}
+//----------------------------------------------------------------------------
+
+//----------------------------------------------------------------------------
+double vvSlicerManager::GetOverlayColorLevel() const
+{
+ if (mSlicers.size())
+ return mSlicers[0]->GetOverlayColorLevel();
+ return -1;
+}
+//----------------------------------------------------------------------------
+
+//----------------------------------------------------------------------------
+bool vvSlicerManager::GetLinkOverlayWindowLevel() const
+{
+ if (mSlicers.size())
+ return mSlicers[0]->GetLinkOverlayWindowLevel();
+ return -1;
+}
+//----------------------------------------------------------------------------
+
+//------------------------------------------------------------------------------
+void vvSlicerManager::ResetTransformationToIdentity(const std::string actorType)
+{
+ if(actorType == "image")
+ this->GetImage()->GetTransform()->Identity();
+ else if(actorType == "overlay")
+ this->GetSlicer(0)->GetOverlay()->GetTransform()->Identity();
+ else if(actorType == "fusion")
+ this->GetSlicer(0)->GetFusion()->GetTransform()->Identity();
+ else if(actorType == "vf")
+ this->GetVF()->GetTransform()->Identity();
+ else
+ return;
+
+ for(int i=0; i< this->GetNumberOfSlicers(); i++){
+ this->GetSlicer(i)->ForceUpdateDisplayExtent();
+ this->GetSlicer(i)->ResetCamera();
+ this->GetSlicer(i)->Render();
+ }
+}
+//------------------------------------------------------------------------------
//----------------------------------------------------------------------------
void vvSlicerManager::Render()
{
- // DD("vvSlicerManager::Render");
- for ( unsigned int i = 0; i < mSlicers.size(); i++)
- {
- // DD(i);
- mSlicers[i]->Render();
- }
+ for ( unsigned int i = 0; i < mSlicers.size(); i++) {
+ mSlicers[i]->Render();
+ }
}
//----------------------------------------------------------------------------
{
mReader->Update(mType);
mImage=mReader->GetOutput();
- for ( unsigned int i = 0; i < mSlicers.size(); i++)
- {
- mSlicers[i]->SetImage(mImage);
- }
+ for ( unsigned int i = 0; i < mSlicers.size(); i++) {
+ mSlicers[i]->SetImage(mImage);
+ }
}
//----------------------------------------------------------------------------
void vvSlicerManager::ReloadFusion()
{
mFusionReader->Update();
- for ( unsigned int i = 0; i < mSlicers.size(); i++)
- {
- mSlicers[i]->SetFusion(mFusionReader->GetOutput());
- mSlicers[i]->Render();
- }
+ for ( unsigned int i = 0; i < mSlicers.size(); i++) {
+ mSlicers[i]->SetFusion(mFusionReader->GetOutput());
+ mSlicers[i]->Render();
+ }
}
//----------------------------------------------------------------------------
void vvSlicerManager::ReloadOverlay()
{
mOverlayReader->Update();
- for ( unsigned int i = 0; i < mSlicers.size(); i++)
- {
- mSlicers[i]->SetOverlay(mOverlayReader->GetOutput());
- mSlicers[i]->Render();
- }
+ for ( unsigned int i = 0; i < mSlicers.size(); i++) {
+ mSlicers[i]->SetOverlay(mOverlayReader->GetOutput());
+ mSlicers[i]->Render();
+ }
}
//----------------------------------------------------------------------------
//----------------------------------------------------------------------------
void vvSlicerManager::ReloadVF()
{
