/*=========================================================================
+ Program: vv http://www.creatis.insa-lyon.fr/rio/vv
- Program: vv
- Module: $RCSfile: vvToolCropImage.cxx,v $
- Language: C++
- Date: $Date: 2010/03/01 07:37:25 $
- Version: $Revision: 1.2 $
- Author : David Sarrut (david.sarrut@creatis.insa-lyon.fr)
+ Authors belong to:
+ - University of LYON http://www.universite-lyon.fr/
+ - Léon Bérard cancer center http://oncora1.lyon.fnclcc.fr
+ - CREATIS CNRS laboratory http://www.creatis.insa-lyon.fr
- Copyright (C) 2008
- Léon Bérard cancer center http://oncora1.lyon.fnclcc.fr
- CREATIS-LRMN http://www.creatis.insa-lyon.fr
+ This software is distributed WITHOUT ANY WARRANTY; without even
+ the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR
+ PURPOSE. See the copyright notices for more information.
- This program is free software: you can redistribute it and/or modify
- it under the terms of the GNU General Public License as published by
- the Free Software Foundation, version 3 of the License.
+ It is distributed under dual licence
- This program is distributed in the hope that it will be useful,
- but WITHOUT ANY WARRANTY; without even the implied warranty of
- MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
- GNU General Public License for more details.
+ - BSD See included LICENSE.txt file
+ - CeCILL-B http://www.cecill.info/licences/Licence_CeCILL-B_V1-en.html
+======================================================================-====*/
- You should have received a copy of the GNU General Public License
- along with this program. If not, see <http://www.gnu.org/licenses/>.
+// vv
+#include "vvToolCropImage.h"
+#include "vvSlicer.h"
- =========================================================================*/
+// clitk
+#include "clitkCropImage_ggo.h"
+#include "clitkCropImageGenericFilter.h"
+#include "clitkExceptionObject.h"
-#include "vvToolCropImage.h"
+// qt
#include <QComboBox>
#include <QCursor>
#include <QApplication>
+#include <QMessageBox>
+
+// vtk
#include <vtkImageClip.h>
#include <vtkImageTranslateExtent.h>
#include <vtkImageData.h>
#include <vtkSmartPointer.h>
-#include "vvSlicer.h"
//------------------------------------------------------------------------------
// Create the tool and automagically (I like this word) insert it in
//------------------------------------------------------------------------------
vvToolCropImage::vvToolCropImage(vvMainWindowBase * parent, Qt::WindowFlags f):
- vvToolWidgetBase(parent, f),
- vvToolBase<vvToolCropImage>(parent),
- Ui::vvToolCropImage() {
+ vvToolWidgetBase(parent, f),
+ vvToolBase<vvToolCropImage>(parent),
+ Ui::vvToolCropImage()
+{
// GUI Initialization
Ui_vvToolCropImage::setupUi(mToolWidget);
- mReducedExtent = new int[6]; // TO CHANGE !! nb dim
+ // mTLabel2->setHidden(false);
+ // tminSlider->setHidden(false);
+ // tmaxSlider->setHidden(false);
+ // spin_tmin->setHidden(false);
+ // spin_tmax->setHidden(false);
+ // mLabelTimeCropping->setHidden(false);
+ mTLabel1->setHidden(true);
+ mTLabel2->setHidden(true);
+ tminSlider->setHidden(true);
+ tmaxSlider->setHidden(true);
+ spin_tmin->setHidden(true);
+ spin_tmax->setHidden(true);
+ mLabelTimeCropping->setHidden(true);
- // Connect
- connect(xminSlider, SIGNAL(sliderMoved(int)), this, SLOT(sliderMoved(int)));
+ // Set how many inputs are needed for this tool
+ AddInputSelector("Select one image");
+}
+//------------------------------------------------------------------------------
