/*=========================================================================
+ Program: vv http://www.creatis.insa-lyon.fr/rio/vv
- Program: vv
- Module: $RCSfile: vvToolCropImage.cxx,v $
- Language: C++
- Date: $Date: 2010/03/24 10:48:18 $
- Version: $Revision: 1.5 $
- Author : David Sarrut (david.sarrut@creatis.insa-lyon.fr)
+ Authors belong to:
+ - University of LYON http://www.universite-lyon.fr/
+ - Léon Bérard cancer center http://www.centreleonberard.fr
+ - CREATIS CNRS laboratory http://www.creatis.insa-lyon.fr
- Copyright (C) 2008
- Léon Bérard cancer center http://oncora1.lyon.fnclcc.fr
- CREATIS-LRMN http://www.creatis.insa-lyon.fr
+ This software is distributed WITHOUT ANY WARRANTY; without even
+ the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR
+ PURPOSE. See the copyright notices for more information.
- This program is free software: you can redistribute it and/or modify
- it under the terms of the GNU General Public License as published by
- the Free Software Foundation, version 3 of the License.
+ It is distributed under dual licence
- This program is distributed in the hope that it will be useful,
- but WITHOUT ANY WARRANTY; without even the implied warranty of
- MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
- GNU General Public License for more details.
+ - BSD See included LICENSE.txt file
+ - CeCILL-B http://www.cecill.info/licences/Licence_CeCILL-B_V1-en.html
+===========================================================================**/
- You should have received a copy of the GNU General Public License
- along with this program. If not, see <http://www.gnu.org/licenses/>.
+// vv
+#include "vvToolCropImage.h"
+#include "vvSlicer.h"
- =========================================================================*/
+// clitk
+#include "clitkCropImage_ggo.h"
+#include "clitkCropImageGenericFilter.h"
+#include "clitkExceptionObject.h"
-#include "vvToolCropImage.h"
+// qt
#include <QComboBox>
#include <QCursor>
#include <QApplication>
+#include <QMessageBox>
+#include <QSignalMapper>
+
+// vtk
+#include <vtkVersion.h>
+#include <vtkStreamingDemandDrivenPipeline.h>
+#include <vtkInformation.h>
#include <vtkImageClip.h>
#include <vtkImageTranslateExtent.h>
#include <vtkImageData.h>
#include <vtkSmartPointer.h>
-#include "vvSlicer.h"
//------------------------------------------------------------------------------
// Create the tool and automagically (I like this word) insert it in
ADD_TOOL(vvToolCropImage);
//------------------------------------------------------------------------------
-
+//same order of int* returned by VtkImageData::WholeExtent
+enum sliderId {xmin, xmax, ymin, ymax, zmin, zmax, tmin, tmax};
//------------------------------------------------------------------------------
vvToolCropImage::vvToolCropImage(vvMainWindowBase * parent, Qt::WindowFlags f):
- vvToolWidgetBase(parent, f),
- vvToolBase<vvToolCropImage>(parent),
- Ui::vvToolCropImage() {
+ vvToolWidgetBase(parent, f),
+ vvToolBase<vvToolCropImage>(parent),
+ Ui::vvToolCropImage(),mSliders(8)
+{
// GUI Initialization
Ui_vvToolCropImage::setupUi(mToolWidget);
+ mTLabel1->setHidden(true);
+ mTLabel2->setHidden(true);
+ tminSlider->setHidden(true);
+ tmaxSlider->setHidden(true);
+ spin_tmin->setHidden(true);
+ spin_tmax->setHidden(true);
+ mLabelTimeCropping->setHidden(true);
// Set how many inputs are needed for this tool
AddInputSelector("Select one image");
+
+ mSliders[xmin]=xminSlider;
+ mSliders[xmax]=xmaxSlider;
+ mSliders[ymin]=yminSlider;
+ mSliders[ymax]=ymaxSlider;
+ mSliders[zmin]=zminSlider;
+ mSliders[zmax]=zmaxSlider;
+ mSliders[tmin]=tminSlider;
+ mSliders[tmax]=tmaxSlider;
+
+ // Record initial extend
+ mReducedExtent = new int[6];
+ mInitialExtent = new int[6];
}
//------------------------------------------------------------------------------
//------------------------------------------------------------------------------
-vvToolCropImage::~vvToolCropImage() {
-
-}
-//------------------------------------------------------------------------------
