#include "vvSlicerManagerCommand.h"
#include "vvInteractorStyleNavigator.h"
#include "vvLandmarks.h"
-#include "vvImageReader.h"
-#include "vvImageReader.h"
#include "vvMesh.h"
#include "vvImageMapToWLColors.h"
#include "vvBlendImageActor.h"
#include <vtksys/SystemTools.hxx>
#include <vtkCamera.h>
+#include <qfileinfo.h>
+
//----------------------------------------------------------------------------
vvSlicerManager::vvSlicerManager(int numberOfSlicers)
{
mFusionName = "";
mVFId = "";
mLastError = "";
- mType = UNDEFINEDIMAGETYPE;
+ mType = vvImageReader::UNDEFINEDIMAGETYPE;
mColorMap = 0;
mPreset = 0;
mOverlayColor = 130;
- mFusionOpacity = 70;
+ mFusionOpacity = 30;
+ mFusionThresOpacity = 1;
mFusionColorMap = 3;
mFusionWindow = 1000;
mFusionLevel = 1000;
- mReader = NULL;
- mImage = NULL;
- mVF=NULL;
- mVectorReader = NULL;
- mOverlayReader = NULL;
- mFusionReader = NULL;
mLandmarks = NULL;
mLinkedId.resize(0);
- for ( int i = 0; i < numberOfSlicers; i++) {
- vvSlicer *slicer = vvSlicer::New();
- mSlicers.push_back(slicer);
- }
+ for ( int i = 0; i < numberOfSlicers; i++)
+ mSlicers.push_back(vtkSmartPointer<vvSlicer>::New());
+
mPreviousSlice.resize(numberOfSlicers);
mPreviousTSlice.resize(numberOfSlicers);
}
//----------------------------------------------------------------------------
vvSlicerManager::~vvSlicerManager()
{
- for ( unsigned int i = 0; i < mSlicers.size(); i++) {
- if (mSlicers[i] != NULL)
- mSlicers[i]->Delete();
- }
- if (mReader) {
- delete mReader;
- }
- if (mVectorReader) {
- delete mVectorReader;
- }
- if (mOverlayReader) {
- delete mOverlayReader;
- }
- if (mFusionReader) {
- delete mFusionReader;
- }
if (mLandmarks)
delete mLandmarks;
}
mFileName = filename;
mFileName = vtksys::SystemTools::GetFilenameName(mFileName);
mBaseFileName = vtksys::SystemTools::GetFilenameName(vtksys::SystemTools::GetFilenameWithoutLastExtension(mFileName));
- // DD(mBaseFileName);
mBaseFileNameNumber = number;
- for(unsigned int i=0; i<mSlicers.size(); i++) {
- mSlicers[i]->SetFileName(vtksys::SystemTools::GetFilenameWithoutLastExtension(filename));
- }
-
+ mFileName = mBaseFileName;
if (number != 0) {
mFileName.append("_"+clitk::toString(number));
}
+ mFileName.append(vtksys::SystemTools::GetFilenameLastExtension(filename));
+
+ for(unsigned int i=0; i<mSlicers.size(); i++) {
+ mSlicers[i]->SetFileName(mFileName);//vtksys::SystemTools::GetFilenameWithoutLastExtension(filename));
+ }
+
}
//------------------------------------------------------------------------------
}
//----------------------------------------------------------------------------
+//----------------------------------------------------------------------------
+std::string vvSlicerManager::GetListOfAbsoluteFilePathInOneString(const std::string &actorType)
+{
+ vvImageReader *reader = NULL;
+
+ if(actorType=="image")
+ reader = mReader;
+ else if(actorType=="overlay")
+ reader = mOverlayReader;
+ else if(actorType=="fusion")
+ reader = mFusionReader;
+ else if(actorType=="vector")
+ reader = mVectorReader;
+
+ if(!reader)
+ return "";
+
+ std::string list;
+ for(unsigned int i=0; i<reader->GetInputFilenames().size(); i++){
+ QFileInfo fileinfo(reader->GetInputFilenames()[i].c_str()); //Do not show the path
+ if(i)
+ list += '\n';
+ list += fileinfo.absoluteFilePath().toStdString();
+ }
+ return list;
+}
+//----------------------------------------------------------------------------
+
//----------------------------------------------------------------------------
-bool vvSlicerManager::SetImage(std::string filename, LoadedImageType type, int n, unsigned int slice)
+bool vvSlicerManager::SetImage(std::string filename, vvImageReader::LoadedImageType type, int n, unsigned int slice)
{
mType = type;
- if (mReader == NULL)
- mReader = new vvImageReader;
+ if (mReader.IsNull())
+ mReader = vvImageReader::New();
std::vector<std::string> filenames;
filenames.push_back(filename);
mReader->SetInputFilenames(filenames);
SetFilename(filename, n);
// mFileName = vtksys::SystemTools::GetFilenameName(mFileName);
//mBaseFileName = vtksys::SystemTools::GetFilenameName(vtksys::SystemTools::GetFilenameWithoutLastExtension(mFileName));
- // DD(mBaseFileName);
//mBaseFileNameNumber = n;
if (mReader->GetLastError().size() == 0) {
for ( unsigned int i = 0; i < mSlicers.size(); i++) {
mSlicers[i]->SetFileName(vtksys::SystemTools::GetFilenameWithoutLastExtension(filename));
mSlicers[i]->SetImage(mReader->GetOutput());