+
+
+//------------------------------------------------------------------------------
+vvToolCropImage::~vvToolCropImage()
+{
+
+}
+//------------------------------------------------------------------------------
+
+
+//------------------------------------------------------------------------------
+void vvToolCropImage::closeEvent(QCloseEvent *event)
+{
+ // Reset extends
+ for(int i=0; i<mExtentSize; i++) mReducedExtent[i] = mInitialExtent[i];
+ UpdateExtent();
+ event->accept();
}
//------------------------------------------------------------------------------
//------------------------------------------------------------------------------
-vvToolCropImage::~vvToolCropImage() {
+bool vvToolCropImage::close()
+{
+ return vvToolWidgetBase::close();
+}
+//------------------------------------------------------------------------------
+
+//------------------------------------------------------------------------------
+void vvToolCropImage::reject()
+{
+ for(int i=0; i<mExtentSize; i++) mReducedExtent[i] = mInitialExtent[i];
+ UpdateExtent();
+ return vvToolWidgetBase::reject();
}
//------------------------------------------------------------------------------
//------------------------------------------------------------------------------
-void vvToolCropImage::sliderMoved(int s) {
- DD(s);
+void vvToolCropImage::sliderXMinValueChanged(int s)
+{
+ xmaxSlider->setMinimum(xminSlider->value());
mReducedExtent[0] = xminSlider->value();
- for(int i=0; i<mCurrentSlicerManager->NumberOfSlicers(); i++) {
+ UpdateExtent();
+}
+//------------------------------------------------------------------------------
+
+
+//------------------------------------------------------------------------------
+void vvToolCropImage::sliderXMaxValueChanged(int s)
+{
+ xminSlider->setMaximum(xmaxSlider->value());
+ mReducedExtent[1] = xmaxSlider->value();
+ UpdateExtent();
+}
+//------------------------------------------------------------------------------
+
+
+//------------------------------------------------------------------------------
+void vvToolCropImage::sliderYMinValueChanged(int s)
+{
+ ymaxSlider->setMinimum(yminSlider->value());
+ mReducedExtent[2] = yminSlider->value();
+ UpdateExtent();
+}
+//------------------------------------------------------------------------------
+
+
+//------------------------------------------------------------------------------
+void vvToolCropImage::sliderYMaxValueChanged(int s)
+{
+ yminSlider->setMaximum(ymaxSlider->value());
+ mReducedExtent[3] = ymaxSlider->value();
+ UpdateExtent();
+}
+//------------------------------------------------------------------------------
+
+
+//------------------------------------------------------------------------------
+void vvToolCropImage::sliderZMinValueChanged(int s)
+{
+ zmaxSlider->setMinimum(zminSlider->value());
+ mReducedExtent[4] = zminSlider->value();
+ UpdateExtent();
+}
+//------------------------------------------------------------------------------
+
+
+//------------------------------------------------------------------------------
+void vvToolCropImage::sliderZMaxValueChanged(int s)
+{
+ zminSlider->setMaximum(zmaxSlider->value());
+ mReducedExtent[5] = zmaxSlider->value();
+ UpdateExtent();
+}
+//------------------------------------------------------------------------------
+
+
+//------------------------------------------------------------------------------
+void vvToolCropImage::sliderTMinValueChanged(int s) {
