- BSD See included LICENSE.txt file
- CeCILL-B http://www.cecill.info/licences/Licence_CeCILL-B_V1-en.html
======================================================================-====*/
+
+// vv
#include "vvToolRigidReg.h"
-#include <QComboBox>
-#include <QCursor>
-#include <QApplication>
+#include "vvImageReader.h"
+#include "vvSlicer.h"
+
+// vtk
#include <vtkImageData.h>
#include <vtkSmartPointer.h>
#include <vtkTransform.h>
-#include "vvImage.h"
-#include "vvSlicer.h"
-#include <QString>
+
+// clitk
+#include "clitkTransformUtilities.h"
+#include "clitkAffineRegistrationGenericFilter.h"
+// qt
#include <QMessageBox>
-#include <vvMainWindow.h>
+#include <QFileDialog>
+#include <QTextStream>
+#include <QComboBox>
+#include <QCursor>
+
//------------------------------------------------------------------------------
// Create the tool and automagically (I like this word) insert it in
// the main window menu.
ADD_TOOL(vvToolRigidReg);
//------------------------------------------------------------------------------
-
//------------------------------------------------------------------------------
vvToolRigidReg::vvToolRigidReg(vvMainWindowBase * parent, Qt::WindowFlags f):
vvToolWidgetBase(parent, f),
{
// GUI Initialization
Ui_vvToolRigidReg::setupUi(mToolWidget);
+ // QSize qsize;
+// qsize.setHeight(470);
+// qsize.setWidth(850);
+// mToolWidget->setFixedSize(qsize);
+
// Set how many inputs are needed for this tool
- AddInputSelector("Select the Reference Image");
- AddInputSelector("Select the Target Image");
+ // mFilter = new clitk::AffineTransformGenericFilter<args_info_clitkAffineTransform>;
+ mFilter = new clitk::AffineRegistrationGenericFilter<args_info_clitkAffineRegistration>;
+
+ // Set how many inputs are needed for this tool
+ AddInputSelector("Select moving image",mFilter);
+ AddInputSelector("Select fixed image",mFilter);
}
//------------------------------------------------------------------------------
-
//------------------------------------------------------------------------------
vvToolRigidReg::~vvToolRigidReg()
{
}
//------------------------------------------------------------------------------
-
//------------------------------------------------------------------------------
bool vvToolRigidReg::close()
{
+ ResetTransform();
+ RemoveOverlay();
return vvToolWidgetBase::close();
}
//------------------------------------------------------------------------------
-
//------------------------------------------------------------------------------
void vvToolRigidReg::reject()
{
+
return vvToolWidgetBase::reject();
}
//------------------------------------------------------------------------------
+//------------------------------------------------------------------------------
+void vvToolRigidReg::GetArgsInfoFromGUI()
+{
+ QString str;
+ str.append("Configs Loaded for AutoRegister...Apply Filter...");
+ tab2textedit->setText(str);
+ /* cmdline_parser_clitkAffineRegistration_configfile("/home/bharath/bin/AffineReg.txt",&mArgsInfo,1,1,0);
+ mArgsInfo.reference_arg=new char;
+ mArgsInfo.target_arg=new char;
+ mArgsInfo.output_arg=new char;
+ mArgsInfo.referenceMask_arg=new char;
+ mArgsInfo.targetMask_arg=new char;
+ mArgsInfo.initMatrix_arg=new char;
+ mArgsInfo.matrix_arg=new char;*/
+ mArgsInfo.referenceMask_given=0;
+ mArgsInfo.reference_given=0;
+ mArgsInfo.reference_arg=new char;
+ mArgsInfo.target_given=0;
+ mArgsInfo.target_arg=new char;
+ mArgsInfo.output_given=0;
+ mArgsInfo.output_arg=new char;
