#include <vtkImageData.h>
#include <vtkSmartPointer.h>
#include <vtkTransform.h>
+#include <vvImageReader.h>
#include "vvImage.h"
#include "vvSlicer.h"
#include <QFile>
+#include "clitkTransformUtilities.h"
#include <QString>
#include <QMessageBox>
#include <vvMainWindow.h>
{
// GUI Initialization
Ui_vvToolRigidReg::setupUi(mToolWidget);
+ QSize qsize;
+ qsize.setHeight(470);
+ qsize.setWidth(850);
+ mToolWidget->setFixedSize(qsize);
+
+
+ // Set how many inputs are needed for this tool
+ // mFilter = new clitk::AffineTransformGenericFilter<args_info_clitkAffineTransform>;
// Set how many inputs are needed for this tool
- AddInputSelector("Select the Reference Image");
- AddInputSelector("Select the Target Image");
- mOrder=QString("Rotation Order: ");
-
-
+ AddInputSelector("Select moving image");
+ AddInputSelector("Select fixed image");
}
//------------------------------------------------------------------------------
//------------------------------------------------------------------------------
bool vvToolRigidReg::close()
{
-
+ ResetTransform();
+ RemoveOverlay();
return vvToolWidgetBase::close();
}
//------------------------------------------------------------------------------
//------------------------------------------------------------------------------
void vvToolRigidReg::reject()
{
- mInput2->Reload();
- for(int i=0;i<mCurrentSlicerManager->NumberOfSlicers();i++)
- {
- mInput1->GetSlicer(i)->RemoveActor("overlay",0);
- mInput1->SetColorMap(0);
- mInput1->Render();
- }
- return vvToolWidgetBase::reject();
+ return vvToolWidgetBase::reject();
+}
+//------------------------------------------------------------------------------
+
+//------------------------------------------------------------------------------
+void vvToolRigidReg::GetArgsInfoFromGUI()
+{
+ DD("works");
}
//------------------------------------------------------------------------------
//inputs
mInput1 = l[0];
mInput2 = l[1];
+
+ UpdateTextEditor(mCurrentSlicerManager->GetImage()->GetTransform()->GetMatrix(),textEdit_2);
+
+ for(int i =0;i<4;i++)
+ for(int j=0;j<4;j++)
+ mInitialMatrix[i*4+j]=mCurrentSlicerManager->GetImage()->GetTransform()->GetMatrix()->GetElement(i,j);
+
+ if(mInput1->GetFileName()==mInput2->GetFileName())
+ {
+ QMessageBox::information(this, "Warning","Your Reference and Target Images are the same");
+ }
mTwoInputs = true;
SetOverlay();
- this->mImageSize=mCurrentSlicerManager->GetImage()->GetSize();
-
+ mImageSize=mInput1->GetImage()->GetSize();
SetRotationCenter();
SetSliderRanges();
-
- //connect all sigs to slots
- connect(resetbutton, SIGNAL(pressed()), this, SLOT(ResetTransform()));
-
- connect(Xval, SIGNAL(editingFinished()), this, SLOT(SetXvalue()));
- connect(Yval, SIGNAL(editingFinished()), this, SLOT(SetYvalue()));
- connect(Zval, SIGNAL(editingFinished()), this, SLOT(SetZvalue()));
-
- connect(xtrans_slider, SIGNAL(sliderReleased()), this, SLOT(SetOrderXtrans()));
- connect(ytrans_slider, SIGNAL(sliderReleased()), this, SLOT(SetOrderYtrans()));
- connect(ztrans_slider, SIGNAL(sliderReleased()), this, SLOT(SetOrderZtrans()));
- connect(xrot_slider, SIGNAL(sliderReleased()), this, SLOT(SetOrderXrot()));
- connect(yrot_slider, SIGNAL(sliderReleased()), this, SLOT(SetOrderYrot()));
- connect(zrot_slider, SIGNAL(sliderReleased()), this, SLOT(SetOrderZrot()));
-
-
- connect(xtrans_slider, SIGNAL(valueChanged(int)), this, SLOT(UpdateXtranslider()));
-
- connect(ytrans_slider, SIGNAL(valueChanged(int)), this, SLOT(UpdateYtranslider()));
- connect(ztrans_slider, SIGNAL(valueChanged(int)), this, SLOT(UpdateZtranslider()));
-
-
- connect(xrot_slider, SIGNAL(valueChanged(int)), this, SLOT(UpdateXrotslider()));
- connect(yrot_slider, SIGNAL(valueChanged(int)), this, SLOT(UpdateYrotslider()));