- mVectorReader->Update(VECTORFIELD); //deletes the old images through the VF::Init() function
+ mVectorReader->Update(vvImageReader::VECTORFIELD); //deletes the old images through the VF::Init() function
mVF=mVectorReader->GetOutput();
- for ( unsigned int i = 0; i < mSlicers.size(); i++)
- {
- mSlicers[i]->SetVF(mVF);
- mSlicers[i]->Render();
- }
+ for ( unsigned int i = 0; i < mSlicers.size(); i++) {
+ mSlicers[i]->SetVF(mVF);
+ mSlicers[i]->Render();
+ }
}
//----------------------------------------------------------------------------
//----------------------------------------------------------------------------
void vvSlicerManager::RemoveActor(const std::string& actor_type, int overlay_index)
{
- for (unsigned int i = 0; i < mSlicers.size();i++)
- {
- mSlicers[i]->RemoveActor(actor_type,overlay_index);
- }
- if (actor_type=="vector")
- {
- mVF=NULL;
- if (mVectorReader) {
- delete mVectorReader;
- mVectorReader=NULL;
- }
- }
+ if (actor_type =="overlay")
+ mOverlayReader = NULL;
+
+ if (actor_type =="fusion")
+ mFusionReader = NULL;
+
+ for (unsigned int i = 0; i < mSlicers.size(); i++)
+ mSlicers[i]->RemoveActor(actor_type,overlay_index);
+
+ if (actor_type=="vector") {
+ mVF=NULL;
+ mVectorReader=NULL;
+ }
}
//----------------------------------------------------------------------------
//----------------------------------------------------------------------------
void vvSlicerManager::RemoveActors()
{
- ///This method leaks a few objects. See RemoveActor for what a correct implementation would look like
- for ( unsigned int i = 0; i < mSlicers.size(); i++)
- {
- mSlicers[i]->SetDisplayMode(0);
- mSlicers[i]->GetRenderer()->RemoveActor(mSlicers[i]->GetImageActor());
- }
+ ///This method leaks a few objects. See RemoveActor for what a
+ ///correct implementation would look like
+ //DS -> probably due to the reader (now released in the
+ //RemoveActor() function. (I hope)
+ for ( unsigned int i = 0; i < mSlicers.size(); i++) {
+ mSlicers[i]->SetDisplayMode(0);
+ mSlicers[i]->GetRenderer()->RemoveActor(mSlicers[i]->GetImageActor());
+ }
}
//----------------------------------------------------------------------------
Y >= mSlicers[slicer]->GetInput()->GetWholeExtent()[2] &&
Y <= mSlicers[slicer]->GetInput()->GetWholeExtent()[3] &&
Z >= mSlicers[slicer]->GetInput()->GetWholeExtent()[4] &&
- Z <= mSlicers[slicer]->GetInput()->GetWholeExtent()[5])
- {
- value = mSlicers[slicer]->GetInput()->GetScalarComponentAsDouble(
- (int)floor(X),
- (int)floor(Y),
- (int)floor(Z),0);
- if (mSlicers[slicer]->GetVFActor() && mSlicers[slicer]->GetVFActor()->GetVisibility())
- {
- displayVec = 1;
- unsigned int currentTime = mSlicers[slicer]->GetTSlice();
- vtkImageData *vf = NULL;
-
- if (mSlicers[slicer]->GetVF()->GetVTKImages().size() > currentTime)
- vf = mSlicers[slicer]->GetVF()->GetVTKImages()[currentTime];
- else
- vf = mSlicers[slicer]->GetVF()->GetVTKImages()[0];
-
- if (vf)
- {
- double Xvf = (x - vf->GetOrigin()[0])/ vf->GetSpacing()[0];
- double Yvf = (y - vf->GetOrigin()[1])/ vf->GetSpacing()[1];
- double Zvf = (z - vf->GetOrigin()[2])/ vf->GetSpacing()[2];
- xVec = vf->GetScalarComponentAsDouble( (int)floor(Xvf), (int)floor(Yvf), (int)floor(Zvf),0);
- yVec = vf->GetScalarComponentAsDouble( (int)floor(Xvf), (int)floor(Yvf), (int)floor(Zvf),1);
