Authors belong to:
- University of LYON http://www.universite-lyon.fr/
- - Léon Bérard cancer center http://oncora1.lyon.fnclcc.fr
+ - Léon Bérard cancer center http://www.centreleonberard.fr
- CREATIS CNRS laboratory http://www.creatis.insa-lyon.fr
This software is distributed WITHOUT ANY WARRANTY; without even
- BSD See included LICENSE.txt file
- CeCILL-B http://www.cecill.info/licences/Licence_CeCILL-B_V1-en.html
- ======================================================================-====*/
+ ===========================================================================**/
// vv
#include "vvToolExtractLung.h"
// GUI
Ui_vvToolExtractLung::setupUi(mToolWidget);
mMaskLoaderBox->setEnabled(false);
- //mOptionsBox->setEnabled(false);
+ mOptionsBox->setEnabled(false);
mPatientMaskInputWidget->SetText("Patient mask");
connect(mPatientMaskInputWidget, SIGNAL(accepted()), this, SLOT(PatientMaskInputIsSelected()));
// Default values
mArgsInfo = new ArgsInfoType;
cmdline_parser_clitkExtractLung_init(mArgsInfo);
+ SetGUIFromArgsInfo();
m_IsThreadInterrupted = false;
// Create a new ExtractLung filter
SetToolMenuName("Extract lungs");
SetToolIconFilename(":/common/icons/lung-overlay.png");
SetToolTip("Extract lung mask from thorax CT.");
- // SetToolExperimental(true);
+ SetToolExperimental(true);
// SetToolInMenu("Segmentation");
}
//------------------------------------------------------------------------------
}
mMaskLoaderBox->setEnabled(false);
- //mOptionsBox->setEnabled(true);
+ mOptionsBox->setEnabled(true);
+}
+//------------------------------------------------------------------------------
+
+
+//------------------------------------------------------------------------------
+void vvToolExtractLung::SetGUIFromArgsInfo()
+{
+ mAirUpperThresholdSlider->SetText("Upper threshold for air");
+ mAirUpperThresholdSlider->SetMinimum(-1200);
+ mAirUpperThresholdSlider->SetMaximum(2000);
+ DD(mArgsInfo->upper_arg);
+ mAirUpperThresholdSlider->SetValue(mArgsInfo->upper_arg);
+
+ mAirLowerThresholdSlider->SetText("Lower threshold for air");
+ mAirLowerThresholdSlider->SetMinimum(-1200);
+ mAirLowerThresholdSlider->SetMaximum(2000);
+ mAirLowerThresholdSlider->SetValue(mArgsInfo->lower_arg);
+
}
//------------------------------------------------------------------------------
//------------------------------------------------------------------------------
void vvToolExtractLung::GetArgsInfoFromGUI()
{
- mArgsInfo->patientBG_arg = 0; //mPatientBackgroundValueSpinBox->value();
- mArgsInfo->verboseOption_flag = false;
- mArgsInfo->verboseStep_flag = false;
+ // mArgsInfo->patientBG_arg = mPatientMaskInputWidget->GetBackgroundValue();
+ mArgsInfo->verboseOption_flag = true; // DEBUG. TO CHANGE
+ mArgsInfo->verboseStep_flag = true; // DEBUG. TO CHANGE
mArgsInfo->writeStep_flag = false;
mArgsInfo->input_given = 0;
- mArgsInfo->patient_given = 0;
+ // mArgsInfo->patient_given = 0;
mArgsInfo->output_given = 0;
mArgsInfo->outputTrachea_given = 0;
- mArgsInfo->remove1_given = 0;
+ // mArgsInfo->remove1_given = 0;
+
+ mArgsInfo->upper_arg = mAirUpperThresholdSlider->GetValue();
+ mArgsInfo->lower_arg = mAirLowerThresholdSlider->GetValue();
+ if (mRadioButtonLowerThan->isChecked()) mArgsInfo->lower_given = 1;
}
//------------------------------------------------------------------------------
// Read options from GUI and put it in the ArgsInfo struct
GetArgsInfoFromGUI();
+
+ // Check options
+ if (mArgsInfo->lower_given) {
+ if (mArgsInfo->lower_arg > mArgsInfo->upper_arg) {
+ QApplication::restoreOverrideCursor();
+ QMessageBox::information(this,tr("Error"), "Lower threshold cannot be greater than upper threshold.");
+ return;
+ }
+ }
// Create new filter
if (mFilter) delete mFilter;
mFilter = new FilterType; // needed when thread cancel the filter
- mFilter->StopOnErrorOff();
+ // mFilter->StopOnErrorOff();
// mFilter->SetIOVerbose(true);
mFilter->AddInputVVImage(mCurrentImage); // CT
mFilter->AddInputVVImage(mPatient); // patient mask
vvThreadedFilter thread;
connect(&thread, SIGNAL(ThreadInterrupted()), this, SLOT(ThreadInterrupted()));
thread.SetFilter(mFilter);
- thread.Update();
+ try {
+ thread.Update();
+ }
+ catch(std::runtime_error e) {
+ DD("Error exception handling");
+ DD(m_IsThreadInterrupted);
// Check if the thread has been canceled. In this case, return
if (m_IsThreadInterrupted) {
m_IsThreadInterrupted = false;
disconnect(&thread, SIGNAL(ThreadInterrupted()), this, SLOT(ThreadInterrupted()));
// Check error during filter
- if (mFilter->HasError()) {
+ // if (mFilter->HasError()) {
QApplication::restoreOverrideCursor();
- QMessageBox::information(this,tr("Error"), mFilter->GetLastError().c_str());
+ QMessageBox::information(this,tr("Error"), e.what());//mFilter->GetLastError().c_str());
return;
- }
+ // }
+ } // end exception
// Get output
std::vector<vvImage::Pointer> output = mFilter->GetOutputVVImages();