- // DD(mSlicers[i]->GetFileName());
}
} else {
mLastError = mReader->GetLastError();
return false;
}
// if (n!=0) {
- // // DD(mFileName);
// mFileName.append("_"+clitk::toString(n));
// }
return true;
//----------------------------------------------------------------------------
-bool vvSlicerManager::SetImages(std::vector<std::string> filenames,LoadedImageType type, int n)
+bool vvSlicerManager::SetImages(std::vector<std::string> filenames, vvImageReader::LoadedImageType type, int n)
{
mType = type;
std::string fileWithoutExtension = vtksys::SystemTools::GetFilenameWithoutExtension(filenames[0]);
- if (type == DICOM)
+ if (type == vvImageReader::DICOM)
fileWithoutExtension += "_dicom";
- else if (type == MERGED)
+ else if (type == vvImageReader::MERGED)
fileWithoutExtension += "_merged";
- else if (type == MERGEDWITHTIME)
+ else if (type == vvImageReader::MERGEDWITHTIME)
fileWithoutExtension += "_merged_wt";
mFileName = vtksys::SystemTools::GetFilenameName(mFileName);
mFileName = fileWithoutExtension + vtksys::SystemTools::GetFilenameExtension(filenames[0]);
- if (mReader == NULL)
- mReader = new vvImageReader;
+ if (mReader.IsNull())
+ mReader = vvImageReader::New();
mReader->SetInputFilenames(filenames);
mReader->Update(type);
mBaseFileName = vtksys::SystemTools::GetFilenameName(vtksys::SystemTools::GetFilenameWithoutLastExtension(mFileName));
- // DD(mBaseFileName);
mBaseFileNameNumber = n;
if (mReader->GetLastError().size() == 0) {
return false;
}
if (n!=0) {
- // DD(mFileName);
mFileName.append("_"+clitk::toString(n));
- // DD(mFileName);
}
return true;
}
mLastError = " Overlay dimension cannot be greater then reference image!";
return false;
}
- if (mOverlayReader == NULL)
- mOverlayReader = new vvImageReader;
+ if (mOverlayReader.IsNull())
+ mOverlayReader = vvImageReader::New();
std::vector<std::string> filenames;
filenames.push_back(filename);
mOverlayReader->SetInputFilenames(filenames);
mLastError = " Overlay dimension cannot be greater then reference image!";
return false;
}
- if (mFusionReader == NULL)
- mFusionReader = new vvImageReader;
+ if (mFusionReader.IsNull())
+ mFusionReader = vvImageReader::New();
std::vector<std::string> filenames;
filenames.push_back(filename);
mFusionReader->SetInputFilenames(filenames);
double *fusRange = mFusionReader->GetOutput()->GetVTKImages()[0]->GetScalarRange();
mFusionLevel = (fusRange[0]+fusRange[1])/2;
mFusionWindow = fusRange[1]-fusRange[0];
+
return true;
}
//----------------------------------------------------------------------------
//----------------------------------------------------------------------------
bool vvSlicerManager::SetVF(std::string filename)
{
- if (mVectorReader == NULL)
- mVectorReader = new vvImageReader;
+ if (mVectorReader.IsNull())
+ mVectorReader = vvImageReader::New();
mVectorReader->SetInputFilename(filename);
- mVectorReader->Update(VECTORFIELD);
+
+ if (mType == vvImageReader::IMAGEWITHTIME)
+ mVectorReader->Update(vvImageReader::VECTORFIELDWITHTIME);
+ else
+ mVectorReader->Update(vvImageReader::VECTORFIELD);
if (mVectorReader->GetLastError().size() != 0) {
mLastError = mVectorReader->GetLastError();
return false;
return false;
}
if (vf->GetNumberOfDimensions() == 4) {
- // DD(vf->GetSpacing()[3]);
- // DD(mImage->GetSpacing()[3]);
- // DD(vf->GetOrigin()[3]);
- // DD(mImage->GetOrigin()[3]);
if (vf->GetSpacing()[3] != mImage->GetSpacing()[3]) {
mLastError = "Sorry, vector field time spacing cannot be different from time spacing of the reference image.";
return false;
}
//----------------------------------------------------------------------------
+//----------------------------------------------------------------------------
+void vvSlicerManager::SetSliceOrientation(int slicer, int orientation)
+{
+ mSlicers[slicer]->SetSliceOrientation(orientation);
+ emit UpdateOrientation(slicer, orientation);
+}
+//----------------------------------------------------------------------------
//----------------------------------------------------------------------------
void vvSlicerManager::SetTSlice(int slice)
for ( unsigned int i = 0; i < mSlicers.size(); i++) {
if (slice != mSlicers[i]->GetTSlice()) {
mSlicers[i]->SetTSlice(slice);
- if (mSlicers[i]->GetImageActor()->GetVisibility())
UpdateTSlice(i);
}
}
t++;
if (t > mSlicers[0]->GetTMax())
t = 0;
- // DD("SetNextTSlice");
- // DD(originating_slicer);
- // DD(t);
+ //std::cout << "vvSlicerManager::SetNextTSlice" << std::endl;
