+/*=========================================================================
+ Program: vv http://www.creatis.insa-lyon.fr/rio/vv
+
+ Authors belong to:
+ - University of LYON http://www.universite-lyon.fr/
+ - Léon Bérard cancer center http://oncora1.lyon.fnclcc.fr
+ - CREATIS CNRS laboratory http://www.creatis.insa-lyon.fr
+
+ This software is distributed WITHOUT ANY WARRANTY; without even
+ the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR
+ PURPOSE. See the copyright notices for more information.
+
+ It is distributed under dual licence
+
+ - BSD See included LICENSE.txt file
+ - CeCILL-B http://www.cecill.info/licences/Licence_CeCILL-B_V1-en.html
+======================================================================-====*/
+
+// vv
#include "vvToolCropImage.h"
+#include "vvSlicer.h"
+
+// clitk
+#include "clitkCropImage_ggo.h"
+#include "clitkCropImageGenericFilter.h"
+#include "clitkExceptionObject.h"
+
+// qt
#include <QComboBox>
#include <QCursor>
#include <QApplication>
+#include <QMessageBox>
+
+// vtk
#include <vtkImageClip.h>
#include <vtkImageTranslateExtent.h>
#include <vtkImageData.h>
#include <vtkSmartPointer.h>
-#include "vvSlicer.h"
//------------------------------------------------------------------------------
// Create the tool and automagically (I like this word) insert it in
//------------------------------------------------------------------------------
vvToolCropImage::vvToolCropImage(vvMainWindowBase * parent, Qt::WindowFlags f):
- vvToolWidgetBase(parent, f),
- vvToolBase<vvToolCropImage>(parent),
- Ui::vvToolCropImage() {
+ vvToolWidgetBase(parent, f),
+ vvToolBase<vvToolCropImage>(parent),
+ Ui::vvToolCropImage()
+{
// GUI Initialization
Ui_vvToolCropImage::setupUi(mToolWidget);
+ // mTLabel2->setHidden(false);
+ // tminSlider->setHidden(false);
+ // tmaxSlider->setHidden(false);
+ // spin_tmin->setHidden(false);
+ // spin_tmax->setHidden(false);
+ // mLabelTimeCropping->setHidden(false);
+ mTLabel1->setHidden(true);
+ mTLabel2->setHidden(true);
+ tminSlider->setHidden(true);
+ tmaxSlider->setHidden(true);
+ spin_tmin->setHidden(true);
+ spin_tmax->setHidden(true);
+ mLabelTimeCropping->setHidden(true);
// Set how many inputs are needed for this tool
AddInputSelector("Select one image");
//------------------------------------------------------------------------------
-vvToolCropImage::~vvToolCropImage() {
+vvToolCropImage::~vvToolCropImage()
+{
}
//------------------------------------------------------------------------------
//------------------------------------------------------------------------------
-bool vvToolCropImage::close() {
- for(int i=0; i<6; i++) mReducedExtent[i] = mInitialExtent[i];
+void vvToolCropImage::closeEvent(QCloseEvent *event)
+{
+ // Reset extends
+ for(int i=0; i<mExtentSize; i++) mReducedExtent[i] = mInitialExtent[i];
UpdateExtent();
- return vvToolWidgetBase::close();
+ event->accept();
+}
+//------------------------------------------------------------------------------
+
+
+//------------------------------------------------------------------------------
+bool vvToolCropImage::close()
+{
+ return vvToolWidgetBase::close();
}
//------------------------------------------------------------------------------