- connect(zrot_slider, SIGNAL(valueChanged(int)), this, SLOT(UpdateZrotslider()));
-
-
- connect(xtrans_sb, SIGNAL(valueChanged(int)), this, SLOT(UpdateXtransb()));
- connect(ytrans_sb, SIGNAL(valueChanged(int)), this, SLOT(UpdateYtransb()));
- connect(ztrans_sb, SIGNAL(valueChanged(int)), this, SLOT(UpdateZtransb()));
- connect(xrot_sb, SIGNAL(valueChanged(int)), this, SLOT(UpdateXrotsb()));
- connect(yrot_sb, SIGNAL(valueChanged(int)), this, SLOT(UpdateYrotsb()));
- connect(zrot_sb, SIGNAL(valueChanged(int)), this, SLOT(UpdateZrotsb()));
-
-
- connect(loadbutton, SIGNAL(pressed()), this, SLOT(ReadFile()));
- connect(savebutton, SIGNAL(pressed()), this, SLOT(SaveFile()));
+
+ //connect all sigs to slots
+ connect(resetbutton, SIGNAL(pressed()), this, SLOT(ResetTransform()));
+ connect(tab2loadbutton, SIGNAL(pressed()), this, SLOT(AutoRegister()));
+
+ connect(Xval, SIGNAL(editingFinished()), this, SLOT(SetXvalue()));
+ connect(Yval, SIGNAL(editingFinished()), this, SLOT(SetYvalue()));
+ connect(Zval, SIGNAL(editingFinished()), this, SLOT(SetZvalue()));
+
+ connect(xtrans_slider, SIGNAL(valueChanged(int)), this, SLOT(UpdateTransform_sliders()));
+ connect(ytrans_slider, SIGNAL(valueChanged(int)), this, SLOT(UpdateTransform_sliders()));
+ connect(ztrans_slider, SIGNAL(valueChanged(int)), this, SLOT(UpdateTransform_sliders()));
+
+
+ connect(xrot_slider, SIGNAL(valueChanged(int)), this, SLOT(UpdateTransform_sliders()));
+ connect(yrot_slider, SIGNAL(valueChanged(int)), this, SLOT(UpdateTransform_sliders()));
+ connect(zrot_slider, SIGNAL(valueChanged(int)), this, SLOT(UpdateTransform_sliders()));
+
+ connect(xtrans_sb, SIGNAL(valueChanged(double)), this, SLOT(UpdateTransform_sb()));
+ connect(ytrans_sb, SIGNAL(valueChanged(double)), this, SLOT(UpdateTransform_sb()));
+ connect(ztrans_sb, SIGNAL(valueChanged(double)), this, SLOT(UpdateTransform_sb()));
+ connect(xrot_sb, SIGNAL(valueChanged(double)), this, SLOT(UpdateTransform_sb()));
+ connect(yrot_sb, SIGNAL(valueChanged(double)), this, SLOT(UpdateTransform_sb()));
+ connect(zrot_sb, SIGNAL(valueChanged(double)), this, SLOT(UpdateTransform_sb()));
+
+ connect(loadbutton, SIGNAL(pressed()), this, SLOT(ReadFile()));
+ connect(savebutton, SIGNAL(pressed()), this, SLOT(SaveFile()));
+
}
//------------------------------------------------------------------------------
//------------------------------------------------------------------------------
void vvToolRigidReg::apply()
{
- std::ostringstream osstream;
- osstream << "Transformed_"
- << mInput2->GetSlicer(0)->GetFileName() << ".mhd";
- AddImage(mInput2->GetImage(),osstream.str());
- QApplication::restoreOverrideCursor();
- close();
+ RemoveOverlay();
}
//------------------------------------------------------------------------------
//------------------------------------------------------------------------------
void vvToolRigidReg::SetOverlay()
{
- mCurrentSlicerManager=mInput2;
- for (int i =0; i<mCurrentSlicerManager->NumberOfSlicers(); i++) {
- mInput1->GetSlicer(i)->SetOverlay(mInput2->GetImage());
- mInput1->GetSlicer(i)->SetActorVisibility("overlay",0,true);
- mInput1->SetColorMap();
- mInput1->Render();
+ for (int i =0; i<mCurrentSlicerManager->NumberOfSlicers(); i++) {
+ mCurrentSlicerManager->GetSlicer(i)->SetOverlay(mInput2->GetImage());
+ mCurrentSlicerManager->GetSlicer(i)->SetActorVisibility("overlay",0,true);
+ mCurrentSlicerManager->SetColorMap();
+ mCurrentSlicerManager->Render();
}
}
//------------------------------------------------------------------------------
+//------------------------------------------------------------------------------
+void vvToolRigidReg::RemoveOverlay()
+{
+ for(int i=0;i<mCurrentSlicerManager->NumberOfSlicers();i++)