emit UpdateTSlice(originating_slicer,t);
}
//----------------------------------------------------------------------------
t--;
if (t < 0)
t = mSlicers[0]->GetTMax();
+ //std::cout << "vvSlicerManager::SetPreviousTSlice" << std::endl;
emit UpdateTSlice(originating_slicer,t);
}
//----------------------------------------------------------------------------
if (mSlicers[slicer]->GetTSlice() == tslice) return;
mSlicers[slicer]->SetTSlice(tslice);
- if (mSlicers[slicer]->GetImageActor()->GetVisibility())
- UpdateTSlice(slicer);
+ UpdateTSlice(slicer);
}
//----------------------------------------------------------------------------
}
//----------------------------------------------------------------------------
-
//----------------------------------------------------------------------------
void vvSlicerManager::SetColorLevel(double s)
{
//----------------------------------------------------------------------------
//----------------------------------------------------------------------------
-void vvSlicerManager::SetCursorVisibility(int s)
+void vvSlicerManager::SetOverlayColorWindow(double s)
{
for ( unsigned int i = 0; i < mSlicers.size(); i++) {
- mSlicers[i]->SetCursorVisibility(s);
+ mSlicers[i]->SetOverlayColorWindow(s);
}
}
//----------------------------------------------------------------------------
+//----------------------------------------------------------------------------
+void vvSlicerManager::SetOverlayColorLevel(double s)
+{
+ for ( unsigned int i = 0; i < mSlicers.size(); i++) {
+ mSlicers[i]->SetOverlayColorLevel(s);
+ }
+}
+//----------------------------------------------------------------------------
+
+//----------------------------------------------------------------------------
+void vvSlicerManager::SetLinkOverlayWindowLevel(bool b)
+{
+ for ( unsigned int i = 0; i < mSlicers.size(); i++) {
+ mSlicers[i]->SetLinkOverlayWindowLevel(b);
+ }
+}
+//----------------------------------------------------------------------------
+
+//----------------------------------------------------------------------------
+void vvSlicerManager::SetCursorAndCornerAnnotationVisibility(int s)
+{
+ for ( unsigned int i = 0; i < mSlicers.size(); i++) {
+ mSlicers[i]->SetCursorVisibility(s);
+ mSlicers[i]->SetCornerAnnotationVisibility(s);
+ }
+}
+//----------------------------------------------------------------------------
//----------------------------------------------------------------------------
void vvSlicerManager::SetOpacity(int i, double factor)
//----------------------------------------------------------------------------
void vvSlicerManager::UpdateViews(int current,int slicer)
{
- // DD("UpdateViews");
- // DD(current);
- // DD(slicer);
-
double x = (mSlicers[slicer]->GetCurrentPosition()[0] - mSlicers[slicer]->GetInput()->GetOrigin()[0])
/mSlicers[slicer]->GetInput()->GetSpacing()[0];
double y = (mSlicers[slicer]->GetCurrentPosition()[1] - mSlicers[slicer]->GetInput()->GetOrigin()[1])
switch (mSlicers[slicer]->GetSliceOrientation()) {
case vtkImageViewer2::SLICE_ORIENTATION_XY:
- if (mSlicers[slicer]->GetSlice() == (int)floor(z))
- mSlicers[slicer]->Render();
- else
+ if (mSlicers[slicer]->GetSlice() != (int)floor(z))
mSlicers[slicer]->SetSlice((int)floor(z));
break;
case vtkImageViewer2::SLICE_ORIENTATION_XZ:
- if (mSlicers[slicer]->GetSlice() == (int)floor(y))
- mSlicers[slicer]->Render();
- else
+ if (mSlicers[slicer]->GetSlice() != (int)floor(y))
mSlicers[slicer]->SetSlice((int)floor(y));
break;
case vtkImageViewer2::SLICE_ORIENTATION_YZ:
- if (mSlicers[slicer]->GetSlice() == (int)floor(x))
- mSlicers[slicer]->Render();
- else
+ if (mSlicers[slicer]->GetSlice() != (int)floor(x))
mSlicers[slicer]->SetSlice((int)floor(x));
break;
}
+ mSlicers[slicer]->Render();
for ( unsigned int i = 0; i < mSlicers.size(); i++) {
- if (i != (unsigned int)slicer && mSlicers[i]->GetImageActor()->GetVisibility()
+ if (i != (unsigned int)slicer
+ && mSlicers[i]->GetRenderer()->GetDraw()
&& mSlicers[i]->GetRenderWindow()->GetSize()[0] > 2
&& mSlicers[i]->GetRenderWindow()->GetSize()[1] > 2) {
mSlicers[i]->SetCurrentPosition(mSlicers[slicer]->GetCurrentPosition()[0],
}
switch (mSlicers[i]->GetSliceOrientation()) {
case vtkImageViewer2::SLICE_ORIENTATION_XY:
- if (mSlicers[i]->GetSlice() == (int)floor(z))
- mSlicers[i]->Render();
- else
+ if (mSlicers[i]->GetSlice() != (int)floor(z))
mSlicers[i]->SetSlice((int)floor(z));
break;