+ tmaxSlider->setMinimum(tminSlider->value());
+ mReducedExtent[6] = tminSlider->value();
+ UpdateExtent();
+}
+//------------------------------------------------------------------------------
+
+
+//------------------------------------------------------------------------------
+void vvToolCropImage::sliderTMaxValueChanged(int s) {
+ tminSlider->setMaximum(tmaxSlider->value());
+ mReducedExtent[7] = tmaxSlider->value();
+ UpdateExtent();
+}
+//------------------------------------------------------------------------------
+
+
+//------------------------------------------------------------------------------
+void vvToolCropImage::UpdateExtent()
+{
+ for(int i=0; i<mCurrentSlicerManager->GetNumberOfSlicers(); i++) {
mCurrentSlicerManager->GetSlicer(i)->SetReducedExtent(mReducedExtent);
+ mCurrentSlicerManager->GetSlicer(i)->ForceUpdateDisplayExtent();
+ mCurrentSlicerManager->GetSlicer(i)->Render();
}
}
//------------------------------------------------------------------------------
//------------------------------------------------------------------------------
-void vvToolCropImage::InputIsSelected(vvSlicerManager * slicer) {
- DD("InputIsSelected");
+void vvToolCropImage::InputIsSelected(vvSlicerManager * slicer)
+{
+ // Change interface according to number of dimension
+ mExtentSize = 2*slicer->GetDimension();
+ if (slicer->GetDimension()<4) {
+ mTLabel1->setHidden(true);
+ mTLabel2->setHidden(true);
+ tminSlider->setHidden(true);
+ tmaxSlider->setHidden(true);
+ spin_tmin->setHidden(true);
+ spin_tmax->setHidden(true);
+ mLabelTimeCropping->setHidden(true);
+ }
+ if (slicer->GetDimension()<3) {
+ mZLabel1->setHidden(true);
+ mZLabel2->setHidden(true);
+ zminSlider->setHidden(true);
+ zmaxSlider->setHidden(true);
+ spin_zmin->setHidden(true);
+ spin_zmax->setHidden(true);
+ }
+
+ // Record initial extend
+ mReducedExtent = new int[mExtentSize];
+ mInitialExtent = new int[mExtentSize];
mReducedExtent = mCurrentSlicerManager->GetImage()->GetFirstVTKImageData()->GetWholeExtent();
- DD(mReducedExtent[0]);
- DD(mReducedExtent[1]);
+ for(int i=0; i<mExtentSize; i++) mInitialExtent[i] = mReducedExtent[i];
+ for(int i=0; i<mCurrentSlicerManager->GetNumberOfSlicers(); i++) {
+ mCurrentSlicerManager->GetSlicer(i)->EnableReducedExtent(true);
+ }
-
- // TODO : set min/max
- std::vector<int> imsize = mCurrentSlicerManager->GetImage()->GetSize();
- xminSlider->setMaximum(imsize[0]-1);
- xmaxSlider->setMaximum(imsize[0]-1);
- xmaxSlider->setValue(imsize[0]-1);
- yminSlider->setMaximum(imsize[1]-1);
- ymaxSlider->setMaximum(imsize[1]-1);
- ymaxSlider->setValue(imsize[1]-1);
+ // Set initial sliders values
+ std::vector<int> imsize = mCurrentSlicerManager->GetImage()->GetSize();
+ xminSlider->setMaximum(imsize[0]-1);
+ xmaxSlider->setMaximum(imsize[0]-1);
+ xmaxSlider->setValue(imsize[0]-1);
+
+ yminSlider->setMaximum(imsize[1]-1);
+ ymaxSlider->setMaximum(imsize[1]-1);
+ ymaxSlider->setValue(imsize[1]-1);
+
+ if (slicer->GetDimension() >2) {
zminSlider->setMaximum(imsize[2]-1);
zmaxSlider->setMaximum(imsize[2]-1);
zmaxSlider->setValue(imsize[2]-1);
- spin_xmin->setMaximum(imsize[0]-1);
- spin_xmax->setMaximum(imsize[0]-1);
- spin_xmax->setValue(imsize[0]-1);
- spin_ymin->setMaximum(imsize[1]-1);
- spin_ymax->setMaximum(imsize[1]-1);
- spin_ymax->setValue(imsize[1]-1);
+ }
+
+ if (slicer->GetDimension() >3) {
+ tminSlider->setMaximum(imsize[3]-1);
+ tmaxSlider->setMaximum(imsize[3]-1);
+ tmaxSlider->setValue(imsize[3]-1);
+ }