- zVec = vf->GetScalarComponentAsDouble( (int)floor(Xvf), (int)floor(Yvf), (int)floor(Zvf),2);
- valueVec = sqrt(xVec*xVec + yVec*yVec + zVec*zVec);
- }
- }
- if (mSlicers[slicer]->GetOverlayActor() && mSlicers[slicer]->GetOverlayActor()->GetVisibility())
- {
- displayOver = 1;
- double Xover = (x - mSlicers[slicer]->GetOverlay()->GetOrigin()[0])
- /mSlicers[slicer]->GetOverlay()->GetSpacing()[0];
- double Yover = (y - mSlicers[slicer]->GetOverlay()->GetOrigin()[1])
- /mSlicers[slicer]->GetOverlay()->GetSpacing()[1];
- double Zover = (z - mSlicers[slicer]->GetOverlay()->GetOrigin()[2])
- /mSlicers[slicer]->GetOverlay()->GetSpacing()[2];
- if (Xover >= mSlicers[slicer]->GetOverlayMapper()->GetInput()->GetWholeExtent()[0] &&
- Xover <= mSlicers[slicer]->GetOverlayMapper()->GetInput()->GetWholeExtent()[1] &&
- Yover >= mSlicers[slicer]->GetOverlayMapper()->GetInput()->GetWholeExtent()[2] &&
- Yover <= mSlicers[slicer]->GetOverlayMapper()->GetInput()->GetWholeExtent()[3] &&
- Zover >= mSlicers[slicer]->GetOverlayMapper()->GetInput()->GetWholeExtent()[4] &&
- Zover <= mSlicers[slicer]->GetOverlayMapper()->GetInput()->GetWholeExtent()[5])
- {
- valueOver = static_cast<vtkImageData*>(mSlicers[slicer]->GetOverlayMapper()->GetInput())->
- GetScalarComponentAsDouble(
- (int)floor(Xover),
- (int)floor(Yover),
- (int)floor(Zover),0);
- }
- }
- if (mSlicers[slicer]->GetFusionActor() && mSlicers[slicer]->GetFusionActor()->GetVisibility())
- {
- displayFus = 1;
- double Xfus = (x - mSlicers[slicer]->GetFusion()->GetOrigin()[0])
- /mSlicers[slicer]->GetFusion()->GetSpacing()[0];
- double Yfus = (y - mSlicers[slicer]->GetFusion()->GetOrigin()[1])
- /mSlicers[slicer]->GetFusion()->GetSpacing()[1];
- double Zfus = (z - mSlicers[slicer]->GetFusion()->GetOrigin()[2])
- /mSlicers[slicer]->GetFusion()->GetSpacing()[2];
- if (Xfus >= mSlicers[slicer]->GetFusionMapper()->GetInput()->GetWholeExtent()[0] &&
- Xfus <= mSlicers[slicer]->GetFusionMapper()->GetInput()->GetWholeExtent()[1] &&
- Yfus >= mSlicers[slicer]->GetFusionMapper()->GetInput()->GetWholeExtent()[2] &&
- Yfus <= mSlicers[slicer]->GetFusionMapper()->GetInput()->GetWholeExtent()[3] &&
- Zfus >= mSlicers[slicer]->GetFusionMapper()->GetInput()->GetWholeExtent()[4] &&
- Zfus <= mSlicers[slicer]->GetFusionMapper()->GetInput()->GetWholeExtent()[5])
- {
- valueFus = static_cast<vtkImageData*>(mSlicers[slicer]->GetFusionMapper()->GetInput())->
- GetScalarComponentAsDouble(
- (int)floor(Xfus),
- (int)floor(Yfus),
- (int)floor(Zfus),0);
- }
- }
- emit UpdatePosition(mSlicers[slicer]->GetCursorVisibility(),
- x,y,z,X,Y,Z,value);
- emit UpdateVector(displayVec,xVec, yVec, zVec, valueVec);
- emit UpdateOverlay(displayOver,valueOver,value);
- emit UpdateFusion(displayFus,valueFus);
- for (unsigned int i = 0; i < mSlicers.size(); i++)
- {
- if (mSlicers[i]->GetImageActor()->GetVisibility() == 1)
- emit UpdateWindows(i,mSlicers[i]->GetSliceOrientation(),mSlicers[i]->GetSlice());
- else
- emit UpdateWindows(i,-1,-1);
- }
+ Z <= mSlicers[slicer]->GetInput()->GetWholeExtent()[5]) {
+ value = this->GetScalarComponentAsDouble(mSlicers[slicer]->GetInput(), X, Y, Z);
+
+ if (mSlicers[slicer]->GetVFActor() ) {
+ displayVec = 1;