case vtkImageViewer2::SLICE_ORIENTATION_XZ:
- if (mSlicers[i]->GetSlice() == (int)floor(y))
- mSlicers[i]->Render();
- else
+ if (mSlicers[i]->GetSlice() != (int)floor(y))
mSlicers[i]->SetSlice((int)floor(y));
break;
case vtkImageViewer2::SLICE_ORIENTATION_YZ:
- if (mSlicers[i]->GetSlice() == (int)floor(x))
- mSlicers[i]->Render();
- else
+ if (mSlicers[i]->GetSlice() != (int)floor(x))
mSlicers[i]->SetSlice((int)floor(x));
break;
}
- // DD("UpdateViews::");
- // DD(i);
+
+ mSlicers[i]->Render();
+
UpdateSlice(i);
UpdateTSlice(i);
}
//----------------------------------------------------------------------------
//----------------------------------------------------------------------------
-void vvSlicerManager::UpdateLinkedNavigation(vvSlicer *slicer, bool bPropagate)
+void vvSlicerManager::UpdateLinkedNavigation(vvSlicer *refSlicer, bool bPropagate)
{
+ vtkCamera *refCam = refSlicer->GetRenderer()->GetActiveCamera();
+ double refPosition[3], refFocal[3];
+ refCam->GetPosition(refPosition);
+ refCam->GetFocalPoint(refFocal);
+
for ( unsigned int i = 0; i < mSlicers.size(); i++) {
- vtkCamera *camera = mSlicers[i] ->GetRenderer()->GetActiveCamera();
- vtkCamera *refCam = slicer->GetRenderer()->GetActiveCamera();
+ vtkCamera *camera = mSlicers[i]->GetRenderer()->GetActiveCamera();
camera->SetParallelScale(refCam->GetParallelScale());
double position[3], focal[3];
camera->GetPosition(position);
camera->GetFocalPoint(focal);
- double refPosition[3], refFocal[3];
- refCam->GetPosition(refPosition);
- refCam->GetFocalPoint(refFocal);
-
- if(slicer->GetSliceOrientation()==mSlicers[i]->GetSliceOrientation()) {
+ if(refSlicer->GetSliceOrientation()==mSlicers[i]->GetSliceOrientation()) {
for(int i=0; i<3; i++) {
position[i] = refPosition[i];
focal[i] = refFocal[i];
}
}
- if(slicer->GetSliceOrientation()==vtkImageViewer2::SLICE_ORIENTATION_XY) {
+ if(refSlicer->GetSliceOrientation()==vtkImageViewer2::SLICE_ORIENTATION_XY) {
if(mSlicers[i]->GetSliceOrientation()==vtkImageViewer2::SLICE_ORIENTATION_XZ) {
position[0] = refPosition[0];
focal[0] = refFocal[0];
}
}
- if(slicer->GetSliceOrientation()==vtkImageViewer2::SLICE_ORIENTATION_XZ) {
+ if(refSlicer->GetSliceOrientation()==vtkImageViewer2::SLICE_ORIENTATION_XZ) {
if(mSlicers[i]->GetSliceOrientation()==vtkImageViewer2::SLICE_ORIENTATION_YZ) {
position[2] = refPosition[2];
focal[2] = refFocal[2];
}
}
- if(slicer->GetSliceOrientation()==vtkImageViewer2::SLICE_ORIENTATION_YZ) {
+ if(refSlicer->GetSliceOrientation()==vtkImageViewer2::SLICE_ORIENTATION_YZ) {
if(mSlicers[i]->GetSliceOrientation()==vtkImageViewer2::SLICE_ORIENTATION_XY) {
position[1] = refPosition[1];
focal[1] = refFocal[1];
camera->SetFocalPoint(focal);
camera->SetPosition(position);
-
- if(bPropagate)
- for (std::list<std::string>::const_iterator i = mLinkedId.begin(); i != mLinkedId.end(); i++)
- emit UpdateLinkedNavigation(*i, this);
+
+ //Fix for bug #243
+ mSlicers[i]->ForceUpdateDisplayExtent();
}
+
Render();
+ if(bPropagate)
+ for (std::list<std::string>::const_iterator i = mLinkedId.begin(); i != mLinkedId.end(); i++)
+ emit UpdateLinkedNavigation(*i, this, refSlicer);
}
//----------------------------------------------------------------------------
}
//----------------------------------------------------------------------------
+//----------------------------------------------------------------------------
+double vvSlicerManager::GetOverlayColorWindow() const
+{
+ if (mSlicers.size())
+ return mSlicers[0]->GetOverlayColorWindow();
+ return -1;
+}
+//----------------------------------------------------------------------------
+
+//----------------------------------------------------------------------------
+double vvSlicerManager::GetOverlayColorLevel() const
+{
+ if (mSlicers.size())
+ return mSlicers[0]->GetOverlayColorLevel();
+ return -1;
+}
+//----------------------------------------------------------------------------
+
+//----------------------------------------------------------------------------
+bool vvSlicerManager::GetLinkOverlayWindowLevel() const
+{
+ if (mSlicers.size())
+ return mSlicers[0]->GetLinkOverlayWindowLevel();
+ return -1;
+}
+//----------------------------------------------------------------------------
+
+//------------------------------------------------------------------------------
+void vvSlicerManager::ResetTransformationToIdentity(const std::string actorType)
+{
+ if(actorType == "image")
+ this->GetImage()->GetTransform()->Identity();