-
-
-//------------------------------------------------------------------------------
-bool vvToolCropImage::close() {
- for(int i=0; i<6; i++) mReducedExtent[i] = mInitialExtent[i];
- UpdateExtent();
- return vvToolWidgetBase::close();
-}
-//------------------------------------------------------------------------------
-
-
-//------------------------------------------------------------------------------
-void vvToolCropImage::reject() {
- for(int i=0; i<6; i++) mReducedExtent[i] = mInitialExtent[i];
- UpdateExtent();
- return vvToolWidgetBase::reject();
-}
-//------------------------------------------------------------------------------
-
-
-//------------------------------------------------------------------------------
-void vvToolCropImage::sliderXMinValueChanged(int s) {
- xmaxSlider->setMinimum(xminSlider->value());
- mReducedExtent[0] = xminSlider->value();
- UpdateExtent();
-}
-//------------------------------------------------------------------------------
-
-
-//------------------------------------------------------------------------------
-void vvToolCropImage::sliderXMaxValueChanged(int s) {
- xminSlider->setMaximum(xmaxSlider->value());
- mReducedExtent[1] = xmaxSlider->value();
- UpdateExtent();
+vvToolCropImage::~vvToolCropImage()
+{
+ delete [] mReducedExtent;
+ delete [] mInitialExtent;
}
//------------------------------------------------------------------------------
//------------------------------------------------------------------------------
-void vvToolCropImage::sliderYMinValueChanged(int s) {
- ymaxSlider->setMinimum(yminSlider->value());
- mReducedExtent[2] = yminSlider->value();
- UpdateExtent();
+void vvToolCropImage::closeEvent(QCloseEvent *event)
+{
+ if(mCurrentSlicerManager){
+// Reset extends
+ for(int i=0; i<6; i++){
+ mReducedExtent[i] = mInitialExtent[i];
+ }
+ for(int i=0; i<mCurrentSlicerManager->GetNumberOfSlicers(); i++)
+ mCurrentSlicerManager->GetSlicer(i)->EnableReducedExtent(false);
+ UpdateExtent();
+
+ mCurrentSlicerManager->GetImage()->GetTransform()[0]->SetMatrix(mConcatenedTransform);
+ for (int i=0; i<mCurrentSlicerManager->GetNumberOfSlicers(); i++) {
+ mCurrentSlicerManager->GetSlicer(i)->ResetCamera();
+ mCurrentSlicerManager->GetSlicer(i)->Render();
+ mCurrentSlicerManager->UpdateLinkedNavigation( mCurrentSlicerManager->GetSlicer(i) );
+ }
+ }
+ vvToolWidgetBase::closeEvent(event);
}
//------------------------------------------------------------------------------
//------------------------------------------------------------------------------
-void vvToolCropImage::sliderYMaxValueChanged(int s) {
- yminSlider->setMaximum(ymaxSlider->value());
- mReducedExtent[3] = ymaxSlider->value();
- UpdateExtent();
+bool vvToolCropImage::close()
+{
+ return vvToolWidgetBase::close();
}
//------------------------------------------------------------------------------
//------------------------------------------------------------------------------
-void vvToolCropImage::sliderZMinValueChanged(int s) {
- zmaxSlider->setMinimum(zminSlider->value());
- mReducedExtent[4] = zminSlider->value();
+void vvToolCropImage::reject()
+{
+ for(int i=0; i<mExtentSize; i++)
+ mReducedExtent[i] = mInitialExtent[i];
+ for(int i=0; i<mCurrentSlicerManager->GetNumberOfSlicers(); i++)
+ mCurrentSlicerManager->GetSlicer(i)->EnableReducedExtent(false);
UpdateExtent();
+ return vvToolWidgetBase::reject();
}
//------------------------------------------------------------------------------
//------------------------------------------------------------------------------
-void vvToolCropImage::sliderZMaxValueChanged(int s) {
- zminSlider->setMaximum(zmaxSlider->value());
- mReducedExtent[5] = zmaxSlider->value();
+void vvToolCropImage::sliderValueChanged(int dim)
+{
+ int dimMin = dim;
+ if(dim%2==0){//case we are minimum
+ mSliders[dim+1]->setMinimum(mSliders[dim]->value());
+ }else {
+ mSliders[--dimMin]->setMaximum(mSliders[dim]->value());
+ }
+ mReducedExtent[dim] = mSliders[dim]->value() + mInitialExtent[dimMin];