//------------------------------------------------------------------------------
-void vvToolCropImage::reject() {
- for(int i=0; i<6; i++) mReducedExtent[i] = mInitialExtent[i];
+void vvToolCropImage::reject()
+{
+ for(int i=0; i<mExtentSize; i++) mReducedExtent[i] = mInitialExtent[i];
UpdateExtent();
- return vvToolWidgetBase::reject();
+ return vvToolWidgetBase::reject();
}
//------------------------------------------------------------------------------
//------------------------------------------------------------------------------
-void vvToolCropImage::sliderXMinValueChanged(int s) {
+void vvToolCropImage::sliderXMinValueChanged(int s)
+{
xmaxSlider->setMinimum(xminSlider->value());
mReducedExtent[0] = xminSlider->value();
UpdateExtent();
//------------------------------------------------------------------------------
-void vvToolCropImage::sliderXMaxValueChanged(int s) {
+void vvToolCropImage::sliderXMaxValueChanged(int s)
+{
xminSlider->setMaximum(xmaxSlider->value());
mReducedExtent[1] = xmaxSlider->value();
UpdateExtent();
//------------------------------------------------------------------------------
-void vvToolCropImage::sliderYMinValueChanged(int s) {
+void vvToolCropImage::sliderYMinValueChanged(int s)
+{
ymaxSlider->setMinimum(yminSlider->value());
mReducedExtent[2] = yminSlider->value();
UpdateExtent();
//------------------------------------------------------------------------------
-void vvToolCropImage::sliderYMaxValueChanged(int s) {
+void vvToolCropImage::sliderYMaxValueChanged(int s)
+{
yminSlider->setMaximum(ymaxSlider->value());
mReducedExtent[3] = ymaxSlider->value();
UpdateExtent();
//------------------------------------------------------------------------------
-void vvToolCropImage::sliderZMinValueChanged(int s) {
+void vvToolCropImage::sliderZMinValueChanged(int s)
+{
zmaxSlider->setMinimum(zminSlider->value());
mReducedExtent[4] = zminSlider->value();
UpdateExtent();
//------------------------------------------------------------------------------
-void vvToolCropImage::sliderZMaxValueChanged(int s) {
+void vvToolCropImage::sliderZMaxValueChanged(int s)
+{
zminSlider->setMaximum(zmaxSlider->value());
mReducedExtent[5] = zmaxSlider->value();
UpdateExtent();
//------------------------------------------------------------------------------
-// void vvToolCropImage::sliderTMinValueChanged(int s) {
-// tmaxSlider->setMinimum(tminSlider->value());
-// mReducedExtent[6] = tminSlider->value();
-// UpdateExtent();
-// }
+void vvToolCropImage::sliderTMinValueChanged(int s) {
+ tmaxSlider->setMinimum(tminSlider->value());
+ mReducedExtent[6] = tminSlider->value();
+ UpdateExtent();
+}
//------------------------------------------------------------------------------
//------------------------------------------------------------------------------
-// void vvToolCropImage::sliderTMaxValueChanged(int s) {
-// tminSlider->setMaximum(tmaxSlider->value());
-// mReducedExtent[7] = tmaxSlider->value();
-// UpdateExtent();
-// }
+void vvToolCropImage::sliderTMaxValueChanged(int s) {
+ tminSlider->setMaximum(tmaxSlider->value());
+ mReducedExtent[7] = tmaxSlider->value();
+ UpdateExtent();
+}