+ {
+ mInput1->RemoveActor("overlay",0);
+ mInput1->SetColorMap(0);
+ mInput1->Render();
+ hide();
+ }
+}
+//------------------------------------------------------------------------------
+
//------------------------------------------------------------------------------
void vvToolRigidReg::SetXvalue()
{
//------------------------------------------------------------------------------
//------------------------------------------------------------------------------
-void vvToolRigidReg::SetTransform(double tX, double tY, double tZ, double aX, double aY, double aZ)
+void vvToolRigidReg::SetTransform(double tX, double tY, double tZ, double aX, double aY, double aZ,bool update)
{
-
- vtkSmartPointer<vtkTransform> transform = mCurrentSlicerManager->GetImage()->GetTransform();
+ vtkSmartPointer<vtkTransform> transform = mInput1->GetImage()->GetTransform();
transform->PostMultiply();
//Rotations
if (aX!=0 || aY!=0 || aZ!=0) {
}
//Translations
if (tX!=0||tY!=0||tZ!=0)
- transform->Translate(tX,tY,tZ);
-
- transform->Update();
-
- for (int i=0; i<mCurrentSlicerManager->NumberOfSlicers(); i++) {
- mCurrentSlicerManager->GetImage()->UpdateReslice();
- mCurrentSlicerManager->GetSlicer(i)->ForceUpdateDisplayExtent();
- mCurrentSlicerManager->GetSlicer(i)->Render();
- }
+ transform->Translate(tX*mInput1->GetImage()->GetSpacing()[0],tY*mInput1->GetImage()->GetSpacing()[1],tZ*mInput1->GetImage()->GetSpacing()[2]);
}
//------------------------------------------------------------------------------
{
vtkSmartPointer<vtkTransform> transform =mCurrentSlicerManager->GetImage()->GetTransform();
transform->SetMatrix(matrix);
- // mCurrentSlicerManager->GetImage()->SetTransform(transform);
- transform->PostMultiply();
- transform->Concatenate(matrix);
- transform->Update();
- mCurrentSlicerManager->GetImage()->SetTransform(transform);
+ Render();
+}
+//------------------------------------------------------------------------------
+
+//------------------------------------------------------------------------------
+void vvToolRigidReg::Render()
+{
for (int i=0; i<mCurrentSlicerManager->NumberOfSlicers(); i++) {
- mCurrentSlicerManager->GetImage()->UpdateReslice();
- mCurrentSlicerManager->GetSlicer(i)->ForceUpdateDisplayExtent();
- mCurrentSlicerManager->GetSlicer(i)->Render();
- }
+ mCurrentSlicerManager->GetSlicer(i)->ForceUpdateDisplayExtent();
+ mCurrentSlicerManager->GetSlicer(i)->Render();
+ }
}
//------------------------------------------------------------------------------
//------------------------------------------------------------------------------
- void vvToolRigidReg::UpdateTextEditor(vtkMatrix4x4 *matrix,QString SetOrder)
+ void vvToolRigidReg::UpdateTextEditor(vtkMatrix4x4 *matrix,QTextEdit* textEdit)
{
- QString str1,str2,str3;
-
+ QFont font=QFont("Times New Roman",11);
+ textEdit->setCurrentFont(font);
+ textEdit->update();
+
+ QString str1,str2,str3;
QColor color;
textEdit->clear();
textEdit->setAcceptRichText(true);
str2=textEdit->toPlainText();
- str2.append("Rotation Center(mm): \n");
+ str2.append("#Rotation Center(mm): \n#");
textEdit->setText(str2);
-
+
str2=textEdit->toPlainText();
textEdit->setTextColor(QColor(255,0,0));
str2.append(str3.append(Xval->text()));
str2.append(str3.append(Yval->text()));
textEdit->setText(str2);
str3.clear();
-
+
str2=textEdit->toPlainText();
str2.append("\t");
textEdit->setText(str2);
-
+
str2=textEdit->toPlainText();
str2.append(str3.append(Zval->text()));
str2=textEdit->toPlainText();
str2.append("\n");
textEdit->setText(str2);
-
+
str2=textEdit->toPlainText();
- str2.append("Transformation Matrix:\n");
+ str2.append("#Transformation Matrix(mm):\n");
textEdit->setText(str2);
-
-
for(int i=0;i<4;i++)
{
for(int j=0;j<4;j++)