+ unsigned int currentTime = mSlicers[slicer]->GetTSlice();
+ vtkImageData *vf = NULL;
+
+ if (mSlicers[slicer]->GetVF()->GetVTKImages().size() > currentTime)
+ vf = mSlicers[slicer]->GetVF()->GetVTKImages()[currentTime];
+ else
+ vf = mSlicers[slicer]->GetVF()->GetVTKImages()[0];
+
+ if (vf) {
+ double Xvf = (x - vf->GetOrigin()[0])/ vf->GetSpacing()[0];
+ double Yvf = (y - vf->GetOrigin()[1])/ vf->GetSpacing()[1];
+ double Zvf = (z - vf->GetOrigin()[2])/ vf->GetSpacing()[2];
+ xVec = this->GetScalarComponentAsDouble( vf, Xvf, Yvf, Zvf, 0);
+ yVec = this->GetScalarComponentAsDouble( vf, Xvf, Yvf, Zvf, 1);
+ zVec = this->GetScalarComponentAsDouble( vf, Xvf, Yvf, Zvf, 2);
+ valueVec = sqrt(xVec*xVec + yVec*yVec + zVec*zVec);
+ }
}
+ if (mSlicers[slicer]->GetOverlayActor() ) {
+ displayOver = 1;
+ vtkImageData *overlay = dynamic_cast<vtkImageData*>(mSlicers[slicer]->GetOverlayMapper()->GetInput());
+ double Xover = (x - overlay->GetOrigin()[0]) / overlay->GetSpacing()[0];
+ double Yover = (y - overlay->GetOrigin()[1]) / overlay->GetSpacing()[1];
+ double Zover = (z - overlay->GetOrigin()[2]) / overlay->GetSpacing()[2];
+ valueOver = this->GetScalarComponentAsDouble(overlay, Xover, Yover, Zover);
+ }
+ if (mSlicers[slicer]->GetFusionActor() ) {
+ displayFus = 1;
+ vtkImageData *fusion = dynamic_cast<vtkImageData*>(mSlicers[slicer]->GetFusionMapper()->GetInput());
+ double Xover = (x - fusion->GetOrigin()[0]) / fusion->GetSpacing()[0];
+ double Yover = (y - fusion->GetOrigin()[1]) / fusion->GetSpacing()[1];
+ double Zover = (z - fusion->GetOrigin()[2]) / fusion->GetSpacing()[2];
+ valueFus = this->GetScalarComponentAsDouble(fusion, Xover, Yover, Zover);
+ }
+ emit UpdatePosition(mSlicers[slicer]->GetCursorVisibility(),
+ x,y,z,X,Y,Z,value);
+ emit UpdateVector(displayVec,xVec, yVec, zVec, valueVec);
+ emit UpdateOverlay(displayOver,valueOver,value);
+ emit UpdateFusion(displayFus,valueFus);
+ }
}
//----------------------------------------------------------------------------
//----------------------------------------------------------------------------
+//----------------------------------------------------------------------------
+void vvSlicerManager::Picked()
+{
+ emit currentPickedImageChanged(mId);
+}
+//----------------------------------------------------------------------------
+
+
//----------------------------------------------------------------------------
void vvSlicerManager::UpdateWindowLevel()
{
- emit WindowLevelChanged(mSlicers[0]->GetColorWindow(),mSlicers[0]->GetColorLevel(),mPreset,mColorMap);
+ emit WindowLevelChanged();
}
//----------------------------------------------------------------------------
//----------------------------------------------------------------------------
void vvSlicerManager::UpdateSlice(int slicer)
{
- // DD("vvSlicerManager::UpdateSlice emit UpdateSlice");
-// DD(slicer);
-// DD(mSlicers[slicer]->GetSlice());
if (mPreviousSlice[slicer] == mSlicers[slicer]->GetSlice()) {
//DD("============= NOTHING");
return;
}
+ //std::cout << "vvSlicerManager::UpdateSlice " << slicer << " " << mSlicers[slicer]->GetSlice() << std::endl;
emit UpdateSlice(slicer, mSlicers[slicer]->GetSlice());
mSlicers[slicer]->Render(); // DS <-- I add this, this could/must be the only Render ...