+ else if(actorType == "overlay")
+ this->GetSlicer(0)->GetOverlay()->GetTransform()->Identity();
+ else if(actorType == "fusion")
+ this->GetSlicer(0)->GetFusion()->GetTransform()->Identity();
+ else if(actorType == "vf")
+ this->GetVF()->GetTransform()->Identity();
+ else
+ return;
+
+ for(int i=0; i< this->GetNumberOfSlicers(); i++){
+ this->GetSlicer(i)->ForceUpdateDisplayExtent();
+ this->GetSlicer(i)->ResetCamera();
+ this->GetSlicer(i)->Render();
+ }
+}
+//------------------------------------------------------------------------------
//----------------------------------------------------------------------------
void vvSlicerManager::Render()
{
- // DD("vvSlicerManager::Render");
for ( unsigned int i = 0; i < mSlicers.size(); i++) {
- // DD(i);
mSlicers[i]->Render();
}
}
//----------------------------------------------------------------------------
void vvSlicerManager::ReloadVF()
{
- mVectorReader->Update(VECTORFIELD); //deletes the old images through the VF::Init() function
+ mVectorReader->Update(vvImageReader::VECTORFIELD); //deletes the old images through the VF::Init() function
mVF=mVectorReader->GetOutput();
for ( unsigned int i = 0; i < mSlicers.size(); i++) {
mSlicers[i]->SetVF(mVF);
//----------------------------------------------------------------------------
void vvSlicerManager::RemoveActor(const std::string& actor_type, int overlay_index)
{
- for (unsigned int i = 0; i < mSlicers.size(); i++) {
+ if (actor_type =="overlay")
+ mOverlayReader = NULL;
+
+ if (actor_type =="fusion")
+ mFusionReader = NULL;
+
+ for (unsigned int i = 0; i < mSlicers.size(); i++)
mSlicers[i]->RemoveActor(actor_type,overlay_index);
- }
+
if (actor_type=="vector") {
mVF=NULL;
- if (mVectorReader) {
- delete mVectorReader;
- mVectorReader=NULL;
- }
+ mVectorReader=NULL;
}
}
//----------------------------------------------------------------------------
//----------------------------------------------------------------------------
void vvSlicerManager::RemoveActors()
{
- ///This method leaks a few objects. See RemoveActor for what a correct implementation would look like
+ ///This method leaks a few objects. See RemoveActor for what a
+ ///correct implementation would look like
+ //DS -> probably due to the reader (now released in the
+ //RemoveActor() function. (I hope)
for ( unsigned int i = 0; i < mSlicers.size(); i++) {
mSlicers[i]->SetDisplayMode(0);
mSlicers[i]->GetRenderer()->RemoveActor(mSlicers[i]->GetImageActor());
Y <= mSlicers[slicer]->GetInput()->GetWholeExtent()[3] &&
Z >= mSlicers[slicer]->GetInput()->GetWholeExtent()[4] &&
Z <= mSlicers[slicer]->GetInput()->GetWholeExtent()[5]) {
- value = mSlicers[slicer]->GetInput()->GetScalarComponentAsDouble(
- (int)floor(X),
- (int)floor(Y),
- (int)floor(Z),0);
- if (mSlicers[slicer]->GetVFActor() && mSlicers[slicer]->GetVFActor()->GetVisibility()) {
+ value = this->GetScalarComponentAsDouble(mSlicers[slicer]->GetInput(), X, Y, Z);
+
+ if (mSlicers[slicer]->GetVFActor() ) {
displayVec = 1;
unsigned int currentTime = mSlicers[slicer]->GetTSlice();
vtkImageData *vf = NULL;
double Xvf = (x - vf->GetOrigin()[0])/ vf->GetSpacing()[0];
double Yvf = (y - vf->GetOrigin()[1])/ vf->GetSpacing()[1];
double Zvf = (z - vf->GetOrigin()[2])/ vf->GetSpacing()[2];
- xVec = vf->GetScalarComponentAsDouble( (int)floor(Xvf), (int)floor(Yvf), (int)floor(Zvf),0);
- yVec = vf->GetScalarComponentAsDouble( (int)floor(Xvf), (int)floor(Yvf), (int)floor(Zvf),1);
- zVec = vf->GetScalarComponentAsDouble( (int)floor(Xvf), (int)floor(Yvf), (int)floor(Zvf),2);
+ xVec = this->GetScalarComponentAsDouble( vf, Xvf, Yvf, Zvf, 0);
+ yVec = this->GetScalarComponentAsDouble( vf, Xvf, Yvf, Zvf, 1);
+ zVec = this->GetScalarComponentAsDouble( vf, Xvf, Yvf, Zvf, 2);
valueVec = sqrt(xVec*xVec + yVec*yVec + zVec*zVec);
}
}
- if (mSlicers[slicer]->GetOverlayActor() && mSlicers[slicer]->GetOverlayActor()->GetVisibility()) {
+ if (mSlicers[slicer]->GetOverlayActor() ) {
displayOver = 1;
- double Xover = (x - mSlicers[slicer]->GetOverlay()->GetOrigin()[0])
- /mSlicers[slicer]->GetOverlay()->GetSpacing()[0];
- double Yover = (y - mSlicers[slicer]->GetOverlay()->GetOrigin()[1])
- /mSlicers[slicer]->GetOverlay()->GetSpacing()[1];
- double Zover = (z - mSlicers[slicer]->GetOverlay()->GetOrigin()[2])
- /mSlicers[slicer]->GetOverlay()->GetSpacing()[2];
- if (Xover >= mSlicers[slicer]->GetOverlayMapper()->GetInput()->GetWholeExtent()[0] &&
