Debug RTStruct conversion with empty struc

[clitk.git] / vv / vvSlicerManager.h

diff --git a/vv/vvSlicerManager.h b/vv/vvSlicerManager.h
index 50a31ba913eb31ba8b133a65acdb283f42633768..4acb1668cd22ed64e4b20abf07e883671771982a 100644 (file)
--- a/vv/vvSlicerManager.h
+++ b/vv/vvSlicerManager.h
@@ -47,6 +47,18 @@ class vvImageReader;
 class vvImageReader;
 class vvLandmarks;
 
+enum WindowLevelPreset {
+  WL_AUTO,
+  WL_HOUNSFIELD,
+  WL_SOFTTISSUE,
+  WL_LUNGS,
+  WL_BONES,
+  WL_HEAD,
+  WL_BINARY,
+  WL_USER,
+  WL_VENTILATION
+};
+
 //------------------------------------------------------------------------------
 class vvSlicerManager : public QObject {
   Q_OBJECT
@@ -62,10 +74,11 @@ class vvSlicerManager : public QObject {
 
   bool SetImage(std::string filename, vvImageReader::LoadedImageType type, int n=0, unsigned int slice=0);
   void SetImage(vvImage::Pointer image);
-  bool SetImages(std::vector<std::string> filenames, vvImageReader::LoadedImageType type, int n=0);
+  bool SetImages(std::vector<std::string> filenames, vvImageReader::LoadedImageType type, int n=0, bool patientCoordinateSystem=0);
 
-  bool SetOverlay(std::string filename, int dim, std::string component);
-  bool SetFusion(std::string filename, int dim, std::string component);
+  bool SetOverlay(std::vector<std::string> filenames, int dim, std::string component, vvImageReader::LoadedImageType type);
+  bool SetFusion(std::vector<std::string> filenames,int dim, std::string component, vvImageReader::LoadedImageType type);
+  bool SetFusionSequence(std::vector<std::string> filenames, int dim, std::string component, vvImageReader::LoadedImageType type);
   ///Set a VF by loading it from the disk
   bool SetVF(std::string filename);
   ///Set a VF from memory
@@ -86,6 +99,10 @@ class vvSlicerManager : public QObject {
   ///Switch between nearest neighbor and linear interpolation
   void ToggleInterpolation();
   vvSlicer* GetSlicer(int i);
+  int GetSelectedSlicer() {
+    return mSelectedSlicer;
+  }
+  
   void UpdateSlicer(int num, bool state);
   void SetSlicerWindow(int i, vtkRenderWindow* RW);
   void SetInteractorStyleNavigator(int i,vtkInteractorStyle* style);
@@ -95,7 +112,7 @@ class vvSlicerManager : public QObject {
   vvImage::Pointer GetVF()     { return mVF; }
   int GetType()                { return mType; }
   void SetId(std::string id)   { mId = id; }
-  std::string GetId()          { return mId; }
+  std::string GetId()  const        { return mId; }
   int GetDimension() {
     if (mImage) return mImage->GetNumberOfDimensions();
     else return -1;
@@ -105,11 +122,13 @@ class vvSlicerManager : public QObject {
 
   void SetSliceOrientation(int slicer, int orientation);
   int GetTSlice();
-  void SetTSlice(int slice);
+  void SetTSlice(int slice, bool updateLinkedImages = true);
   void SetNextTSlice(int originating_slicer);
   void SetPreviousTSlice(int originating_slicer);
   void SetTSliceInSlicer(int tslice, int slicer);
 
+  void SetFusionSequenceTSlice(int slice);
+
   void GenerateDefaultLookupTable();
   void SetColorWindow(double s);
   void SetColorLevel(double s);
@@ -142,15 +161,51 @@ class vvSlicerManager : public QObject {
     mFusionShowLegend = show;
   }
 