//------------------------------------------------------------------------------
//------------------------------------------------------------------------------
-void vvToolCropImage::UpdateExtent() {
- for(int i=0; i<mCurrentSlicerManager->NumberOfSlicers(); i++) {
+void vvToolCropImage::UpdateExtent()
+{
+ for(int i=0; i<mCurrentSlicerManager->GetNumberOfSlicers(); i++) {
mCurrentSlicerManager->GetSlicer(i)->SetReducedExtent(mReducedExtent);
- mCurrentSlicerManager->GetSlicer(i)->ForceUpdateDisplayExtent();
- mCurrentSlicerManager->GetSlicer(i)->Render();
+ mCurrentSlicerManager->GetSlicer(i)->ForceUpdateDisplayExtent();
+ mCurrentSlicerManager->GetSlicer(i)->Render();
}
}
//------------------------------------------------------------------------------
//------------------------------------------------------------------------------
-void vvToolCropImage::InputIsSelected(vvSlicerManager * slicer) {
+void vvToolCropImage::InputIsSelected(vvSlicerManager * slicer)
+{
// Change interface according to number of dimension
mExtentSize = 2*slicer->GetDimension();
- // if (slicer->GetDimension()<4) {
- // mTLabel1->setHidden(true);
- // mTLabel2->setHidden(true);
- // tminSlider->setHidden(true);
- // tmaxSlider->setHidden(true);
- // spin_tmin->setHidden(true);
- // spin_tmax->setHidden(true);
- // }
+ if (slicer->GetDimension()<4) {
+ mTLabel1->setHidden(true);
+ mTLabel2->setHidden(true);
+ tminSlider->setHidden(true);
+ tmaxSlider->setHidden(true);
+ spin_tmin->setHidden(true);
+ spin_tmax->setHidden(true);
+ mLabelTimeCropping->setHidden(true);
+ }
if (slicer->GetDimension()<3) {
mZLabel1->setHidden(true);
mZLabel2->setHidden(true);
spin_zmin->setHidden(true);
spin_zmax->setHidden(true);
}
-
+
// Record initial extend
mReducedExtent = new int[mExtentSize];
mInitialExtent = new int[mExtentSize];
mReducedExtent = mCurrentSlicerManager->GetImage()->GetFirstVTKImageData()->GetWholeExtent();
- for(int i=0; i<6; i++) mInitialExtent[i] = mReducedExtent[i];
- for(int i=0; i<mCurrentSlicerManager->NumberOfSlicers(); i++) {
- //DD(i);
- //DD(mReducedExtent[i]);
- //DD(mInitialExtent[i]);
+ for(int i=0; i<mExtentSize; i++) mInitialExtent[i] = mReducedExtent[i];
+ for(int i=0; i<mCurrentSlicerManager->GetNumberOfSlicers(); i++) {
mCurrentSlicerManager->GetSlicer(i)->EnableReducedExtent(true);
}
-
- // Not now ....
- // mIntensitySlider->SetImage(mCurrentImage);
- //mIntensitySlider->setEnabled(false);
// Set initial sliders values
std::vector<int> imsize = mCurrentSlicerManager->GetImage()->GetSize();
zmaxSlider->setValue(imsize[2]-1);
}
- // if (slicer->GetDimension() >3) {
- // tminSlider->setMaximum(imsize[3]-1);
- // tmaxSlider->setMaximum(imsize[3]-1);
- // tmaxSlider->setValue(imsize[3]-1);
- // }
+ if (slicer->GetDimension() >3) {
+ tminSlider->setMaximum(imsize[3]-1);
+ tmaxSlider->setMaximum(imsize[3]-1);
+ tmaxSlider->setValue(imsize[3]-1);
+ }
spin_xmin->setMaximum(imsize[0]-1);
spin_xmax->setMaximum(imsize[0]-1);
spin_zmax->setMaximum(imsize[2]-1);
spin_zmax->setValue(imsize[2]-1);
}
-
- // if (slicer->GetDimension() >3) {
- // spin_tmin->setMaximum(imsize[3]-1);
- // spin_tmax->setMaximum(imsize[3]-1);
- // spin_tmax->setValue(imsize[3]-1);
- // }
-
+
+ if (slicer->GetDimension() >3) {