- Xover <= mSlicers[slicer]->GetOverlayMapper()->GetInput()->GetWholeExtent()[1] &&
- Yover >= mSlicers[slicer]->GetOverlayMapper()->GetInput()->GetWholeExtent()[2] &&
- Yover <= mSlicers[slicer]->GetOverlayMapper()->GetInput()->GetWholeExtent()[3] &&
- Zover >= mSlicers[slicer]->GetOverlayMapper()->GetInput()->GetWholeExtent()[4] &&
- Zover <= mSlicers[slicer]->GetOverlayMapper()->GetInput()->GetWholeExtent()[5]) {
- valueOver = static_cast<vtkImageData*>(mSlicers[slicer]->GetOverlayMapper()->GetInput())->
- GetScalarComponentAsDouble(
- (int)floor(Xover),
- (int)floor(Yover),
- (int)floor(Zover),0);
- }
+ vtkImageData *overlay = dynamic_cast<vtkImageData*>(mSlicers[slicer]->GetOverlayMapper()->GetInput());
+ double Xover = (x - overlay->GetOrigin()[0]) / overlay->GetSpacing()[0];
+ double Yover = (y - overlay->GetOrigin()[1]) / overlay->GetSpacing()[1];
+ double Zover = (z - overlay->GetOrigin()[2]) / overlay->GetSpacing()[2];
+ valueOver = this->GetScalarComponentAsDouble(overlay, Xover, Yover, Zover);
}
- if (mSlicers[slicer]->GetFusionActor() && mSlicers[slicer]->GetFusionActor()->GetVisibility()) {
+ if (mSlicers[slicer]->GetFusionActor() ) {
displayFus = 1;
- double Xfus = (x - mSlicers[slicer]->GetFusion()->GetOrigin()[0])
- /mSlicers[slicer]->GetFusion()->GetSpacing()[0];
- double Yfus = (y - mSlicers[slicer]->GetFusion()->GetOrigin()[1])
- /mSlicers[slicer]->GetFusion()->GetSpacing()[1];
- double Zfus = (z - mSlicers[slicer]->GetFusion()->GetOrigin()[2])
- /mSlicers[slicer]->GetFusion()->GetSpacing()[2];
- if (Xfus >= mSlicers[slicer]->GetFusionMapper()->GetInput()->GetWholeExtent()[0] &&
- Xfus <= mSlicers[slicer]->GetFusionMapper()->GetInput()->GetWholeExtent()[1] &&
- Yfus >= mSlicers[slicer]->GetFusionMapper()->GetInput()->GetWholeExtent()[2] &&
- Yfus <= mSlicers[slicer]->GetFusionMapper()->GetInput()->GetWholeExtent()[3] &&
- Zfus >= mSlicers[slicer]->GetFusionMapper()->GetInput()->GetWholeExtent()[4] &&
- Zfus <= mSlicers[slicer]->GetFusionMapper()->GetInput()->GetWholeExtent()[5]) {
- valueFus = static_cast<vtkImageData*>(mSlicers[slicer]->GetFusionMapper()->GetInput())->
- GetScalarComponentAsDouble(
- (int)floor(Xfus),
- (int)floor(Yfus),
- (int)floor(Zfus),0);
- }
+ vtkImageData *fusion = dynamic_cast<vtkImageData*>(mSlicers[slicer]->GetFusionMapper()->GetInput());
+ double Xover = (x - fusion->GetOrigin()[0]) / fusion->GetSpacing()[0];
+ double Yover = (y - fusion->GetOrigin()[1]) / fusion->GetSpacing()[1];
+ double Zover = (z - fusion->GetOrigin()[2]) / fusion->GetSpacing()[2];
+ valueFus = this->GetScalarComponentAsDouble(fusion, Xover, Yover, Zover);
}
emit UpdatePosition(mSlicers[slicer]->GetCursorVisibility(),
x,y,z,X,Y,Z,value);
emit UpdateVector(displayVec,xVec, yVec, zVec, valueVec);
emit UpdateOverlay(displayOver,valueOver,value);
emit UpdateFusion(displayFus,valueFus);
- for (unsigned int i = 0; i < mSlicers.size(); i++) {
- if (mSlicers[i]->GetImageActor()->GetVisibility() == 1)
- emit UpdateWindows(i,mSlicers[i]->GetSliceOrientation(),mSlicers[i]->GetSlice());
- else
- emit UpdateWindows(i,-1,-1);
- }
}
}
//----------------------------------------------------------------------------
//----------------------------------------------------------------------------
+//----------------------------------------------------------------------------
+void vvSlicerManager::Picked()
+{
+ emit currentPickedImageChanged(mId);
+}
+//----------------------------------------------------------------------------
+
+
//----------------------------------------------------------------------------
void vvSlicerManager::UpdateWindowLevel()
{
- emit WindowLevelChanged(mSlicers[0]->GetColorWindow(),mSlicers[0]->GetColorLevel(),mPreset,mColorMap);
+ emit WindowLevelChanged();
}
//----------------------------------------------------------------------------
//----------------------------------------------------------------------------
void vvSlicerManager::UpdateSlice(int slicer)
{
- // DD("vvSlicerManager::UpdateSlice emit UpdateSlice");
- // DD(slicer);
- // DD(mSlicers[slicer]->GetSlice());
if (mPreviousSlice[slicer] == mSlicers[slicer]->GetSlice()) {
//DD("============= NOTHING");
return;
}
+ //std::cout << "vvSlicerManager::UpdateSlice " << slicer << " " << mSlicers[slicer]->GetSlice() << std::endl;
emit UpdateSlice(slicer, mSlicers[slicer]->GetSlice());
mSlicers[slicer]->Render(); // DS <-- I add this, this could/must be the only Render ...