UpdateExtent();
}
//------------------------------------------------------------------------------
//------------------------------------------------------------------------------
-// void vvToolCropImage::sliderTMinValueChanged(int s) {
-// tmaxSlider->setMinimum(tminSlider->value());
-// mReducedExtent[6] = tminSlider->value();
-// UpdateExtent();
-// }
-//------------------------------------------------------------------------------
-
-
-//------------------------------------------------------------------------------
-// void vvToolCropImage::sliderTMaxValueChanged(int s) {
-// tminSlider->setMaximum(tmaxSlider->value());
-// mReducedExtent[7] = tmaxSlider->value();
-// UpdateExtent();
-// }
-//------------------------------------------------------------------------------
-
-
-//------------------------------------------------------------------------------
-void vvToolCropImage::UpdateExtent() {
- for(int i=0; i<mCurrentSlicerManager->NumberOfSlicers(); i++) {
+void vvToolCropImage::UpdateExtent()
+{
+ for(int i=0; i<mCurrentSlicerManager->GetNumberOfSlicers(); i++) {
mCurrentSlicerManager->GetSlicer(i)->SetReducedExtent(mReducedExtent);
- mCurrentSlicerManager->GetSlicer(i)->ForceUpdateDisplayExtent();
- mCurrentSlicerManager->GetSlicer(i)->Render();
+ mCurrentSlicerManager->GetSlicer(i)->ForceUpdateDisplayExtent();
+ mCurrentSlicerManager->GetSlicer(i)->Render();
}
}
//------------------------------------------------------------------------------
//------------------------------------------------------------------------------
-void vvToolCropImage::InputIsSelected(vvSlicerManager * slicer) {
+void vvToolCropImage::InputIsSelected(vvSlicerManager * slicer)
+{
+ //Save the current transformation
+ mConcatenedTransform = vtkSmartPointer<vtkMatrix4x4>::New();
+ mConcatenedTransform->DeepCopy(slicer->GetSlicer(0)->GetConcatenatedTransform()->GetMatrix());
+ vtkSmartPointer<vtkMatrix4x4> matrix = vtkSmartPointer<vtkMatrix4x4>::New();
+ matrix->Identity();
+ mCurrentSlicerManager->GetImage()->GetTransform()[0]->SetMatrix(matrix);
+ for (int i=0; i<mCurrentSlicerManager->GetNumberOfSlicers(); i++) {
+ mCurrentSlicerManager->GetSlicer(i)->ResetCamera();
+ mCurrentSlicerManager->GetSlicer(i)->Render();
+ mCurrentSlicerManager->UpdateLinkedNavigation( mCurrentSlicerManager->GetSlicer(i) );
+ }
// Change interface according to number of dimension
mExtentSize = 2*slicer->GetDimension();
- // if (slicer->GetDimension()<4) {
- // mTLabel1->setHidden(true);
- // mTLabel2->setHidden(true);
- // tminSlider->setHidden(true);
- // tmaxSlider->setHidden(true);
- // spin_tmin->setHidden(true);
- // spin_tmax->setHidden(true);
- // }
+ if (slicer->GetDimension()<4) {
+ mTLabel1->setHidden(true);
+ mTLabel2->setHidden(true);
+ tminSlider->setHidden(true);
+ tmaxSlider->setHidden(true);
+ spin_tmin->setHidden(true);
+ spin_tmax->setHidden(true);
+ mLabelTimeCropping->setHidden(true);
+ }
if (slicer->GetDimension()<3) {
mZLabel1->setHidden(true);
mZLabel2->setHidden(true);
spin_zmin->setHidden(true);
spin_zmax->setHidden(true);
}
-
- // Record initial extend
- mReducedExtent = new int[mExtentSize];
- mInitialExtent = new int[mExtentSize];
- mReducedExtent = mCurrentSlicerManager->GetImage()->GetFirstVTKImageData()->GetWholeExtent();
- for(int i=0; i<6; i++) mInitialExtent[i] = mReducedExtent[i];
- for(int i=0; i<mCurrentSlicerManager->NumberOfSlicers(); i++) {
- DD(i);
- DD(mReducedExtent[i]);
- DD(mInitialExtent[i]);
+#if VTK_MAJOR_VERSION <= 5
+ int *a = mCurrentImage->GetFirstVTKImageData()->GetWholeExtent();
+#else
+ int *a = mCurrentImage->GetFirstVTKImageData()->GetInformation()->Get(vtkDataObject::DATA_EXTENT());
+#endif
+ for(int i=0; i<6; i++){
+ mInitialExtent[i] = a[i];
+ mReducedExtent[i] = a[i];
+ }
+ for(int i=0; i<mCurrentSlicerManager->GetNumberOfSlicers(); i++) {
mCurrentSlicerManager->GetSlicer(i)->EnableReducedExtent(true);
+ mCurrentSlicerManager->GetSlicer(i)->SetReducedExtent(mInitialExtent);
}
-
- // Not now ....