+ mArgsInfo.checker_after_given=0;
+ mArgsInfo.checker_before_given=0;
+ mArgsInfo.after_given=0;
+ mArgsInfo.before_given=0;
+ // std::string strouput= "/home/bharath/bin/Lung3Doutput.mhd";
+ //mArgsInfo.output_arg=const_cast<char*>(strouput.c_str());
+ mArgsInfo.threads_given=1;
+ mArgsInfo.threads_arg=3;
+ mArgsInfo.normalize_flag=0;
+ DD("GetArgsInfoFromGUI_2");
+ mArgsInfo.blur_arg=0.0;
+ mArgsInfo.referenceMask_arg=new char;
+ mArgsInfo.targetMask_arg=new char;
+ mArgsInfo.targetMask_given=0;
+ mArgsInfo.levels_given=1;
+ mArgsInfo.levels_arg=2;
+ mArgsInfo.moment_flag=1;
+ mArgsInfo.intThreshold_given=0;
+ mArgsInfo.intThreshold_arg=0.0;
+ mArgsInfo.transX_arg=0.0;
+ mArgsInfo.transY_arg=0.0;
+ mArgsInfo.transZ_arg=0.0;
+ mArgsInfo.transform_arg=2;
+ mArgsInfo.gradient_flag=1;
+ mArgsInfo.interp_given=1;
+ mArgsInfo.interp_arg=1;
+ mArgsInfo.interpOrder_given=1;
+ mArgsInfo.interpOrder_arg=3;
+ mArgsInfo.interpSF_given=1;
+ mArgsInfo.interpSF_arg=20;//default
+ mArgsInfo.metric_given=1;
+ mArgsInfo.metric_arg=0;
+ mArgsInfo.samples_arg=1;//default
+ mArgsInfo.stdDev_arg=0.4;
+ mArgsInfo.step_arg=2.0;
+ mArgsInfo.relax_arg=0.7;
+ mArgsInfo.valueTol_arg=0.01;
+ mArgsInfo.stepTol_arg=0.1;
+ mArgsInfo.gradTol_arg=1e-5;
+ mArgsInfo.lineAcc_arg=0.9;
+ mArgsInfo.convFactor_arg=1e+12;
+ mArgsInfo.maxIt_arg=500;
+ mArgsInfo.maxLineIt_arg=50;
+ mArgsInfo.maxEval_arg=500;
+ mArgsInfo.maxCorr_arg=5;
+ mArgsInfo.selectBound_arg=0;
+ mArgsInfo.inc_arg=1.2;
+ mArgsInfo.dec_arg=4;
+ mArgsInfo.optimizer_arg=1;
+ mArgsInfo.initMatrix_given=0;
+ mArgsInfo.initMatrix_arg=new char;
+ mArgsInfo.tWeight_given=1;
+ mArgsInfo.tWeight_arg=1.0;
+ mArgsInfo.rWeight_given=1.0;
+ mArgsInfo.rWeight_arg=50.0;
+ // std::string str="/home/bharath/bin/matrix.txt";
+ // mArgsInfo.initMatrix_arg=const_cast<char*>(str.c_str());
+ mArgsInfo.matrix_given=0;
+}
+//------------------------------------------------------------------------------
//------------------------------------------------------------------------------
void vvToolRigidReg::InputIsSelected(std::vector<vvSlicerManager *> & l)
//inputs
mInput1 = l[0];
mInput2 = l[1];
- mTwoInputs = true;
+ UpdateTextEditor(mCurrentSlicerManager->GetImage()->GetTransform()->GetMatrix(),textEdit_2);
- SetOverlay();
- for (int j = 1; j <= 4; j++) {
- mCurrentSlicerManager->GetSlicer(j-1)->SetActorVisibility("overlay",0,true);
+ for(int i =0;i<4;i++)
+ for(int j=0;j<4;j++)
+ mInitialMatrix[i*4+j]=mCurrentSlicerManager->GetImage()->GetTransform()->GetMatrix()->GetElement(i,j);
+
+ if(mInput1->GetFileName()==mInput2->GetFileName())
+ {
+ QMessageBox::information(this, "Warning","Your Reference and Target Images are the same");
}
- mCurrentSlicerManager->Render();
-
- std::vector<int> imagesize;
- imagesize=mCurrentSlicerManager->GetImage()->GetSize();
- std::vector<double> imageorigin;
- imageorigin=mCurrentSlicerManager->GetImage()->GetOrigin();
- QString xcord,ycord,zcord;
-
- //default image rotation center is the center of the image
- xcord=xcord.setNum(imageorigin[0]+imagesize[0]*mCurrentSlicerManager->GetImage()->GetSpacing()[0]/2, 'g', 3);
- ycord=ycord.setNum(imageorigin[1]+imagesize[1]*mCurrentSlicerManager->GetImage()->GetSpacing()[1]/2, 'g', 3);
- zcord=zcord.setNum(imageorigin[2]+imagesize[2]*mCurrentSlicerManager->GetImage()->GetSpacing()[2]/2, 'g', 3);
-
- Xval->setText(xcord);
- Yval->setText(ycord);
- Zval->setText(zcord);
-
- xtrans_slider->setMaximum(2*mCurrentSlicerManager->GetImage()->GetSize()[0]);