mPreviousSlice[slicer] = mSlicers[slicer]->GetSlice();
//----------------------------------------------------------------------------
void vvSlicerManager::UpdateTSlice(int slicer)
{
- // DD("vvSlicerManager::UpdateTSlice emit UpdateTSlice");
- // DD(slicer);
- // DD(mSlicers[slicer]->GetTSlice());
- // DD(mSlicers[slicer]->GetSlice());
- if (mPreviousSlice[slicer] == mSlicers[slicer]->GetSlice()) {
- if (mPreviousTSlice[slicer] == mSlicers[slicer]->GetTSlice()) {
+ int slice = mSlicers[slicer]->GetSlice();
+ int tslice = mSlicers[slicer]->GetTSlice();
+ if (mPreviousSlice[slicer] == slice) {
+ if (mPreviousTSlice[slicer] == tslice) {
// DD("************** NOTHING ***********");
return;
}
}
- mPreviousSlice[slicer] = mSlicers[slicer]->GetSlice();
- mPreviousTSlice[slicer] = mSlicers[slicer]->GetTSlice();
- emit UpdateTSlice(slicer,mSlicers[slicer]->GetTSlice());
+ mPreviousSlice[slicer] = slice;
+ mPreviousTSlice[slicer] = tslice;
+ //std::cout << "vvSlicerManager::UpdateTSlice " << slicer << " " << tslice << std::endl;
+ emit UpdateTSlice(slicer, tslice);
}
//----------------------------------------------------------------------------
std::string component_type=mImage->GetScalarTypeAsITKString();
switch (preset) {
case 0:
- if (component_type == "unsigned_char") {
- window = 255;
- level = 127;
- } else if (component_type == "short") {
- window = 2000;
- level = 0;
- } else {
- double range[2];
- mImage->GetScalarRange(range);
- window = range[1] - range[0];
- level = (range[1] + range[0])* 0.5;
- }
+ double range[2];
+ mImage->GetScalarRange(range);
+ window = range[1] - range[0];
+ level = (range[1] + range[0])* 0.5;
break;
case 1:
window = 2000;
level = 0;
break;
case 2:
- window = 350;
- level = 60;
+ window = 400;
+ level = 20;
break;
case 3:
window = 1500;
//----------------------------------------------------------------------------
-void vvSlicerManager::SetLocalColorWindowing(const int slicer)
+void vvSlicerManager::SetLocalColorWindowing(const int slicer, const bool bCtrlKey)
{
double min, max;
- this->mSlicers[slicer]->GetExtremasAroundMousePointer(min, max);
- this->SetColorWindow(max-min);
- this->SetColorLevel(0.5*(min+max));
- this->UpdateWindowLevel();
+ int t = this->mSlicers[slicer]->GetTSlice();
+ if(bCtrlKey && this->mSlicers[slicer]->GetFusion()) {
+ this->mSlicers[slicer]->GetExtremasAroundMousePointer(min, max, this->mSlicers[slicer]->GetFusion()->GetVTKImages()[t]);
+ this->SetFusionWindow(max-min);
+ this->SetFusionLevel(0.5*(min+max));
+ this->SetColorMap(mColorMap);
+ }
+ else if(bCtrlKey && this->mSlicers[slicer]->GetOverlay()) {
+ this->mSlicers[slicer]->GetExtremasAroundMousePointer(min, max, this->mSlicers[slicer]->GetOverlay()->GetVTKImages()[t]);
+ if(this->mSlicers[slicer]->GetLinkOverlayWindowLevel()){
+ this->SetColorWindow(max-min);
+ this->SetColorLevel(0.5*(min+max));
+ } else {
+ this->SetOverlayColorWindow(max-min);
+ this->SetOverlayColorLevel(0.5*(min+max));
+ }
+ }
+ else {
+ this->mSlicers[slicer]->GetExtremasAroundMousePointer(min, max, this->mSlicers[slicer]->GetInput());
+ this->SetColorWindow(max-min);
+ this->SetColorLevel(0.5*(min+max));
+ this->SetPreset(6);
+ }
this->Render();
-}
-//----------------------------------------------------------------------------
-
-
-//----------------------------------------------------------------------------
-void vvSlicerManager::SetColorMap()
-{
- SetColorMap(mColorMap);
+ this->UpdateWindowLevel();
}
//----------------------------------------------------------------------------
case 3:
if (LUT == NULL)
LUT = vtkLookupTable::New();
- LUT->SetValueRange(0,1);
+ LUT->SetValueRange(0.5,1);
+ LUT->SetSaturationRange(1,1);
+ LUT->SetHueRange(0.666,0);
+ break;
+ case 4:
+ if (LUT == NULL)
+ LUT = vtkLookupTable::New();
+ LUT->SetValueRange(1,1);
LUT->SetSaturationRange(1,1);
LUT->SetHueRange(0,1);
+ LUT->SetAlphaRange(1, 1);
break;
case 5:
if (LUT == NULL)
LUT = vtkLookupTable::New();
- LUT->SetValueRange(0.,1);
+ LUT->SetValueRange(1,1);
LUT->SetSaturationRange(1,1);
LUT->SetHueRange(1,0.1);
//LUT->SetRampToLinear();