{
str2=textEdit->toPlainText();
- str2.append("\t"+str1.setNum(matrix->Element[i][j]));
+ // str2.append("\t"+str1.setNum(matrix->Element[i][j]));
+ str2.append(QString("%1\t").arg(str1.setNum(matrix->Element[i][j]),2));
textEdit->setText(str2);
}
str2=textEdit->toPlainText();
- str2.append("\n");
+ str2.append("\n");
textEdit->setText(str2);
}
//QString str = QFileDialog::getOpenFileName();
textEdit->setTextColor(QColor(255,0,0));
textEdit->setFont(QFont("courrier new",12,4,true));
textEdit->toPlainText().toAscii();
-
+
str2=textEdit->toPlainText();
- mOrder+=SetOrder+QString(" ");
- str2.append(mOrder);
textEdit->setText(str2);
}
//------------------------------------------------------------------------------
//------------------------------------------------------------------------------
-void vvToolRigidReg::SetOrderXtrans()
+void vvToolRigidReg::UpdateTransform_sliders()
{
- if(mOrder.size()-mOrder.lastIndexOf("Tx")<10) //see if the same Transformation Parameter has been used back to back
- mOrder.chop(mOrder.size()-mOrder.lastIndexOf("Tx"));
- UpdateTextEditor(mCurrentSlicerManager->GetImage()->GetTransform()->GetMatrix(),QString("Tx: ")+xtrans_sb->text());
+ InitializeSliders(xtrans_slider->value()*mInput1->GetImage()->GetSpacing()[0],
+ ytrans_slider->value()*mInput1->GetImage()->GetSpacing()[1],
+ ztrans_slider->value()*mInput1->GetImage()->GetSpacing()[2],
+ xrot_slider->value(),yrot_slider->value(),zrot_slider->value(),false);
+ UpdateTransform(true);
+ Render();
}
//------------------------------------------------------------------------------
//------------------------------------------------------------------------------
-void vvToolRigidReg::SetOrderYtrans()
+void vvToolRigidReg::UpdateTransform_sb()
{
- if(mOrder.size()-mOrder.lastIndexOf("Ty")<10)
- mOrder.chop(mOrder.size()-mOrder.lastIndexOf("Ty"));
- UpdateTextEditor(mCurrentSlicerManager->GetImage()->GetTransform()->GetMatrix(),QString("Ty: ")+ytrans_sb->text());
+ InitializeSliders(xtrans_sb->value(),
+ ytrans_sb->value(),
+ ztrans_sb->value(),
+ xrot_sb->value(),yrot_sb->value(),zrot_sb->value(),false);
+ UpdateTransform(false);
+ Render();
}
-
-//------------------------------------------------------------------------------
-
-//------------------------------------------------------------------------------
-void vvToolRigidReg::SetOrderZtrans()
-{
- if(mOrder.size()-mOrder.lastIndexOf("Tz")<10)
- mOrder.chop(mOrder.size()-mOrder.lastIndexOf("Tz"));
- UpdateTextEditor(mCurrentSlicerManager->GetImage()->GetTransform()->GetMatrix(),QString("Tz: ")+ztrans_sb->text());
-}
-
//------------------------------------------------------------------------------
//------------------------------------------------------------------------------
-void vvToolRigidReg::SetOrderXrot()
+void vvToolRigidReg::AutoRegister()
{
- if(mOrder.size()-mOrder.lastIndexOf("Rx")<10)
- mOrder.chop(mOrder.size()-mOrder.lastIndexOf("Rx"));
- UpdateTextEditor(mCurrentSlicerManager->GetImage()->GetTransform()->GetMatrix(),QString("Rx: ")+xrot_sb->text());
-}
-
-//------------------------------------------------------------------------------
+ GetArgsInfoFromGUI();
+ //clitk::AffineRegistrationGenericFilter::Pointer filter =
+ // clitk::AffineRegistrationGenericFilter::New();
+ //filter->SetArgsInfo(mArgsInfo);
+ // filter->Update();
-//------------------------------------------------------------------------------
-void vvToolRigidReg::SetOrderYrot()
-{
- if(mOrder.size()-mOrder.lastIndexOf("Ry")<10) //see if the same Transformation Parameter has been used back to back
- mOrder.chop(mOrder.size()-mOrder.lastIndexOf("Ry"));
- UpdateTextEditor(mCurrentSlicerManager->GetImage()->GetTransform()->GetMatrix(),QString("Ry: ")+yrot_sb->text());