- xtrans_slider->setMinimum(-2*mCurrentSlicerManager->GetImage()->GetSize()[0]);
- ytrans_slider->setMaximum(2*mCurrentSlicerManager->GetImage()->GetSize()[1]);
- ytrans_slider->setMinimum(-2*mCurrentSlicerManager->GetImage()->GetSize()[1]);
- ztrans_slider->setMaximum(2*mCurrentSlicerManager->GetImage()->GetSize()[2]);
- ztrans_slider->setMinimum(-2*mCurrentSlicerManager->GetImage()->GetSize()[2]);
-
-
- xtrans_sb->setMaximum(2*mCurrentSlicerManager->GetImage()->GetSize()[0]);
- xtrans_sb->setMinimum(-2*mCurrentSlicerManager->GetImage()->GetSize()[0]);
- ytrans_sb->setMaximum(2*mCurrentSlicerManager->GetImage()->GetSize()[1]);
- ytrans_sb->setMinimum(-2*mCurrentSlicerManager->GetImage()->GetSize()[1]);
- ztrans_sb->setMaximum(2*mCurrentSlicerManager->GetImage()->GetSize()[2]);
- ztrans_sb->setMinimum(-2*mCurrentSlicerManager->GetImage()->GetSize()[2]);
-
- xrot_slider->setMaximum(360);
- xrot_slider->setMinimum(-360);
- yrot_slider->setMaximum(360);
- yrot_slider->setMinimum(-360);
- zrot_slider->setMaximum(360);
- zrot_slider->setMinimum(-360);
-
-
- xrot_sb->setMaximum(360);
- xrot_sb->setMinimum(-360);
- yrot_sb->setMaximum(360);
- yrot_sb->setMinimum(-360);
- zrot_sb->setMaximum(360);
- zrot_sb->setMinimum(-360);
-
- //connect all sigs to slots
- connect(Xval, SIGNAL(editingFinished()), this, SLOT(SetXvalue()));
- connect(Yval, SIGNAL(editingFinished()), this, SLOT(SetYvalue()));
- connect(Zval, SIGNAL(editingFinished()), this, SLOT(SetZvalue()));
- connect(xtrans_slider, SIGNAL(valueChanged(int)), this, SLOT(UpdateXtranslider()));
- connect(ytrans_slider, SIGNAL(valueChanged(int)), this, SLOT(UpdateYtranslider()));
- connect(ztrans_slider, SIGNAL(valueChanged(int)), this, SLOT(UpdateZtranslider()));
- connect(xrot_slider, SIGNAL(valueChanged(int)), this, SLOT(UpdateXrotslider()));
- connect(yrot_slider, SIGNAL(valueChanged(int)), this, SLOT(UpdateYrotslider()));
- connect(zrot_slider, SIGNAL(valueChanged(int)), this, SLOT(UpdateZrotslider()));
+ mTwoInputs = true;
+ SetOverlay();
+ mImageSize=mInput1->GetImage()->GetSize();
+ SetRotationCenter();
+ SetSliderRanges();
+
+ //connect all sigs to slots
+ connect(resetbutton, SIGNAL(pressed()), this, SLOT(ResetTransform()));
+ connect(tab2loadbutton, SIGNAL(pressed()), this, SLOT(GetArgsInfoFromGUI()));
+ connect(tab2applybutton, SIGNAL(pressed()), this, SLOT(AutoRegister()));
+
+
+ connect(Xval, SIGNAL(editingFinished()), this, SLOT(SetXvalue()));
+ connect(Yval, SIGNAL(editingFinished()), this, SLOT(SetYvalue()));
+ connect(Zval, SIGNAL(editingFinished()), this, SLOT(SetZvalue()));
+
+ connect(xtrans_slider, SIGNAL(valueChanged(int)), this, SLOT(UpdateTransform_sliders()));
+ connect(ytrans_slider, SIGNAL(valueChanged(int)), this, SLOT(UpdateTransform_sliders()));
+ connect(ztrans_slider, SIGNAL(valueChanged(int)), this, SLOT(UpdateTransform_sliders()));
+
+
+ connect(xrot_slider, SIGNAL(valueChanged(int)), this, SLOT(UpdateTransform_sliders()));
+ connect(yrot_slider, SIGNAL(valueChanged(int)), this, SLOT(UpdateTransform_sliders()));
+ connect(zrot_slider, SIGNAL(valueChanged(int)), this, SLOT(UpdateTransform_sliders()));
+
+ connect(xtrans_sb, SIGNAL(valueChanged(double)), this, SLOT(UpdateTransform_sb()));
+ connect(ytrans_sb, SIGNAL(valueChanged(double)), this, SLOT(UpdateTransform_sb()));
+ connect(ztrans_sb, SIGNAL(valueChanged(double)), this, SLOT(UpdateTransform_sb()));
+ connect(xrot_sb, SIGNAL(valueChanged(double)), this, SLOT(UpdateTransform_sb()));