+ spin_tmin->setMaximum(imsize[3]-1);
+ spin_tmax->setMaximum(imsize[3]-1);
+ spin_tmax->setValue(imsize[3]-1);
+ }
+
// Connect
connect(xminSlider, SIGNAL(valueChanged(int)), this, SLOT(sliderXMinValueChanged(int)));
connect(xmaxSlider, SIGNAL(valueChanged(int)), this, SLOT(sliderXMaxValueChanged(int)));
connect(ymaxSlider, SIGNAL(valueChanged(int)), this, SLOT(sliderYMaxValueChanged(int)));
connect(zminSlider, SIGNAL(valueChanged(int)), this, SLOT(sliderZMinValueChanged(int)));
connect(zmaxSlider, SIGNAL(valueChanged(int)), this, SLOT(sliderZMaxValueChanged(int)));
- // connect(tminSlider, SIGNAL(valueChanged(int)), this, SLOT(sliderTMinValueChanged(int)));
- // connect(tmaxSlider, SIGNAL(valueChanged(int)), this, SLOT(sliderTMaxValueChanged(int)));
-
+ connect(tminSlider, SIGNAL(valueChanged(int)), this, SLOT(sliderTMinValueChanged(int)));
+ connect(tmaxSlider, SIGNAL(valueChanged(int)), this, SLOT(sliderTMaxValueChanged(int)));
+
+ // connect(mCurrentSlicerManager,SIGNAL(UpdateSlice(int,int)),this,SLOT(UpdateExtent()));
+ //connect(mCurrentSlicerManager,SIGNAL(UpdateTSlice(int,int)),this,SLOT(UpdateExtent()));
+
// connect(mIntensitySlider, SIGNAL(valueChanged(double)), this, SLOT(autoCropValueChanged(double)));
UpdateExtent();
}
//------------------------------------------------------------------------------
-void vvToolCropImage::autoCropValueChanged(double v) {
- // DD(v);
- // vvImageToITKImageVector -> TODO a generic method
- // then sliceriterator on each dimension from in to max
- // ==> make a clitkGenericFilter even for the regular apply ...
+void vvToolCropImage::autoCropValueChanged(double v)
+{
+ //TODO
}
//------------------------------------------------------------------------------
//------------------------------------------------------------------------------
-void vvToolCropImage::apply() {
+void vvToolCropImage::apply()
+{
+ if (!mCurrentSlicerManager) close();
+ QApplication::setOverrideCursor(QCursor(Qt::WaitCursor));
+
+ // Typedef
+ typedef args_info_clitkCropImage ArgsInfoType;
+ typedef clitk::CropImageGenericFilter CropFilterType;
+
+ // Get options
+ ArgsInfoType mArgsInfo;
+ cmdline_parser_clitkCropImage_init(&mArgsInfo); // Initialisation to default
+ int n = mCurrentSlicerManager->GetDimension()*2; // 2D and 3D only
+ mArgsInfo.boundingBox_given = n;
+ mArgsInfo.boundingBox_arg = new int[n];
+ mArgsInfo.boundingBox_arg[0] = xminSlider->value();
+ mArgsInfo.boundingBox_arg[1] = xmaxSlider->value();
+ mArgsInfo.boundingBox_arg[2] = yminSlider->value();
+ mArgsInfo.boundingBox_arg[3] = ymaxSlider->value();
+ if (n>3) { // 3D
+ mArgsInfo.boundingBox_arg[4] = zminSlider->value();
+ mArgsInfo.boundingBox_arg[5] = zmaxSlider->value();
+ }
+
+ if (n>6) { // 4D
+ // mArgsInfo.boundingBox_arg[6] = tminSlider->value();
+ // mArgsInfo.boundingBox_arg[7] = tmaxSlider->value();
+ mArgsInfo.boundingBox_arg[6] = 0;
+ mArgsInfo.boundingBox_arg[7] = mCurrentImage->GetSize()[3]-1;
+ }
+
+ // We MUST reset initial extend to input image before using the
+ // filter to retrieve the correct image size
+ for(int i=0; i<mExtentSize; i++) {
+ mReducedExtent[i] = mInitialExtent[i];
+ // DD(mArgsInfo.boundingBox_arg[i]);
+ }
+ UpdateExtent();