mPreviousSlice[slicer] = mSlicers[slicer]->GetSlice();
//----------------------------------------------------------------------------
void vvSlicerManager::UpdateTSlice(int slicer)
{
- // DD("vvSlicerManager::UpdateTSlice emit UpdateTSlice");
-// DD(slicer);
-// DD(mSlicers[slicer]->GetTSlice());
-// DD(mSlicers[slicer]->GetSlice());
- if (mPreviousSlice[slicer] == mSlicers[slicer]->GetSlice()) {
- if (mPreviousTSlice[slicer] == mSlicers[slicer]->GetTSlice()) {
+ int slice = mSlicers[slicer]->GetSlice();
+ int tslice = mSlicers[slicer]->GetTSlice();
+ if (mPreviousSlice[slicer] == slice) {
+ if (mPreviousTSlice[slicer] == tslice) {
// DD("************** NOTHING ***********");
return;
}
}
- mPreviousSlice[slicer] = mSlicers[slicer]->GetSlice();
- mPreviousTSlice[slicer] = mSlicers[slicer]->GetTSlice();
- emit UpdateTSlice(slicer,mSlicers[slicer]->GetTSlice());
+ mPreviousSlice[slicer] = slice;
+ mPreviousTSlice[slicer] = tslice;
+ //std::cout << "vvSlicerManager::UpdateTSlice " << slicer << " " << tslice << std::endl;
+ emit UpdateTSlice(slicer, tslice);
}
//----------------------------------------------------------------------------
void vvSlicerManager::UpdateSliceRange(int slicer)
{
emit UpdateSliceRange(slicer,
- mSlicers[slicer]->GetSliceRange()[0], mSlicers[slicer]->GetSliceRange()[1],
- 0,mSlicers[slicer]->GetTMax());
+ mSlicers[slicer]->GetSliceRange()[0], mSlicers[slicer]->GetSliceRange()[1],
+ 0,mSlicers[slicer]->GetTMax());
}
//----------------------------------------------------------------------------
double window = mSlicers[0]->GetColorWindow();
double level = mSlicers[0]->GetColorLevel();
- std::string component_type=mImage->GetScalarTypeAsString();
- switch (preset)
- {
- case 0:
- if (component_type == "unsigned_char")
- {
- window = 255;
- level = 127;
- }
- else if (component_type == "short")
- {
- window = 2000;
- level = 0;
- }
- else
- {
- double range[2];
- mImage->GetScalarRange(range);
- window = range[1] - range[0];
- level = (range[1] + range[0])* 0.5;
- }
- break;
- case 1:
- window = 2000;
- level = 0;
- break;
- case 2:
- window = 350;
- level = 60;
- break;
- case 3:
- window = 1500;
- level = -500;
- break;
- case 4:
- window = 1000;
- level = 500;
- break;
- case 5:
- window = 1;
- level = 0.5;
- break;
- case 6:
- break;
- case 7:
- window=1.;
- level=0.;
- break;
- }
+ std::string component_type=mImage->GetScalarTypeAsITKString();
+ switch (preset) {
+ case 0:
+ double range[2];
+ mImage->GetScalarRange(range);
+ window = range[1] - range[0];
+ level = (range[1] + range[0])* 0.5;
+ break;
+ case 1:
+ window = 2000;
+ level = 0;
+ break;
+ case 2:
+ window = 400;
+ level = 20;
+ break;
+ case 3:
+ window = 1500;
+ level = -500;
+ break;
+ case 4:
+ window = 1000;
+ level = 500;
+ break;
+ case 5:
+ window = 1;
+ level = 0.5;
+ break;
+ case 6:
+ break;
+ case 7:
+ window=1.;
+ level=0.;
+ break;
+ }
mPreset = preset;
this->SetColorWindow(window);
this->SetColorLevel(level);
//----------------------------------------------------------------------------
-void vvSlicerManager::SetLocalColorWindowing(const int slicer)
+void vvSlicerManager::SetLocalColorWindowing(const int slicer, const bool bCtrlKey)
{
double min, max;
- this->mSlicers[slicer]->GetExtremasAroundMousePointer(min, max);