+ connect(yrot_sb, SIGNAL(valueChanged(double)), this, SLOT(UpdateTransform_sb()));
+ connect(zrot_sb, SIGNAL(valueChanged(double)), this, SLOT(UpdateTransform_sb()));
+
+ connect(loadbutton, SIGNAL(pressed()), this, SLOT(ReadFile()));
+ connect(savebutton, SIGNAL(pressed()), this, SLOT(SaveFile()));
+
}
//------------------------------------------------------------------------------
//------------------------------------------------------------------------------
void vvToolRigidReg::apply()
{
-
+ RemoveOverlay();
}
//------------------------------------------------------------------------------
//------------------------------------------------------------------------------
void vvToolRigidReg::SetOverlay()
{
- for (int i =0; i<mCurrentSlicerManager->NumberOfSlicers(); i++) {
- mCurrentSlicerManager->GetSlicer(i)->SetOverlay(mInput2->GetImage());
+ for (int i =0; i<mCurrentSlicerManager->NumberOfSlicers(); i++) {
+ mCurrentSlicerManager->GetSlicer(i)->SetOverlay(mInput2->GetImage());
+ mCurrentSlicerManager->GetSlicer(i)->SetActorVisibility("overlay",0,true);
+ mCurrentSlicerManager->SetColorMap();
+ mCurrentSlicerManager->Render();
+ }
}
+//------------------------------------------------------------------------------
+
+//------------------------------------------------------------------------------
+void vvToolRigidReg::RemoveOverlay()
+{
+ for(int i=0;i<mCurrentSlicerManager->NumberOfSlicers();i++)
+ {
+ mInput1->RemoveActor("overlay",0);
+ mInput1->SetColorMap(0);
+ mInput1->Render();
+ hide();
+ }
}
//------------------------------------------------------------------------------
//------------------------------------------------------------------------------
//------------------------------------------------------------------------------
-void vvToolRigidReg::SetTransform(double tX, double tY, double tZ, double aX, double aY, double aZ)
+void vvToolRigidReg::SetTransform(double tX, double tY, double tZ, double aX, double aY, double aZ,bool update)
{
-
- vtkSmartPointer<vtkTransform> transform = mCurrentSlicerManager->GetImage()->GetTransform();
+ vtkSmartPointer<vtkTransform> transform = mInput1->GetImage()->GetTransform();
transform->PostMultiply();
-
//Rotations
if (aX!=0 || aY!=0 || aZ!=0) {
double x, y ,z;
if (aZ!=0) transform->RotateZ(aZ);
transform->Translate(x,y,z);
}
-
//Translations
- if (tX!=0 || tY!=0 || tZ!=0)
- transform->Translate(tX,tY,tZ);
+ if (tX!=0||tY!=0||tZ!=0)
+ transform->Translate(tX*mInput1->GetImage()->GetSpacing()[0],tY*mInput1->GetImage()->GetSpacing()[1],tZ*mInput1->GetImage()->GetSpacing()[2]);
+}
+//------------------------------------------------------------------------------
+
+//------------------------------------------------------------------------------
+void vvToolRigidReg::SetTransform(vtkMatrix4x4 *matrix)
+{
+ vtkSmartPointer<vtkTransform> transform=vtkSmartPointer<vtkTransform>::New();
+ for(int i=0; i<4;i++)
+ for(int j=0;j<4;j++)
+ mCurrentSlicerManager->GetImage()->GetTransform()->GetMatrix()->SetElement(i,j,matrix->GetElement(i,j));
+
+ Render();
+}
+//------------------------------------------------------------------------------
+
+//------------------------------------------------------------------------------
+void vvToolRigidReg::Render()
+{
+ for (int i=0; i<mCurrentSlicerManager->NumberOfSlicers(); i++) {
+ mCurrentSlicerManager->GetSlicer(i)->ForceUpdateDisplayExtent();
+ mCurrentSlicerManager->GetSlicer(i)->Render();
+ }
+}
+//------------------------------------------------------------------------------