-  double GetColorWindow();
-  double GetColorLevel();
+
+  //set/get fusionSequence related data
+  void SetFusionSequenceFrameIndex(int sequenceFrameIndex) { mFusionSequenceFrameIndex = sequenceFrameIndex; }
+  void SetFusionSequenceSpatialSyncFlag(bool spatialSync) { mFusionSequenceSpatialSyncFlag = spatialSync; }
+  void SetFusionSequenceTemporalSyncFlag(bool temporalSync) { mFusionSequenceTemporalSyncFlag = temporalSync; }
+  void SetFusionSequenceLength(unsigned int fusionSequenceNbFrames) { mFusionSequenceNbFrames = fusionSequenceNbFrames; }
+  void SetFusionSequenceMainTransformMatrix(vtkSmartPointer<vtkMatrix4x4> mat) { 
+         mFusionSequenceMainTransform = vtkSmartPointer<vtkMatrix4x4>::New();
+         mFusionSequenceMainTransform->DeepCopy(mat);
+  }
+  void AddFusionSequenceInitialTransformMatrices(vtkSmartPointer<vtkMatrix4x4> mat) { 
+               vtkSmartPointer<vtkMatrix4x4> tmpMat = vtkSmartPointer<vtkMatrix4x4>::New();
+               tmpMat->DeepCopy(mat);
+               mFusionSequenceListInitialTransformMatrices.push_back( tmpMat );
+  }
+  void SetFusionSequenceIndexOfLinkedManager(int index) { mFusionSequenceIndexLinkedManager = index; }
+  void SetFusionSequenceCorrespondances(std::vector<unsigned> s) { mFusionSequenceCorrespondances = s; }
+  
+  void SetFusionSequenceInvolvmentCode(int code) { mFusionSequenceInvolvementCode=code; }
+  int GetFusionSequenceInvolvmentCode() { return mFusionSequenceInvolvementCode;}
+  bool IsInvolvedInFusionSequence() {return (!(mFusionSequenceInvolvementCode==-1));}
+  bool IsMainSequenceOfFusionSequence() {return (mFusionSequenceInvolvementCode==0);}
+  bool IsSecondarySequenceOfFusionSequence() {return (mFusionSequenceInvolvementCode==1);}
+
+  int GetFusionSequenceIndexOfLinkedManager() { return mFusionSequenceIndexLinkedManager; }
+  int GetFusionSequenceFrameIndex() { return mFusionSequenceFrameIndex; }
+  bool GetFusionSequenceSpatialSyncFlag() { return mFusionSequenceSpatialSyncFlag; }
+  bool GetFusionSequenceTemporalSyncFlag() { return mFusionSequenceTemporalSyncFlag; }
+  unsigned int GetFusionSequenceNbFrames() { return mFusionSequenceNbFrames; }
+  const vtkSmartPointer<vtkMatrix4x4>& GetFusionSequenceMainTransformMatrix() {return mFusionSequenceMainTransform;}
+  const std::vector< vtkSmartPointer<vtkMatrix4x4> >& GetFusionSequenceInitialTransformMatrices() {return mFusionSequenceListInitialTransformMatrices;}
+  const vtkSmartPointer<vtkMatrix4x4>& GetFusionSequenceInitialTransformMatrixAtFrame(unsigned i) {
+         return mFusionSequenceListInitialTransformMatrices[i];
+  }
+  const std::vector<unsigned>& GetFusionSequenceCorrespondances() {return mFusionSequenceCorrespondances;}
+
+  double GetColorWindow() const;
+  double GetColorLevel() const;
   double GetOverlayColorWindow() const;
   double GetOverlayColorLevel() const;
   bool GetLinkOverlayWindowLevel() const;
   int GetColorMap() {
     return mColorMap;
   }
-  int GetPreset() {
+  int GetPreset() const {
     return mPreset;
   }
   SlicingPresetType GetSlicingPreset() {
@@ -175,6 +230,7 @@ class vvSlicerManager : public QObject {
     return mFusionLevel;
   }
 
+
   void SetCursorAndCornerAnnotationVisibility(int s);
   void UpdateViews(int current, int slicer);
   void UpdateLinked(int slicer);
@@ -189,6 +245,10 @@ class vvSlicerManager : public QObject {
     mLinkedId.remove(oldId); 
   }
   