-}
-
-//------------------------------------------------------------------------------
-
-//------------------------------------------------------------------------------
-void vvToolRigidReg::SetOrderZrot()
-{
- if(mOrder.size()-mOrder.lastIndexOf("Rz")<10) //see if the same Transformation Parameter has been used back to back
- mOrder.chop(mOrder.size()-mOrder.lastIndexOf("Rz"));
- UpdateTextEditor(mCurrentSlicerManager->GetImage()->GetTransform()->GetMatrix(),QString("Rz: ")+zrot_sb->text());
-}
-//------------------------------------------------------------------------------
-
-//------------------------------------------------------------------------------
-void vvToolRigidReg::UpdateXtransb()
-{
- int diff=0;
- diff=xtrans_sb->value()-xtrans_slider->value();
- this->SetTransform(diff, 0, 0, 0, 0, 0);
- xtrans_slider->setValue(xtrans_sb->value());
- // UpdateTextEditor(mCurrentSlicerManager->GetImage()->GetTransform()->GetMatrix(),QString("Tx:")+xtrans_sb->text());
-
}
//------------------------------------------------------------------------------
//------------------------------------------------------------------------------
-void vvToolRigidReg::UpdateXtranslider()
+void vvToolRigidReg::UpdateTransform(bool slider_enabled)
{
- int diff=0;
- diff=xtrans_slider->value()-xtrans_sb->value();
- this->SetTransform(diff, 0, 0, 0, 0, 0);
- xtrans_sb->setValue(xtrans_slider->value());
- //UpdateTextEditor(mCurrentSlicerManager->GetImage()->GetTransform()->GetMatrix(),QString("Tx:")+xtrans_sb->text());
-}
-//------------------------------------------------------------------------------
-
-//------------------------------------------------------------------------------
-void vvToolRigidReg::UpdateYtransb()
-{
-
- int diff=0;
- diff=ytrans_sb->value()-ytrans_slider->value();
- this->SetTransform(0, diff, 0, 0, 0, 0);
- ytrans_slider->setValue(ytrans_sb->value());
-// UpdateTextEditor(mCurrentSlicerManager->GetImage()->GetTransform()->GetMatrix(),QString("Ty:")+ytrans_sb->text());
-}
-
-//------------------------------------------------------------------------------
-
-//------------------------------------------------------------------------------
-void vvToolRigidReg::UpdateYtranslider()
-{
- int diff=0;
- diff=ytrans_slider->value()-ytrans_sb->value();
- this->SetTransform(0, diff, 0, 0, 0, 0);
- ytrans_sb->setValue(ytrans_slider->value());
-// UpdateTextEditor(mCurrentSlicerManager->GetImage()->GetTransform()->GetMatrix(),QString("Ty:")+ytrans_sb->text());
-}
-//------------------------------------------------------------------------------
-
-//------------------------------------------------------------------------------
-void vvToolRigidReg::UpdateZtransb()
-{
-
- int diff=0;
- diff=ztrans_sb->value()-ztrans_slider->value();
- this->SetTransform(0, 0, diff, 0, 0, 0);
- ztrans_slider->setValue(ztrans_sb->value());
- // UpdateTextEditor(mCurrentSlicerManager->GetImage()->GetTransform()->GetMatrix(),QString("Tz:")+ztrans_sb->text());
-}
-
-//------------------------------------------------------------------------------
-
-//------------------------------------------------------------------------------
-void vvToolRigidReg::UpdateZtranslider()
-{
- int diff=0;
- diff=ztrans_slider->value()-ztrans_sb->value();
- this->SetTransform(0, 0, diff, 0, 0, 0);
- ztrans_sb->setValue(ztrans_slider->value());
-// UpdateTextEditor(mCurrentSlicerManager->GetImage()->GetTransform()->GetMatrix(),QString("Tz:")+ztrans_sb->text());
-}
-//------------------------------------------------------------------------------
-
-//------------------------------------------------------------------------------
-void vvToolRigidReg::UpdateXrotsb()
-{
-
- int diff=0;
- diff=xrot_sb->value()-xrot_slider->value();