- transform->Update();
+//------------------------------------------------------------------------------
+ void vvToolRigidReg::UpdateTextEditor(vtkMatrix4x4 *matrix,QTextEdit* textEdit)
+{
+ QFont font=QFont("Times New Roman",11);
+ textEdit->setCurrentFont(font);
+ textEdit->update();
+
+ QString str1,str2,str3;
+ QColor color;
+ textEdit->clear();
+ textEdit->setAcceptRichText(true);
+ str2=textEdit->toPlainText();
+ str2.append("#Rotation Center(mm): \n#");
+ textEdit->setText(str2);
+
+ str2=textEdit->toPlainText();
+ textEdit->setTextColor(QColor(255,0,0));
+ str2.append(str3.append(Xval->text()));
+ textEdit->setText(str2);
+ str3.clear();
+
+ str2=textEdit->toPlainText();
+ str2.append("\t");
+ textEdit->setText(str2);
+
+ str2=textEdit->toPlainText();
+ str2.append(str3.append(Yval->text()));
+ textEdit->setText(str2);
+ str3.clear();
+
+ str2=textEdit->toPlainText();
+ str2.append("\t");
+ textEdit->setText(str2);
+
+
+ str2=textEdit->toPlainText();
+ str2.append(str3.append(Zval->text()));
+ textEdit->setText(str2);
+
+
+ str2=textEdit->toPlainText();
+ str2.append("\n");
+ textEdit->setText(str2);
+
+
+ str2=textEdit->toPlainText();
+ str2.append("#Transformation Matrix(mm):\n");
+ textEdit->setText(str2);
+ for(int i=0;i<4;i++)
+ {
+ for(int j=0;j<4;j++)
+ {
+ str2=textEdit->toPlainText();
+ // str2.append("\t"+str1.setNum(matrix->Element[i][j]));
+ str2.append(QString("%1\t").arg(str1.setNum(matrix->Element[i][j]),2));
+ textEdit->setText(str2);
+ }
+ str2=textEdit->toPlainText();
+ str2.append("\n");
+ textEdit->setText(str2);
+ }
+ //QString str = QFileDialog::getOpenFileName();
+ textEdit->setTextColor(QColor(255,0,0));
+ textEdit->setFont(QFont("courrier new",12,4,true));
+ textEdit->toPlainText().toAscii();
+
+ str2=textEdit->toPlainText();
+ textEdit->setText(str2);
+}
+//------------------------------------------------------------------------------
- for (int i=0; i<mCurrentSlicerManager->NumberOfSlicers(); i++) {
- mCurrentSlicerManager->GetImage()->UpdateReslice();
- mCurrentSlicerManager->GetSlicer(i)->Render();
- }
+//------------------------------------------------------------------------------
+void vvToolRigidReg::UpdateTransform_sliders()
+{
+ InitializeSliders(xtrans_slider->value()*mInput1->GetImage()->GetSpacing()[0],
+ ytrans_slider->value()*mInput1->GetImage()->GetSpacing()[1],
+ ztrans_slider->value()*mInput1->GetImage()->GetSpacing()[2],
+ xrot_slider->value(),yrot_slider->value(),zrot_slider->value(),false);
+ UpdateTransform(true);
+ // Render();
+}
+//------------------------------------------------------------------------------
+
+//------------------------------------------------------------------------------
+void vvToolRigidReg::UpdateTransform_sb()
+{
+ InitializeSliders(xtrans_sb->value(),
+ ytrans_sb->value(),
+ ztrans_sb->value(),
+ xrot_sb->value(),yrot_sb->value(),zrot_sb->value(),false);
+ DD(xtrans_sb->value());
+ UpdateTransform(false);
+ // Render();
+}
+//------------------------------------------------------------------------------
+
+//------------------------------------------------------------------------------
+void vvToolRigidReg::AutoRegister()
+{
+ if (!mCurrentSlicerManager) close();
+ QApplication::setOverrideCursor(QCursor(Qt::WaitCursor));
+
+ std::vector<vvImage::Pointer> inputs;
+ // Input
+ inputs.push_back(mInput1->GetImage());
+ inputs.push_back(mInput2->GetImage());
+ // Check input type
+ // Main filter