+
+ spin_xmin->setMaximum(imsize[0]-1);
+ spin_xmax->setMaximum(imsize[0]-1);
+ spin_xmax->setValue(imsize[0]-1);
+
+ spin_ymin->setMaximum(imsize[1]-1);
+ spin_ymax->setMaximum(imsize[1]-1);
+ spin_ymax->setValue(imsize[1]-1);
+
+ if (slicer->GetDimension() >2) {
spin_zmin->setMaximum(imsize[2]-1);
spin_zmax->setMaximum(imsize[2]-1);
spin_zmax->setValue(imsize[2]-1);
+ }
+
+ if (slicer->GetDimension() >3) {
+ spin_tmin->setMaximum(imsize[3]-1);
+ spin_tmax->setMaximum(imsize[3]-1);
+ spin_tmax->setValue(imsize[3]-1);
+ }
+
+ // Connect
+ connect(xminSlider, SIGNAL(valueChanged(int)), this, SLOT(sliderXMinValueChanged(int)));
+ connect(xmaxSlider, SIGNAL(valueChanged(int)), this, SLOT(sliderXMaxValueChanged(int)));
+ connect(yminSlider, SIGNAL(valueChanged(int)), this, SLOT(sliderYMinValueChanged(int)));
+ connect(ymaxSlider, SIGNAL(valueChanged(int)), this, SLOT(sliderYMaxValueChanged(int)));
+ connect(zminSlider, SIGNAL(valueChanged(int)), this, SLOT(sliderZMinValueChanged(int)));
+ connect(zmaxSlider, SIGNAL(valueChanged(int)), this, SLOT(sliderZMaxValueChanged(int)));
+ connect(tminSlider, SIGNAL(valueChanged(int)), this, SLOT(sliderTMinValueChanged(int)));
+ connect(tmaxSlider, SIGNAL(valueChanged(int)), this, SLOT(sliderTMaxValueChanged(int)));
+
+ // connect(mCurrentSlicerManager,SIGNAL(UpdateSlice(int,int)),this,SLOT(UpdateExtent()));
+ //connect(mCurrentSlicerManager,SIGNAL(UpdateTSlice(int,int)),this,SLOT(UpdateExtent()));
+
+ // connect(mIntensitySlider, SIGNAL(valueChanged(double)), this, SLOT(autoCropValueChanged(double)));
+ UpdateExtent();
}
//------------------------------------------------------------------------------
//------------------------------------------------------------------------------
-void vvToolCropImage::apply() {
- DD("apply");
-
- QApplication::setOverrideCursor(QCursor(Qt::WaitCursor));
- vvImage::Pointer mResult=vvImage::New();
- //vvSlicerManager * current=mSlicerManagers[inputSequenceBox->currentIndex()];
- vvImage::Pointer image= mCurrentSlicerManager->GetImage();
- for (std::vector<vtkImageData*>::const_iterator i=image->GetVTKImages().begin();
- i!=image->GetVTKImages().end();i++)
- {
- vtkSmartPointer<vtkImageClip> filter=vtkSmartPointer<vtkImageClip>::New();
- ///Vtk is very weird, you need to "translate the extent" to get the correct origin
- //http://markmail.org/message/vndc2tr6kcabiakp#query:vtkImageClip%20origin+page:1+mid:6na7y57floutklvz+state:results
- vtkSmartPointer<vtkImageTranslateExtent> translate=vtkSmartPointer<vtkImageTranslateExtent>::New();
- filter->SetInput(*i);
- filter->SetOutputWholeExtent(xminSlider->value(),xmaxSlider->value(),
- yminSlider->value(),ymaxSlider->value(),
- zminSlider->value(),zmaxSlider->value());
- translate->SetTranslation(-xminSlider->value(),-yminSlider->value(),-zminSlider->value());
- translate->SetInput(filter->GetOutput());
- filter->ClipDataOn(); //Really create a cropped copy of the image
- translate->Update();
- vtkImageData* output=vtkImageData::New();
- output->ShallowCopy(translate->GetOutput());
- mResult->AddImage(output);
- }
+void vvToolCropImage::autoCropValueChanged(double v)
+{
+ //TODO
+}
+//------------------------------------------------------------------------------
+
+
+//------------------------------------------------------------------------------
+void vvToolCropImage::apply()
+{
+ if (!mCurrentSlicerManager) close();
+ QApplication::setOverrideCursor(QCursor(Qt::WaitCursor));
+
+ // Typedef