- // mIntensitySlider->SetImage(mCurrentImage);
- //mIntensitySlider->setEnabled(false);
-
- // Set initial sliders values
- std::vector<int> imsize = mCurrentSlicerManager->GetImage()->GetSize();
- xminSlider->setMaximum(imsize[0]-1);
- xmaxSlider->setMaximum(imsize[0]-1);
- xmaxSlider->setValue(imsize[0]-1);
-
- yminSlider->setMaximum(imsize[1]-1);
- ymaxSlider->setMaximum(imsize[1]-1);
- ymaxSlider->setValue(imsize[1]-1);
- if (slicer->GetDimension() >2) {
- zminSlider->setMaximum(imsize[2]-1);
- zmaxSlider->setMaximum(imsize[2]-1);
- zmaxSlider->setValue(imsize[2]-1);
+// Set initial sliders values
+ int w_ext[6], imsize[4];
+ mCurrentSlicerManager->GetSlicer(0)->GetRegisterExtent(w_ext);
+ for(int dim=0; dim<slicer->GetDimension() && dim<3; ++dim){
+ imsize[dim] = w_ext[2*dim+1] - w_ext[2*dim] +1;
+ mSliders[dim*2]->setMaximum(imsize[dim]-1);
+ mSliders[dim*2+1]->setMaximum(imsize[dim]-1);
+ mSliders[dim*2+1]->setValue(imsize[dim]-1);
}
-
- // if (slicer->GetDimension() >3) {
- // tminSlider->setMaximum(imsize[3]-1);
- // tmaxSlider->setMaximum(imsize[3]-1);
- // tmaxSlider->setValue(imsize[3]-1);
- // }
-
spin_xmin->setMaximum(imsize[0]-1);
spin_xmax->setMaximum(imsize[0]-1);
spin_xmax->setValue(imsize[0]-1);
spin_zmax->setMaximum(imsize[2]-1);
spin_zmax->setValue(imsize[2]-1);
}
-
- // if (slicer->GetDimension() >3) {
- // spin_tmin->setMaximum(imsize[3]-1);
- // spin_tmax->setMaximum(imsize[3]-1);
- // spin_tmax->setValue(imsize[3]-1);
- // }
-
- // Connect
- connect(xminSlider, SIGNAL(valueChanged(int)), this, SLOT(sliderXMinValueChanged(int)));
- connect(xmaxSlider, SIGNAL(valueChanged(int)), this, SLOT(sliderXMaxValueChanged(int)));
- connect(yminSlider, SIGNAL(valueChanged(int)), this, SLOT(sliderYMinValueChanged(int)));
- connect(ymaxSlider, SIGNAL(valueChanged(int)), this, SLOT(sliderYMaxValueChanged(int)));
- connect(zminSlider, SIGNAL(valueChanged(int)), this, SLOT(sliderZMinValueChanged(int)));
- connect(zmaxSlider, SIGNAL(valueChanged(int)), this, SLOT(sliderZMaxValueChanged(int)));
- // connect(tminSlider, SIGNAL(valueChanged(int)), this, SLOT(sliderTMinValueChanged(int)));
- // connect(tmaxSlider, SIGNAL(valueChanged(int)), this, SLOT(sliderTMaxValueChanged(int)));
-
- // connect(mIntensitySlider, SIGNAL(valueChanged(double)), this, SLOT(autoCropValueChanged(double)));
+
+ if (slicer->GetDimension() >3) {
+ spin_tmin->setMaximum(imsize[3]-1);
+ spin_tmax->setMaximum(imsize[3]-1);
+ spin_tmax->setValue(imsize[3]-1);
+ }
+
+ QSignalMapper* signalMapper = new QSignalMapper(this);
+ connect(signalMapper, SIGNAL(mapped(int)), this, SLOT(sliderValueChanged(int)));
+ for(unsigned int i=0; i<mSliders.size(); ++i){
+ signalMapper->setMapping(mSliders[i], i);
+ connect(mSliders[i], SIGNAL(valueChanged(int)), signalMapper, SLOT(map()));
+ }
UpdateExtent();
}
//------------------------------------------------------------------------------
//------------------------------------------------------------------------------
-void vvToolCropImage::autoCropValueChanged(double v) {
- // DD(v);
- // vvImageToITKImageVector -> TODO a generic method
- // then sliceriterator on each dimension from in to max
- // ==> make a clitkGenericFilter even for the regular apply ...