break;
}
if (LUT) {
- LUT->SetTableRange(level-fabs(window)/4,level+fabs(window)/4);
+ LUT->SetTableRange(level-fabs(window)/2,level+fabs(window)/2);
LUT->Build();
}
- vtkLookupTable* fusLUT = NULL;
- if (mSlicers[0]->GetFusion()) {
- fusLUT = vtkLookupTable::New();
+ vtkWindowLevelLookupTable* fusLUT = NULL;
+ if (mSlicers[0]->GetFusion()) { // && mFusionColorMap >= 0) {
+ fusLUT = vtkWindowLevelLookupTable::New();
double fusRange [2];
fusRange[0] = mFusionLevel - mFusionWindow/2;
fusRange[1] = mFusionLevel + mFusionWindow/2;
- fusLUT->SetTableRange(fusRange[0],fusRange[1]);
+ double* frange = mFusionReader->GetOutput()->GetVTKImages()[0]->GetScalarRange();
+ fusLUT->SetTableRange(frange);
fusLUT->SetValueRange(1,1);
fusLUT->SetSaturationRange(1,1);
+ fusLUT->SetAlphaRange(1, 1);
+ fusLUT->SetWindow(mFusionWindow);
+ fusLUT->SetLevel(mFusionLevel);
if (mFusionColorMap == 1)
fusLUT->SetHueRange(0,0.18);
else if (mFusionColorMap == 2)
fusLUT->SetHueRange(0.4,0.80);
else if (mFusionColorMap == 3)
+ {
+ fusLUT->SetHueRange(0.666, 0);
+ fusLUT->SetValueRange(0.5, 1);
+ }
+ else if (mFusionColorMap == 4)
fusLUT->SetHueRange(0,1);
- fusLUT->Build();
- if (mFusionColorMap == 0)
- fusLUT = NULL;
+ else if (mFusionColorMap <= 0)
+ {
+ fusLUT->SetValueRange(0,1);
+ fusLUT->SetSaturationRange(0,0);
+ }
+
+ fusLUT->ForceBuild();
+ double v[4];
+
+ // set color table transparency
+ double range_end = frange[0] + (double)mFusionThresOpacity*(frange[1] - frange[0])/100;
+ double curr_value = frange[0];
+ int nvalues = fusLUT->GetNumberOfTableValues();
+ //for (double i = frange[0]; i <= alpha_range_end; i++) {
+ for (double i = 0; curr_value < range_end; i++) {
+ fusLUT->GetTableValue(i, v);
+ v[3] = 0;
+ fusLUT->SetTableValue(i, v);
+ curr_value += (frange[1] - frange[0])/nvalues;
+ }
}
for ( unsigned int i = 0; i < mSlicers.size(); i++) {
- if (mSlicers[i]->GetOverlay() && mSlicers[i]->GetOverlayActor()->GetVisibility()) {
+
+ if (mSlicers[i]->GetOverlay()) {
vtkLookupTable* supLUT = vtkLookupTable::New();
supLUT->SetTableRange(range[0],range[1]);
supLUT->SetValueRange(1,1);
} else {
mSlicers[i]->GetWindowLevel()->SetLookupTable(LUT);
}
- if (mSlicers[i]->GetFusion() && mSlicers[i]->GetFusionActor()->GetVisibility()) {
- mSlicers[i]->GetFusionActor()->SetOpacity(double(mFusionOpacity)/100);
+
+ if (mSlicers[i]->GetFusion()) {
mSlicers[i]->GetFusionMapper()->SetLookupTable(fusLUT);
- mSlicers[i]->GetFusionMapper()->SetWindow(mFusionWindow);
- mSlicers[i]->GetFusionMapper()->SetLevel(mFusionLevel);
+ mSlicers[i]->GetFusionActor()->SetOpacity(double(mFusionOpacity)/100);
}
}
if (fusLUT)
y_index <= mSlicers[0]->GetInput()->GetWholeExtent()[3] &&
z_index >= mSlicers[0]->GetInput()->GetWholeExtent()[4] &&
z_index <= mSlicers[0]->GetInput()->GetWholeExtent()[5]) {
- double value = mSlicers[0]->GetInput()->GetScalarComponentAsDouble(
- (int)x_index,
- (int)y_index,
- (int)z_index,0);
+ double value = this->GetScalarComponentAsDouble(mSlicers[0]->GetInput(), x_index, y_index, z_index);
this->GetLandmarks()->AddLandmark(x,y,z,t,value);
emit LandmarkAdded();
}
}
//----------------------------------------------------------------------------
-
//----------------------------------------------------------------------------
void vvSlicerManager::NextImage(int slicer)
{
}
//----------------------------------------------------------------------------
-
//----------------------------------------------------------------------------
void vvSlicerManager::VerticalSliderHasChanged(int slicer, int slice)
{
}
//----------------------------------------------------------------------------
+
+//----------------------------------------------------------------------------
+double vvSlicerManager::GetScalarComponentAsDouble(vtkImageData *image, double X, double Y, double Z, int component)
+{
+ int ix, iy, iz;
+ return mSlicers[0]->GetScalarComponentAsDouble(image, X, Y, Z, ix, iy, iz, component);
+}
+//----------------------------------------------------------------------------
git://git.creatis.insa-lyon.fr / clitk.git / blobdiff