+
+ // Main filter
+ CropFilterType::Pointer filter = CropFilterType::New();
+ filter->SetInputVVImage(mCurrentImage);
+ filter->SetArgsInfo(mArgsInfo);
+
+ // Go ! (not threaded)
+ try{
+ filter->Update();
+ }
+ catch(clitk::ExceptionObject & e) {
+ DD(e.what());
+ QApplication::restoreOverrideCursor();
+ close();
+ }
+
+ // Retrieve result and display it
+ vvImage::Pointer output = filter->GetOutputVVImage();
+ std::ostringstream osstream;
+ osstream << "Croped_" << mCurrentSlicerManager->GetSlicer(0)->GetFileName() << ".mhd";
+ AddImage(output,osstream.str());
+
+ // End
+ QApplication::restoreOverrideCursor();
+ close();
+
+ /**
+ // OLD approach with VTK
QApplication::setOverrideCursor(QCursor(Qt::WaitCursor));
vvImage::Pointer mResult=vvImage::New();
vvImage::Pointer image= mCurrentSlicerManager->GetImage();
for (std::vector<vtkImageData*>::const_iterator i=image->GetVTKImages().begin();
- i!=image->GetVTKImages().end();i++)
- {
- vtkSmartPointer<vtkImageClip> filter=vtkSmartPointer<vtkImageClip>::New();
- ///Vtk is very weird, you need to "translate the extent" to get the correct origin
- //http://markmail.org/message/vndc2tr6kcabiakp#query:vtkImageClip%20origin+page:1+mid:6na7y57floutklvz+state:results
- vtkSmartPointer<vtkImageTranslateExtent> translate=vtkSmartPointer<vtkImageTranslateExtent>::New();
- filter->SetInput(*i);
- filter->SetOutputWholeExtent(xminSlider->value(),xmaxSlider->value(),
- yminSlider->value(),ymaxSlider->value(),
- zminSlider->value(),zmaxSlider->value());
- translate->SetTranslation(-xminSlider->value(),-yminSlider->value(),-zminSlider->value());
- translate->SetInput(filter->GetOutput());
- filter->ClipDataOn(); //Really create a cropped copy of the image
- translate->Update();
- vtkImageData* output=vtkImageData::New();
- output->ShallowCopy(translate->GetOutput());
- mResult->AddImage(output);
- }
+ i!=image->GetVTKImages().end(); i++) {
+ vtkSmartPointer<vtkImageClip> filter=vtkSmartPointer<vtkImageClip>::New();
+ ///Vtk is very weird, you need to "translate the extent" to get the correct origin
+ //http://markmail.org/message/vndc2tr6kcabiakp#query:vtkImageClip%20origin+page:1+mid:6na7y57floutklvz+state:results
+ vtkSmartPointer<vtkImageTranslateExtent> translate=vtkSmartPointer<vtkImageTranslateExtent>::New();
+ filter->SetInput(*i);
+ filter->SetOutputWholeExtent(xminSlider->value(),xmaxSlider->value(),
+ yminSlider->value(),ymaxSlider->value(),
+ zminSlider->value(),zmaxSlider->value());
+ translate->SetTranslation(-xminSlider->value(),-yminSlider->value(),-zminSlider->value());
+ translate->SetInput(filter->GetOutput());
+ filter->ClipDataOn(); //Really create a cropped copy of the image
+ translate->Update();
+ vtkImageData* output=vtkImageData::New();
+ output->ShallowCopy(translate->GetOutput());
+ mResult->AddImage(output);
+ }
QApplication::restoreOverrideCursor();
std::ostringstream osstream;
osstream << "Crop_" << mCurrentSlicerManager->GetSlicer(0)->GetFileName() << ".mhd";
- AddImage(mResult, osstream.str());
+ AddImage(mResult, osstream.str());
close();
+
+ **/
}
//------------------------------------------------------------------------------
git://git.creatis.insa-lyon.fr / clitk.git / blobdiff