+ typedef args_info_clitkCropImage ArgsInfoType;
+ typedef clitk::CropImageGenericFilter CropFilterType;
+
+ // Get options
+ ArgsInfoType mArgsInfo;
+ cmdline_parser_clitkCropImage_init(&mArgsInfo); // Initialisation to default
+ int n = mCurrentSlicerManager->GetDimension()*2; // 2D and 3D only
+ mArgsInfo.boundingBox_given = n;
+ mArgsInfo.boundingBox_arg = new int[n];
+ mArgsInfo.boundingBox_arg[0] = xminSlider->value();
+ mArgsInfo.boundingBox_arg[1] = xmaxSlider->value();
+ mArgsInfo.boundingBox_arg[2] = yminSlider->value();
+ mArgsInfo.boundingBox_arg[3] = ymaxSlider->value();
+ if (n>3) { // 3D
+ mArgsInfo.boundingBox_arg[4] = zminSlider->value();
+ mArgsInfo.boundingBox_arg[5] = zmaxSlider->value();
+ }
+
+ if (n>6) { // 4D
+ // mArgsInfo.boundingBox_arg[6] = tminSlider->value();
+ // mArgsInfo.boundingBox_arg[7] = tmaxSlider->value();
+ mArgsInfo.boundingBox_arg[6] = 0;
+ mArgsInfo.boundingBox_arg[7] = mCurrentImage->GetSize()[3]-1;
+ }
+
+ // We MUST reset initial extend to input image before using the
+ // filter to retrieve the correct image size
+ for(int i=0; i<mExtentSize; i++) {
+ mReducedExtent[i] = mInitialExtent[i];
+ // DD(mArgsInfo.boundingBox_arg[i]);
+ }
+ UpdateExtent();
+
+ // Main filter
+ CropFilterType::Pointer filter = CropFilterType::New();
+ filter->SetInputVVImage(mCurrentImage);
+ filter->SetArgsInfo(mArgsInfo);
+
+ // Go ! (not threaded)
+ try{
+ filter->Update();
+ }
+ catch(clitk::ExceptionObject & e) {
+ DD(e.what());
QApplication::restoreOverrideCursor();
+ close();
+ }
+
+ // Retrieve result and display it
+ vvImage::Pointer output = filter->GetOutputVVImage();
+ std::ostringstream osstream;
+ osstream << "Croped_" << mCurrentSlicerManager->GetSlicer(0)->GetFileName() << ".mhd";
+ AddImage(output,osstream.str());
+
+ // End
+ QApplication::restoreOverrideCursor();
+ close();
- AddImage(mResult,"crop.mhd");
+ /**
+ // OLD approach with VTK
+ QApplication::setOverrideCursor(QCursor(Qt::WaitCursor));
+ vvImage::Pointer mResult=vvImage::New();
+ vvImage::Pointer image= mCurrentSlicerManager->GetImage();
+ for (std::vector<vtkImageData*>::const_iterator i=image->GetVTKImages().begin();
+ i!=image->GetVTKImages().end(); i++) {
+ vtkSmartPointer<vtkImageClip> filter=vtkSmartPointer<vtkImageClip>::New();
+ ///Vtk is very weird, you need to "translate the extent" to get the correct origin
+ //http://markmail.org/message/vndc2tr6kcabiakp#query:vtkImageClip%20origin+page:1+mid:6na7y57floutklvz+state:results
+ vtkSmartPointer<vtkImageTranslateExtent> translate=vtkSmartPointer<vtkImageTranslateExtent>::New();
+ filter->SetInput(*i);
+ filter->SetOutputWholeExtent(xminSlider->value(),xmaxSlider->value(),
+ yminSlider->value(),ymaxSlider->value(),
+ zminSlider->value(),zmaxSlider->value());
+ translate->SetTranslation(-xminSlider->value(),-yminSlider->value(),-zminSlider->value());
+ translate->SetInput(filter->GetOutput());
+ filter->ClipDataOn(); //Really create a cropped copy of the image
+ translate->Update();
+ vtkImageData* output=vtkImageData::New();
+ output->ShallowCopy(translate->GetOutput());
+ mResult->AddImage(output);
+ }
+ QApplication::restoreOverrideCursor();
+ std::ostringstream osstream;
+ osstream << "Crop_" << mCurrentSlicerManager->GetSlicer(0)->GetFileName() << ".mhd";
+ AddImage(mResult, osstream.str());
close();
+
+ **/
}
//------------------------------------------------------------------------------
git://git.creatis.insa-lyon.fr / clitk.git / blobdiff