- this->SetColorWindow(max-min);
- this->SetColorLevel(0.5*(min+max));
- this->UpdateWindowLevel();
+ int t = this->mSlicers[slicer]->GetTSlice();
+ if(bCtrlKey && this->mSlicers[slicer]->GetFusion()) {
+ this->mSlicers[slicer]->GetExtremasAroundMousePointer(min, max, this->mSlicers[slicer]->GetFusion()->GetVTKImages()[t]);
+ this->SetFusionWindow(max-min);
+ this->SetFusionLevel(0.5*(min+max));
+ this->SetColorMap(mColorMap);
+ }
+ else if(bCtrlKey && this->mSlicers[slicer]->GetOverlay()) {
+ this->mSlicers[slicer]->GetExtremasAroundMousePointer(min, max, this->mSlicers[slicer]->GetOverlay()->GetVTKImages()[t]);
+ if(this->mSlicers[slicer]->GetLinkOverlayWindowLevel()){
+ this->SetColorWindow(max-min);
+ this->SetColorLevel(0.5*(min+max));
+ } else {
+ this->SetOverlayColorWindow(max-min);
+ this->SetOverlayColorLevel(0.5*(min+max));
+ }
+ }
+ else {
+ this->mSlicers[slicer]->GetExtremasAroundMousePointer(min, max, this->mSlicers[slicer]->GetInput());
+ this->SetColorWindow(max-min);
+ this->SetColorLevel(0.5*(min+max));
+ this->SetPreset(6);
+ }
this->Render();
-}
-//----------------------------------------------------------------------------
-
-
-//----------------------------------------------------------------------------
-void vvSlicerManager::SetColorMap()
-{
- SetColorMap(mColorMap);
+ this->UpdateWindowLevel();
}
//----------------------------------------------------------------------------
double level = mSlicers[0]->GetWindowLevel()->GetLevel();
vtkLookupTable* LUT = static_cast<vtkLookupTable*>(mSlicers[0]->GetWindowLevel()->GetLookupTable());
- switch (colormap)
+ switch (colormap) {
+ case -1:
+ break;
+ case 0:
+ LUT = NULL;
+ break;
+ case 1:
+ if (LUT == NULL)
+ LUT = vtkLookupTable::New();
+ LUT->SetValueRange(0,1);
+ LUT->SetSaturationRange(1,1);
+ LUT->SetHueRange(0,0.18);
+ break;
+ case 2:
+ if (LUT == NULL)
+ LUT = vtkLookupTable::New();
+ LUT->SetValueRange(0,1);
+ LUT->SetSaturationRange(1,1);
+ LUT->SetHueRange(0.4,0.80);
+ break;
+ case 3:
+ if (LUT == NULL)
+ LUT = vtkLookupTable::New();
+ LUT->SetValueRange(0.5,1);
+ LUT->SetSaturationRange(1,1);
+ LUT->SetHueRange(0.666,0);
+ break;
+ case 4:
+ if (LUT == NULL)
+ LUT = vtkLookupTable::New();
+ LUT->SetValueRange(0,1);
+ LUT->SetSaturationRange(1,1);
+ LUT->SetHueRange(0,1);
+ break;
+ case 5:
+ if (LUT == NULL)
+ LUT = vtkLookupTable::New();
+ LUT->SetValueRange(0.,1);
+ LUT->SetSaturationRange(1,1);
+ LUT->SetHueRange(1,0.1);
+ //LUT->SetRampToLinear();
+ break;
+ }
+ if (LUT) {
+ LUT->SetTableRange(level-fabs(window)/2,level+fabs(window)/2);
+ LUT->Build();
+ }
+ vtkWindowLevelLookupTable* fusLUT = NULL;
+ if (mSlicers[0]->GetFusion()) { // && mFusionColorMap >= 0) {
+ fusLUT = vtkWindowLevelLookupTable::New();
+ double fusRange [2];
+ fusRange[0] = mFusionLevel - mFusionWindow/2;
+ fusRange[1] = mFusionLevel + mFusionWindow/2;
+ double* frange = mFusionReader->GetOutput()->GetVTKImages()[0]->GetScalarRange();
+ fusLUT->SetTableRange(frange);
+ fusLUT->SetValueRange(1,1);
+ fusLUT->SetSaturationRange(1,1);
+ fusLUT->SetAlphaRange(1, 1);
+ fusLUT->SetWindow(mFusionWindow);
+ fusLUT->SetLevel(mFusionLevel);
+ if (mFusionColorMap == 1)
+ fusLUT->SetHueRange(0,0.18);
+ else if (mFusionColorMap == 2)
+ fusLUT->SetHueRange(0.4,0.80);
+ else if (mFusionColorMap == 3)
{