- this->SetTransform(0, 0, 0, diff, 0, 0);
- xrot_slider->setValue(xrot_sb->value());
- // UpdateTextEditor(mCurrentSlicerManager->GetImage()->GetTransform()->GetMatrix(),QString("Rx:")+xrot_sb->text());
-}
-
-//------------------------------------------------------------------------------
-
-//------------------------------------------------------------------------------
-void vvToolRigidReg::UpdateXrotslider()
-{
- int diff=0;
- diff=xrot_slider->value()-xrot_sb->value();
- this->SetTransform(0, 0, 0, diff, 0, 0);
- xrot_sb->setValue(xrot_slider->value());
- // UpdateTextEditor(mCurrentSlicerManager->GetImage()->GetTransform()->GetMatrix(),QString("Rx:")+xrot_sb->text());
-}
-//------------------------------------------------------------------------------
-
-//------------------------------------------------------------------------------
-void vvToolRigidReg::UpdateYrotsb()
-{
-
- int diff=0;
- diff=yrot_sb->value()-yrot_slider->value();
- this->SetTransform(0, 0, 0, 0, diff, 0);
- yrot_slider->setValue(yrot_sb->value());
- // UpdateTextEditor(mCurrentSlicerManager->GetImage()->GetTransform()->GetMatrix(),QString("Ry:")+yrot_sb->text());
-}
-
-//------------------------------------------------------------------------------
-
-//------------------------------------------------------------------------------
-void vvToolRigidReg::UpdateYrotslider()
-{
- int diff=0;
- diff=yrot_slider->value()-yrot_sb->value();
- this->SetTransform(0, 0, 0, 0, diff, 0);
- yrot_sb->setValue(yrot_slider->value());
-// UpdateTextEditor(mCurrentSlicerManager->GetImage()->GetTransform()->GetMatrix(),QString("Ry:")+yrot_sb->text());
-}
-//------------------------------------------------------------------------------
-
-//------------------------------------------------------------------------------
-void vvToolRigidReg::UpdateZrotsb()
-{
-
- int diff=0;
- diff=zrot_sb->value()-zrot_slider->value();
- this->SetTransform(0, 0, 0, 0, 0,diff);
- zrot_slider->setValue(zrot_sb->value());
- // UpdateTextEditor(mCurrentSlicerManager->GetImage()->GetTransform()->GetMatrix(),QString("Rz:")+zrot_sb->text());
-}
-
-//------------------------------------------------------------------------------
-
-//------------------------------------------------------------------------------
-void vvToolRigidReg::UpdateZrotslider()
-{
- int diff=0;
- diff=zrot_slider->value()-zrot_sb->value();
- this->SetTransform(0, 0, 0, 0, 0, diff);
- zrot_sb->setValue(zrot_slider->value());
-// UpdateTextEditor(mCurrentSlicerManager->GetImage()->GetTransform()->GetMatrix(),QString("Rz:")+zrot_sb->text());
+ vtkSmartPointer<vtkTransform> transform_final=vtkSmartPointer<vtkTransform>::New();
+ transform_final->SetMatrix(mInitialMatrix);
+ transform_final->PostMultiply();
+ //Rotations
+ double x=0, y=0 ,z=0;
+ x= Xval->text().toDouble();
+ y= Yval->text().toDouble();
+ z= Zval->text().toDouble();
+ transform_final->Translate(-x,-y,-z);
+ if(slider_enabled){
+ transform_final->RotateY(yrot_slider->value());
+ transform_final->RotateX(xrot_slider->value());
+ transform_final->RotateZ(zrot_slider->value());
+ }
+ else{
+ transform_final->RotateY(yrot_sb->value());
+ transform_final->RotateX(xrot_sb->value());
+ transform_final->RotateZ(zrot_sb->value());
+ }
+ transform_final->Translate(x,y,z);
+ transform_final->PreMultiply();
+ if(slider_enabled){
+ transform_final->Translate(xtrans_slider->value()*mInput1->GetImage()->GetSpacing()[0],0,0);
+ transform_final->Translate(0,ytrans_slider->value()*mInput1->GetImage()->GetSpacing()[1],0);
+ transform_final->Translate(0,0,ztrans_slider->value()*mInput1->GetImage()->GetSpacing()[2]);
+ }
+ else{
+ transform_final->Translate(xtrans_sb->value(),0,0);