+ clitk::AffineRegistrationGenericFilter<args_info_clitkAffineRegistration>::Pointer filter =
+ clitk::AffineRegistrationGenericFilter<args_info_clitkAffineRegistration>::New();
+ filter->SetInputVVImages(inputs);
+ filter->SetArgsInfo(mArgsInfo);
+ DD("ArgsInfo given in");
+ filter->EnableReadOnDisk(false);
+ filter->Update();
+ DD("I am done...! Updated");
+ vvImage::Pointer output = filter->GetOutputVVImage();
+ DD("filter getoutput done...");
+ std::ostringstream osstream;
+ osstream << "Registered" << "_ "
+ << mCurrentSlicerManager->GetSlicer(0)->GetFileName() << ".mhd";
+ AddImage(output,osstream.str());
+
+ QApplication::restoreOverrideCursor();
+ close();
}
//------------------------------------------------------------------------------
//------------------------------------------------------------------------------
-void vvToolRigidReg::UpdateXtranslider()
+void vvToolRigidReg::UpdateTransform(bool slider_enabled)
{
+ vtkSmartPointer<vtkTransform> transform_final=vtkSmartPointer<vtkTransform>::New();
+ transform_final->SetMatrix(mInitialMatrix);
+ transform_final->PostMultiply();
+ //Rotations
+ double x=0, y=0 ,z=0;
+ x= Xval->text().toDouble();
+ y= Yval->text().toDouble();
+ z= Zval->text().toDouble();
+ transform_final->Translate(-x,-y,-z);
+ if(slider_enabled){
+ transform_final->RotateY(yrot_slider->value());
+ transform_final->RotateX(xrot_slider->value());
+ transform_final->RotateZ(zrot_slider->value());
+ }
+ else{
+ transform_final->RotateY(yrot_sb->value());
+ transform_final->RotateX(xrot_sb->value());
+ transform_final->RotateZ(zrot_sb->value());
+ }
+ transform_final->Translate(x,y,z);
+ transform_final->PreMultiply();
+ if(slider_enabled){
+ transform_final->Translate(xtrans_slider->value()*mInput1->GetImage()->GetSpacing()[0],0,0);
+ transform_final->Translate(0,ytrans_slider->value()*mInput1->GetImage()->GetSpacing()[1],0);
+ transform_final->Translate(0,0,ztrans_slider->value()*mInput1->GetImage()->GetSpacing()[2]);
+ }
+ else{
+ transform_final->Translate(xtrans_sb->value(),0,0);
+ transform_final->Translate(0,ytrans_sb->value(),0);
+ transform_final->Translate(0,0,ztrans_sb->value());
+ }
+ SetTransform(transform_final->GetMatrix());
+ UpdateTextEditor(transform_final->GetMatrix(),textEdit);
+}
+//------------------------------------------------------------------------------
+
- int diff=0;
- diff=xtrans_slider->value()-xtrans_sb->value();
- this->SetTransform(diff, 0, 0, 0, 0, 0);
- xtrans_sb->setValue(xtrans_slider->value());
+//------------------------------------------------------------------------------
+void vvToolRigidReg::SaveFile()
+{
+ //Write the Transformation Matrix
+ QString f1 = QFileDialog::getSaveFileName(this, tr("Save Transformation Matrix File"),
+ mMainWindow->GetInputPathName(),
+ tr("Text (*.mat *.txt *.doc *.rtf)"));
+ QFile file1(f1);
+ std::vector<QString> transparameters;
+ QString line1;
+
+ for(int i =0;i<4;i++)
+ for(int j=0;j<4;j++)
+ transparameters.push_back(line1.setNum(mCurrentSlicerManager->GetImage()->GetTransform()->GetMatrix()->Element[i][j]));
+
+ if (file1.open(QFile::WriteOnly | QFile::Truncate)) {
+ QTextStream out1(&file1);
+ for(int i =0;i<4;i++){
+ for(int j=0;j<4;j++) {
+ out1<<transparameters[i*4+j]+"\t";
+ }
+ out1<<"\n";
+ }
+ }
+ else
+ {
+ QMessageBox::information(this,"Warning","Error Reading Parameters");
+ }
}
//------------------------------------------------------------------------------
//------------------------------------------------------------------------------