- case -1:
- break;
- case 0:
- LUT = NULL;
- break;
- case 1:
- if (LUT == NULL)
- LUT = vtkLookupTable::New();
- LUT->SetValueRange(0,1);
- LUT->SetSaturationRange(1,1);
- LUT->SetHueRange(0,0.18);
- break;
- case 2:
- if (LUT == NULL)
- LUT = vtkLookupTable::New();
- LUT->SetValueRange(0,1);
- LUT->SetSaturationRange(1,1);
- LUT->SetHueRange(0.4,0.80);
- break;
- case 3:
- if (LUT == NULL)
- LUT = vtkLookupTable::New();
- LUT->SetValueRange(0,1);
- LUT->SetSaturationRange(1,1);
- LUT->SetHueRange(0,1);
- break;
- case 5:
- if (LUT == NULL)
- LUT = vtkLookupTable::New();
- LUT->SetValueRange(0.,1);
- LUT->SetSaturationRange(1,1);
- LUT->SetHueRange(1,0.1);
- //LUT->SetRampToLinear();
- break;
+ fusLUT->SetHueRange(0.666, 0);
+ fusLUT->SetValueRange(0.5, 1);
}
- if (LUT)
+ else if (mFusionColorMap == 4)
+ fusLUT->SetHueRange(0,1);
+ else if (mFusionColorMap <= 0)
{
- LUT->SetTableRange(level-fabs(window)/4,level+fabs(window)/4);
- LUT->Build();
+ fusLUT->SetValueRange(0,1);
+ fusLUT->SetSaturationRange(0,0);
}
- vtkLookupTable* fusLUT = NULL;
- if (mSlicers[0]->GetFusion())
- {
- fusLUT = vtkLookupTable::New();
- double fusRange [2];
- fusRange[0] = mFusionLevel - mFusionWindow/2;
- fusRange[1] = mFusionLevel + mFusionWindow/2;
- fusLUT->SetTableRange(fusRange[0],fusRange[1]);
- fusLUT->SetValueRange(1,1);
- fusLUT->SetSaturationRange(1,1);
- if (mFusionColorMap == 1)
- fusLUT->SetHueRange(0,0.18);
- else if (mFusionColorMap == 2)
- fusLUT->SetHueRange(0.4,0.80);
- else if (mFusionColorMap == 3)
- fusLUT->SetHueRange(0,1);
- fusLUT->Build();
- if (mFusionColorMap == 0)
- fusLUT = NULL;
+
+ fusLUT->ForceBuild();
+ double v[4];
+
+ // set color table transparency
+ double range_end = frange[0] + (double)mFusionThresOpacity*(frange[1] - frange[0])/100;
+ double curr_value = frange[0];
+ int nvalues = fusLUT->GetNumberOfTableValues();
+ //for (double i = frange[0]; i <= alpha_range_end; i++) {
+ for (double i = 0; curr_value < range_end; i++) {
+ fusLUT->GetTableValue(i, v);
+ v[3] = 0;
+ fusLUT->SetTableValue(i, v);
+ curr_value += (frange[1] - frange[0])/nvalues;
}
+ }
for ( unsigned int i = 0; i < mSlicers.size(); i++) {
- if (mSlicers[i]->GetOverlay() && mSlicers[i]->GetOverlayActor()->GetVisibility()) {
+
+ if (mSlicers[i]->GetOverlay()) {
vtkLookupTable* supLUT = vtkLookupTable::New();
supLUT->SetTableRange(range[0],range[1]);
supLUT->SetValueRange(1,1);
invLUT->SetHueRange(double((mOverlayColor+180)%360)/360,double((mOverlayColor+180)%360)/360);
invLUT->Build();
dynamic_cast<vvImageMapToWLColors*>(mSlicers[i]->GetWindowLevel())
- ->SetWindowLevelMode(true);
+ ->SetWindowLevelMode(true);
mSlicers[i]->GetWindowLevel()->SetLookupTable(supLUT);
mSlicers[i]->GetOverlayMapper()->SetLookupTable(invLUT);
invLUT->Delete();
supLUT->Delete();
+ } else if (mSlicers[i]->GetOverlay()) {
+ //dynamic_cast<vvImageMapToWLColors*>(mSlicers[i]->GetWindowLevel())
+ //->SetWindowLevelMode(false);
+ mSlicers[i]->GetWindowLevel()->SetLookupTable(LUT);
+ } else {
+ mSlicers[i]->GetWindowLevel()->SetLookupTable(LUT);
+ }
+
+ if (mSlicers[i]->GetFusion()) {
+ mSlicers[i]->GetFusionMapper()->SetLookupTable(fusLUT);
+ mSlicers[i]->GetFusionActor()->SetOpacity(double(mFusionOpacity)/100);
}
- else if (mSlicers[i]->GetOverlay())
- {