+  std::list<std::string> GetLinks() const {
+    return mLinkedId;
+  }
+  
   bool IsLinked() {
     return mLinkedId.size() > 0;
   }
@@ -199,11 +259,14 @@ class vvSlicerManager : public QObject {
   void Reload();
   void ReloadOverlay();
   void ReloadFusion();
+  void ReloadFusionSequence();
   void ReloadVF();
 
   void Activated();
   void Picked();
   void UpdateInfoOnCursorPosition(int slicer);
+  void EmitMousePositionUpdated(int slicer);
+  void EmitKeyPressed(std::string keyPress);
   void UpdateWindowLevel();
   void UpdateSlice(int slicer);
   void UpdateTSlice(int slicer);
@@ -211,7 +274,8 @@ class vvSlicerManager : public QObject {
   void SetSlicingPreset(SlicingPresetType preset);
 
   vvLandmarks *GetLandmarks();
-  void AddLandmark(float x,float y,float z,float t);
+  void AddNewLandmark(float x,float y,float z,float t);
+  void AddLandmarkProfile(float x,float y,float z,float t);
   
   void NextImage(int slicer);
   void PrevImage(int slicer);
@@ -219,16 +283,24 @@ class vvSlicerManager : public QObject {
   void VerticalSliderHasChanged(int slicer, int slice);
   double GetScalarComponentAsDouble(vtkImageData *image, double X, double Y, double Z, int component=0);
 
+public slots:
+  void AddLandmark(float x,float y,float z,float t);
+  void UpdateLandmark();
+
 signals :
+  void callAddLandmark(float x,float y,float z,float t);
   void currentImageChanged(std::string id);
   void currentPickedImageChanged(std::string id);
   void UpdatePosition(int visibility,double x, double y, double z, double X, double Y, double Z, double value);
   void UpdateVector(int display, double x, double y, double z, double value);
   void UpdateOverlay(int display, double valueOver, double valueRef);
   void UpdateFusion(int display, double valueFus);
+  void UpdateFusionSequence(int fusionSequenceFrameIndex, bool fusionSequenceSpatialSyncFlag, unsigned int fusionSequenceNbFrames);
+  void MousePositionUpdatedSignal(int slicer);
+  void KeyPressedSignal(std::string KeyPressed);
   void UpdateOrientation(int slicer, int orientation);
   void UpdateSlice(int slicer, int slice);
-  void UpdateTSlice(int slicer, int slice);
+  void UpdateTSlice(int slicer, int slice, int code);
   void UpdateSliceRange(int slice, int min, int max, int tmin, int tmax);
   void WindowLevelChanged();
   void UpdateLinkManager(std::string, int slicer, double x, double y, double z, int temps);
@@ -240,9 +312,11 @@ signals :
 
 protected:
   std::vector< vtkSmartPointer<vvSlicer> > mSlicers;
+  int mSelectedSlicer;
   vvImageReader::Pointer mReader;
   vvImageReader::Pointer mOverlayReader;
   vvImageReader::Pointer mFusionReader;
+  vvImageReader::Pointer mFusionSequenceReader;
   vvImageReader::Pointer mVectorReader;
   vvImage::Pointer mImage;
   vvImage::Pointer mVF;
@@ -256,6 +330,16 @@ protected:
   double mFusionLevel;
   bool mFusionShowLegend;
 
+  //Fusion of sequences related data
+  int mFusionSequenceInvolvementCode; //-1: not involved, 0: main sequence(CT), 1: secondary sequence (US)
+  int mFusionSequenceIndexLinkedManager; //index of the other sequence involved in the visualization
+  int mFusionSequenceFrameIndex; //temporal index of the current image in the sequence (<->TSlice)
+  unsigned int mFusionSequenceNbFrames; //number of frames in the temporal sequence
+  bool mFusionSequenceSpatialSyncFlag, mFusionSequenceTemporalSyncFlag; //flags indicating whether the spatial/temporal synchronization are actives
+  vtkSmartPointer<vtkMatrix4x4> mFusionSequenceMainTransform;
+  std::vector< vtkSmartPointer<vtkMatrix4x4> > mFusionSequenceListInitialTransformMatrices;
+  std::vector<unsigned> mFusionSequenceCorrespondances;
+  
   int mPreset;
   SlicingPresetType mSlicingPreset;
   vvImageReader::LoadedImageType mType;