-void vvToolRigidReg::UpdateYtranslider()
+void vvToolRigidReg::ReadFile()
{
- int diff=0;
- diff=ytrans_slider->value()-ytrans_sb->value();
- this->SetTransform(0, diff, 0, 0, 0, 0);
- ytrans_sb->setValue(ytrans_slider->value());
+ std::string x;
+ QString center;
+ double * orientations=new double[3];
+ double * translations=new double[3];
+ vtkMatrix4x4 *matrix=vtkMatrix4x4::New();
+ vtkSmartPointer<vtkTransform> transform = mCurrentSlicerManager->GetImage()->GetTransform();
+
+ //Open File to read the transformation parameters
+
+ transform->SetMatrix(matrix);
+ transform->GetOrientation(orientations);
+ transform->PostMultiply();
+
+ //Obtain the Rotation Center , set it to origin
+ Xval->setText(center.setNum(0));
+ Yval->setText(center.setNum(0));
+ Zval->setText(center.setNum(0));
+
+ //In the Order or Y X Z //
+ //now postmultiply for the rotations
+ SetTransform(0,0,0,0,0,-rint(orientations[2]),false);
+ SetTransform(0,0,0,-rint(orientations[0]),0,0,false);
+ SetTransform(0,0,0,0,-rint(orientations[1]),0,false);
+
+ transform->GetPosition(translations);
+ transform->Identity();
+
+ DD(translations[0]/mInput1->GetImage()->GetSpacing()[0]);
+ DD(translations[1]/mInput1->GetImage()->GetSpacing()[1]);
+ DD(translations[2]/mInput1->GetImage()->GetSpacing()[2]);
+ DD(orientations[0]);
+ DD(orientations[1]);
+ DD(orientations[2]);
+ //set the sliders and spin box values
+ InitializeSliders(rint(translations[0]),rint(translations[1])
+ ,rint(translations[2]),rint(orientations[0]),rint(orientations[1]),rint(orientations[2]),true);
+ SetTransform(matrix);
}
//------------------------------------------------------------------------------
//------------------------------------------------------------------------------
-void vvToolRigidReg::UpdateZtranslider()
+void vvToolRigidReg::ResetTransform()
{
- int diff=0;
- diff=ztrans_slider->value()-ztrans_sb->value();
- this->SetTransform(0, 0, diff, 0, 0, 0);
- ztrans_sb->setValue(ztrans_slider->value());
+ vtkMatrix4x4 *matrix = vtkMatrix4x4::New();
+ for(int i=0;i<4;i++)
+ for(int j=0;j<4;j++)
+ matrix->SetElement(i,j,mInitialMatrix[i*4+j]);
+ SetTransform(matrix);
+ SetRotationCenter();
+ SetSliderRanges();
+ UpdateTextEditor(matrix,textEdit);
}
//------------------------------------------------------------------------------
//------------------------------------------------------------------------------
-void vvToolRigidReg::UpdateXrotslider()
+void vvToolRigidReg::SetRotationCenter()
{
- int diff=0;
- diff=xrot_slider->value()-xrot_sb->value();
- this->SetTransform(0, 0, 0, diff, 0, 0);
- xrot_sb->setValue(xrot_slider->value());
+ //default image rotation center is the center of the image
+ QString xcord,ycord,zcord;
+ std::vector<double> imageorigin;
+ imageorigin=mInput1->GetImage()->GetOrigin();
+ DD("before bug");
+ xcord=xcord.setNum(imageorigin[0]+mImageSize[0]*mInput1->GetImage()->GetSpacing()[0]/2, 'g', 3);
+ ycord=ycord.setNum(imageorigin[1]+mImageSize[1]*mInput1->GetImage()->GetSpacing()[1]/2, 'g', 3);
+ zcord=zcord.setNum(imageorigin[2]+mImageSize[2]*mInput1->GetImage()->GetSpacing()[2]/2, 'g', 3);
+
+ Xval->setText(xcord);
+ Yval->setText(ycord);
+ Zval->setText(zcord);
+ InitializeSliders(0,0,0,0,0,0,true);
}
//------------------------------------------------------------------------------
//------------------------------------------------------------------------------
-void vvToolRigidReg::UpdateYrotslider()