- //dynamic_cast<vvImageMapToWLColors*>(mSlicers[i]->GetWindowLevel())
- //->SetWindowLevelMode(false);
- mSlicers[i]->GetWindowLevel()->SetLookupTable(LUT);
- }
- else
- {
- mSlicers[i]->GetWindowLevel()->SetLookupTable(LUT);
- }
- if (mSlicers[i]->GetFusion() && mSlicers[i]->GetFusionActor()->GetVisibility())
- {
- mSlicers[i]->GetFusionActor()->SetOpacity(double(mFusionOpacity)/100);
- mSlicers[i]->GetFusionMapper()->SetLookupTable(fusLUT);
- }
}
if (fusLUT)
fusLUT->Delete();
//----------------------------------------------------------------------------
vvLandmarks* vvSlicerManager::GetLandmarks()
{
- if (mLandmarks == NULL)
- {
- mLandmarks = new vvLandmarks(mSlicers[0]->GetTMax()+1);
- for (unsigned int i = 0; i < mSlicers.size(); i++)
- mSlicers[i]->SetLandmarks(mLandmarks);
- }
+ if (mLandmarks == NULL) {
+ mLandmarks = new vvLandmarks(mSlicers[0]->GetTMax()+1);
+ for (unsigned int i = 0; i < mSlicers.size(); i++)
+ mSlicers[i]->SetLandmarks(mLandmarks);
+ }
return mLandmarks;
}
//----------------------------------------------------------------------------
double x_index = (x - mSlicers[0]->GetInput()->GetOrigin()[0])/mSlicers[0]->GetInput()->GetSpacing()[0];
double y_index = (y - mSlicers[0]->GetInput()->GetOrigin()[1])/mSlicers[0]->GetInput()->GetSpacing()[1];
double z_index = (z - mSlicers[0]->GetInput()->GetOrigin()[2])/mSlicers[0]->GetInput()->GetSpacing()[2];
- double value = mSlicers[0]->GetInput()->GetScalarComponentAsDouble(
- (int)x_index,
- (int)y_index,
- (int)z_index,0);
- this->GetLandmarks()->AddLandmark(x,y,z,t,value);
- emit LandmarkAdded();
+ if (x_index >= mSlicers[0]->GetInput()->GetWholeExtent()[0] &&
+ x_index <= mSlicers[0]->GetInput()->GetWholeExtent()[1] &&
+ y_index >= mSlicers[0]->GetInput()->GetWholeExtent()[2] &&
+ y_index <= mSlicers[0]->GetInput()->GetWholeExtent()[3] &&
+ z_index >= mSlicers[0]->GetInput()->GetWholeExtent()[4] &&
+ z_index <= mSlicers[0]->GetInput()->GetWholeExtent()[5]) {
+ double value = this->GetScalarComponentAsDouble(mSlicers[0]->GetInput(), x_index, y_index, z_index);
+ this->GetLandmarks()->AddLandmark(x,y,z,t,value);
+ emit LandmarkAdded();
+ }
}
//----------------------------------------------------------------------------
}
//----------------------------------------------------------------------------
-
//----------------------------------------------------------------------------
void vvSlicerManager::NextImage(int slicer)
{
}
//----------------------------------------------------------------------------
-
//----------------------------------------------------------------------------
-void vvSlicerManager::VerticalSliderHasChanged(int slicer, int slice) {
+void vvSlicerManager::VerticalSliderHasChanged(int slicer, int slice)
+{
emit AVerticalSliderHasChanged(slicer, slice);
}
-
+
+//----------------------------------------------------------------------------
+
+//----------------------------------------------------------------------------
+double vvSlicerManager::GetScalarComponentAsDouble(vtkImageData *image, double X, double Y, double Z, int component)
+{
+ int ix, iy, iz;
+ return mSlicers[0]->GetScalarComponentAsDouble(image, X, Y, Z, ix, iy, iz, component);
+}
//----------------------------------------------------------------------------
git://git.creatis.insa-lyon.fr / clitk.git / blobdiff