+void vvToolCropImage::autoCropValueChanged(double v)
+{
+ //TODO
}
//------------------------------------------------------------------------------
//------------------------------------------------------------------------------
-void vvToolCropImage::apply() {
-
+void vvToolCropImage::apply()
+{
+ if (!mCurrentSlicerManager) close();
QApplication::setOverrideCursor(QCursor(Qt::WaitCursor));
- vvImage::Pointer mResult=vvImage::New();
- vvImage::Pointer image= mCurrentSlicerManager->GetImage();
- for (std::vector<vtkImageData*>::const_iterator i=image->GetVTKImages().begin();
- i!=image->GetVTKImages().end();i++)
- {
- vtkSmartPointer<vtkImageClip> filter=vtkSmartPointer<vtkImageClip>::New();
- ///Vtk is very weird, you need to "translate the extent" to get the correct origin
- //http://markmail.org/message/vndc2tr6kcabiakp#query:vtkImageClip%20origin+page:1+mid:6na7y57floutklvz+state:results
- vtkSmartPointer<vtkImageTranslateExtent> translate=vtkSmartPointer<vtkImageTranslateExtent>::New();
- filter->SetInput(*i);
- filter->SetOutputWholeExtent(xminSlider->value(),xmaxSlider->value(),
- yminSlider->value(),ymaxSlider->value(),
- zminSlider->value(),zmaxSlider->value());
- translate->SetTranslation(-xminSlider->value(),-yminSlider->value(),-zminSlider->value());
- translate->SetInput(filter->GetOutput());
- filter->ClipDataOn(); //Really create a cropped copy of the image
- translate->Update();
- vtkImageData* output=vtkImageData::New();
- output->ShallowCopy(translate->GetOutput());
- mResult->AddImage(output);
- }
+
+ // Typedef
+ typedef args_info_clitkCropImage ArgsInfoType;
+ typedef clitk::CropImageGenericFilter CropFilterType;
+
+ // Get options
+ ArgsInfoType mArgsInfo;
+ cmdline_parser_clitkCropImage_init(&mArgsInfo); // Initialisation to default
+ int n = mCurrentSlicerManager->GetDimension()*2; // 2D and 3D only
+ mArgsInfo.boundingBox_given = n;
+ mArgsInfo.boundingBox_arg = new int[n];
+
+ for(int dim=0; dim<mCurrentSlicerManager->GetDimension() && dim<3; ++dim){
+ mArgsInfo.boundingBox_arg[dim*2] = mSliders[dim*2]->value();
+ mArgsInfo.boundingBox_arg[dim*2+1] = mSliders[dim*2+1]->value();
+ }
+ if (n>6) { // 4D
+ mArgsInfo.boundingBox_arg[6] = 0;
+ mArgsInfo.boundingBox_arg[7] = mCurrentImage->GetSize()[3]-1;
+ }
+ // We MUST reset initial extend to input image before using the
+ // filter to retrieve the correct image size
+ for(int i=0; i<6; i++) {
+ mReducedExtent[i] = mInitialExtent[i];
+ }
+
+ UpdateExtent();
+ // Main filter
+ CropFilterType::Pointer filter = CropFilterType::New();
+ filter->SetInputVVImage(mCurrentImage);
+ filter->SetArgsInfo(mArgsInfo);
+
+ // Go ! (not threaded)
+ try{
+ filter->Update();
+ }
+ catch(clitk::ExceptionObject & e) {
+ DD(e.what());
+ QApplication::restoreOverrideCursor();
+ delete [] mArgsInfo.boundingBox_arg;
+ close();
+ }
+ std::ostringstream croppedImageName;
+ croppedImageName << "Cropped_" << mCurrentSlicerManager->GetSlicer(0)->GetFileName() << ".mhd";
+ // Retrieve result and display it
+ vvImage::Pointer output = filter->GetOutputVVImage();
+
+ output->GetTransform()[0]->SetMatrix(mConcatenedTransform);
+
+ AddImage(output,croppedImageName.str());
+
+ // End
QApplication::restoreOverrideCursor();
- std::ostringstream osstream;
- osstream << "Crop_" << mCurrentSlicerManager->GetSlicer(0)->GetFileName() << ".mhd";
- AddImage(mResult, osstream.str());
+ delete [] mArgsInfo.boundingBox_arg;
close();
}
//------------------------------------------------------------------------------
git://git.creatis.insa-lyon.fr / clitk.git / blobdiff