+void vvToolRigidReg::InitializeSliders(double xtrans,double ytrans, double ztrans, double xrot, double yrot, double zrot,bool sliders)
{
- int diff=0;
- diff=yrot_slider->value()-yrot_sb->value();
- this->SetTransform(0, 0, 0, 0, diff, 0);
- yrot_sb->setValue(yrot_slider->value());
+
+ xtrans_sb->blockSignals(true);
+ xtrans_sb->setSingleStep(mInput1->GetImage()->GetSpacing()[0]);
+ xtrans_sb->setValue(xtrans);
+ xtrans_sb->blockSignals(false);
+ ytrans_sb->blockSignals(true);
+ ytrans_sb->setSingleStep(mInput1->GetImage()->GetSpacing()[1]);
+ ytrans_sb->setValue(ytrans);
+ ytrans_sb->blockSignals(false);
+ ztrans_sb->blockSignals(true);
+ ztrans_sb->setSingleStep(mInput1->GetImage()->GetSpacing()[2]);
+ ztrans_sb->setValue(ztrans);
+ ztrans_sb->blockSignals(false);
+
+ if(sliders){
+ xtrans_slider->blockSignals(true);
+ xtrans_slider->setValue(rint(xtrans));
+ xtrans_slider->blockSignals(false);
+ ytrans_slider->blockSignals(true);
+ ytrans_slider->setValue(rint(ytrans));
+ ytrans_slider->blockSignals(false);
+ ztrans_slider->blockSignals(true);
+ ztrans_slider->setValue(rint(ztrans));
+ ztrans_slider->blockSignals(false);
+ }
+ xrot_sb->blockSignals(true);
+ xrot_sb->setValue(xrot);
+ xrot_sb->blockSignals(false);
+ yrot_sb->blockSignals(true);
+ yrot_sb->setValue(yrot);
+ yrot_sb->blockSignals(false);
+ zrot_sb->blockSignals(true);
+ zrot_sb->setValue(zrot);
+ zrot_sb->blockSignals(false);
+ xrot_slider->blockSignals(true);
+ xrot_slider->setValue(xrot);
+ xrot_slider->blockSignals(false);
+ yrot_slider->blockSignals(true);
+ yrot_slider->setValue(yrot);
+ yrot_slider->blockSignals(false);
+ zrot_slider->blockSignals(true);
+ zrot_slider->setValue(zrot);
+ zrot_slider->blockSignals(false);
}
//------------------------------------------------------------------------------
//------------------------------------------------------------------------------
-void vvToolRigidReg::UpdateZrotslider()
+void vvToolRigidReg::SetSliderRanges()
{
- int diff=0;
- diff=zrot_slider->value()-zrot_sb->value();
- this->SetTransform(0, 0, 0, 0, 0, diff);
- zrot_sb->setValue(zrot_slider->value());
+ xtrans_slider->blockSignals(true);
+ xtrans_slider->setRange(-2000,2000);
+ xtrans_slider->blockSignals(false);
+
+ ytrans_slider->blockSignals(true);
+ ytrans_slider->setRange(-2000,2000);
+ ytrans_slider->blockSignals(false);
+
+ ztrans_slider->blockSignals(true);
+ ztrans_slider->setRange(-2000,2000);
+ ztrans_slider->blockSignals(false);
+
+ xtrans_sb->blockSignals(true);
+ xtrans_sb->setRange(-2000,2000);
+ xtrans_sb->setDecimals(3);
+ xtrans_sb->blockSignals(false);
+
+ ytrans_sb->blockSignals(true);
+ ytrans_sb->setRange(-2000,2000);
+ ytrans_sb->setDecimals(3);
+ ytrans_sb->blockSignals(false);
+
+ ztrans_sb->blockSignals(true);
+ ztrans_sb->setRange(-2000,2000);
+ ztrans_sb->setDecimals(3);
+ ztrans_sb->blockSignals(false);
+
+ xrot_slider->blockSignals(true);
+ xrot_slider->setRange(-360,360);
+ xrot_slider->blockSignals(false);
+
+ yrot_slider->blockSignals(true);
+ yrot_slider->setRange(-360,360);
+ yrot_slider->blockSignals(false);
+
+ zrot_slider->blockSignals(true);
+ zrot_slider->setRange(-360,360);
+ zrot_slider->blockSignals(false);
+
+ xrot_sb->blockSignals(true);
+ xrot_sb->setRange(-360,360);
+ xrot_sb->blockSignals(false);
+
+ yrot_sb->blockSignals(true);
+ yrot_sb->setRange(-360,360);
+ yrot_sb->blockSignals(false);
+
+ zrot_sb->blockSignals(true);
+ zrot_sb->setRange(-360,360);
+ zrot_sb->blockSignals(false);
}
git://git.creatis.insa-lyon.fr / clitk.git / blobdiff