+ transform_final->Translate(0,ytrans_sb->value(),0);
+ transform_final->Translate(0,0,ztrans_sb->value());
+ }
+ SetTransform(transform_final->GetMatrix());
+ UpdateTextEditor(transform_final->GetMatrix(),textEdit);
}
//------------------------------------------------------------------------------
//------------------------------------------------------------------------------
void vvToolRigidReg::SaveFile()
-{
- QString s = QFileDialog::getSaveFileName(this, tr("Save File"),
- "/home/bharath/clitk3_27Apr/clitk3/build/bin/text.txt",
- tr("Text (*.txt *.doc *.rtf)"));
- QFile file(s);
- if (file.open(QFile::WriteOnly | QFile::Truncate)) {
- QTextStream out(&file);
- out << textEdit->toPlainText() ;
+{
+ //Write the Transformation Matrix
+ QString f1 = QFileDialog::getSaveFileName(this, tr("Save Transformation Matrix File"),
+ "/home",
+ tr("Text (*.mat *.txt *.doc *.rtf)"));
+ QFile file1(f1);
+ std::vector<QString> transparameters;
+ QString line1;
+
+ for(int i =0;i<4;i++)
+ for(int j=0;j<4;j++)
+ transparameters.push_back(line1.setNum(mCurrentSlicerManager->GetImage()->GetTransform()->GetMatrix()->Element[i][j]));
+
+ if (file1.open(QFile::WriteOnly | QFile::Truncate)) {
+ QTextStream out1(&file1);
+ for(int i =0;i<4;i++){
+ for(int j=0;j<4;j++) {
+ out1<<transparameters[i*4+j]+"\t";
+ }
+ out1<<"\n";
+ }
}
+ else
+ {
+ QMessageBox::information(this,"Warning","Error Reading Parameters");
+ }
}
//------------------------------------------------------------------------------
//------------------------------------------------------------------------------
void vvToolRigidReg::ReadFile()
-{
- QString parameters=QString("Tx: Ty: Tz:");
+{
+ std::string x;
+ QString center;
+ double * orientations=new double[3];
+ double * translations=new double[3];
+ vtkMatrix4x4 *matrix=vtkMatrix4x4::New();
vtkSmartPointer<vtkTransform> transform = mCurrentSlicerManager->GetImage()->GetTransform();
-
-
- QString s = QFileDialog::getOpenFileName(
+
+ //Open File to read the transformation parameters
+ QString file1 = QFileDialog::getOpenFileName(
this,
- "Choose a file",
- "/home/bharath/clitk3_27Apr/clitk3/build/bin/",
- "Text (*.txt *.rtf *.doc)");
- QFile file(s);
- ifstream readfile;
- std::string x;
- std::vector<QString> Qstr;
-
- readfile.open("text.txt");
- if (readfile.is_open())
+ "Choose the Transformation Parameters file",
+ "/home",
+ "Text (*.mat *.txt *.rtf *.doc)");
+ if (file1.isEmpty())
+ return;
+ QFile Qfile1(file1);
+ // ifstream readfile;
+ std::string transfile= file1.toStdString();
+ std::string filename1(transfile);
+ std::ifstream f1(filename1.c_str());
+ if(f1.is_open())
{
- while (!readfile.eof())
- {
- readfile >> x;
- Qstr.push_back(QString(x.c_str()));
- }
- readfile.close();
+ f1.close();
+ itk::Matrix<double, 4, 4> itkMat = clitk::ReadMatrix3D(transfile);
+ for(int j=0; j<4; j++)
+ for(int i=0; i<4; i++)
+ matrix->SetElement(i,j,itkMat[i][j]);
}
- else cout << "Unable to open file";
+ UpdateTextEditor(matrix,textEdit);
+ transform->SetMatrix(matrix);
+ transform->GetOrientation(orientations);
+ transform->PostMultiply();
- //Obtain the Rotation Center
- Xval->setText(Qstr.at(2));
- Yval->setText(Qstr.at(3));
- Zval->setText(Qstr.at(4));
+ //Obtain the Rotation Center , set it to origin
+ Xval->setText(center.setNum(0));
+ Yval->setText(center.setNum(0));
+ Zval->setText(center.setNum(0));
+
+ //In the Order or Y X Z //
+ //now postmultiply for the rotations
+ SetTransform(0,0,0,0,0,-round(orientations[2]),false);
+ SetTransform(0,0,0,-round(orientations[0]),0,0,false);
+ SetTransform(0,0,0,0,-round(orientations[1]),0,false);
-// InitializeSliders();
- double * orientations=new double[4];
- double * translations=new double[3];
- transform->PostMultiply();
- //Works currently wit the ROtation order Y Z X
transform->GetPosition(translations);
- transform->GetOrientation(orientations);
- /* xtrans_slider->setValue(Qstr.at(10).toDouble());
- UpdateXtranslider();
- ytrans_slider->setValue(Qstr.at(14).toDouble());
- UpdateYtranslider();
- ztrans_slider->setValue(Qstr.at(18).toDouble());
- UpdateZtranslider();
-*/
- DD(translations[0]);
- DD(translations[1]);
- DD(translations[2]);
+ transform->Identity();
+
+ DD(translations[0]/mInput1->GetImage()->GetSpacing()[0]);
+ DD(translations[1]/mInput1->GetImage()->GetSpacing()[1]);
+ DD(translations[2]/mInput1->GetImage()->GetSpacing()[2]);
DD(orientations[0]);
DD(orientations[1]);
DD(orientations[2]);
- DD(orientations[3]);
- DD(*transform->GetMatrix());
- //Obtain the Transformation Matrix
- /*QString str;
- str=QString(value.at(10).c_str());
- DD(str.toStdString());
- */
-// DD(value[6]);
- // DD(value[10]);
- //put the streamed values in matrix array
- /* for(int i=0;i<4;i++)
- {
- for(int j=0;j<4;j++)
- {
- matrix->Element[i][j]=value[i*4+j];
- }
- }
- SetTransform( matrix);*/
-
- /*xtrans_slider->setValue(value.at(10));
- ytrans_slider->setValue(value.at(14));
- ztrans_slider->setValue(value.at(18));
- UpdateXtranslider();
- UpdateYtranslider();
- UpdateZtranslider();*/
+ //set the sliders and spin box values
+ InitializeSliders(rint(translations[0]),rint(translations[1])
+ ,rint(translations[2]),rint(orientations[0]),rint(orientations[1]),rint(orientations[2]),true);
+ SetTransform(matrix);
}
//------------------------------------------------------------------------------
void vvToolRigidReg::ResetTransform()
{
vtkMatrix4x4 *matrix = vtkMatrix4x4::New();
- matrix->Identity();
-
+ for(int i=0;i<4;i++)
+ for(int j=0;j<4;j++)
+ matrix->SetElement(i,j,mInitialMatrix[i*4+j]);
+ SetTransform(matrix);
SetRotationCenter();
SetSliderRanges();
- SetTransform(matrix);
- mOrder.clear();
- mOrder=QString("Rotation Order: ");
- UpdateTextEditor(matrix,mOrder);
+ UpdateTextEditor(matrix,textEdit);
}
//------------------------------------------------------------------------------
//default image rotation center is the center of the image
QString xcord,ycord,zcord;
std::vector<double> imageorigin;
- imageorigin=mCurrentSlicerManager->GetImage()->GetOrigin();
-
- xcord=xcord.setNum(imageorigin[0]+mImageSize[0]*mCurrentSlicerManager->GetImage()->GetSpacing()[0]/2, 'g', 3);
- ycord=ycord.setNum(imageorigin[1]+mImageSize[1]*mCurrentSlicerManager->GetImage()->GetSpacing()[1]/2, 'g', 3);
- zcord=zcord.setNum(imageorigin[2]+mImageSize[2]*mCurrentSlicerManager->GetImage()->GetSpacing()[2]/2, 'g', 3);
+ imageorigin=mInput1->GetImage()->GetOrigin();
+
+ xcord=xcord.setNum(imageorigin[0]+mImageSize[0]*mInput1->GetImage()->GetSpacing()[0]/2, 'g', 3);
+ ycord=ycord.setNum(imageorigin[1]+mImageSize[1]*mInput1->GetImage()->GetSpacing()[1]/2, 'g', 3);
+ zcord=zcord.setNum(imageorigin[2]+mImageSize[2]*mInput1->GetImage()->GetSpacing()[2]/2, 'g', 3);
Xval->setText(xcord);
Yval->setText(ycord);
Zval->setText(zcord);
- InitializeSliders();
-}
-//------------------------------------------------------------------------------
-
-//------------------------------------------------------------------------------
-void vvToolRigidReg::InitializeSliders()
-{
- xtrans_slider->signalsBlocked();
- ytrans_slider->signalsBlocked();
- ztrans_slider->signalsBlocked();
- xtrans_sb->signalsBlocked();
- ytrans_sb->signalsBlocked();
- ztrans_sb->signalsBlocked();
- xrot_slider->signalsBlocked();
- yrot_slider->signalsBlocked();
- zrot_slider->signalsBlocked();
- xrot_sb->signalsBlocked();
- yrot_sb->signalsBlocked();
- zrot_sb->signalsBlocked();
-
- xtrans_sb->setValue(0);
- ytrans_sb->setValue(0);
- ztrans_sb->setValue(0);
-
- xtrans_slider->setValue(0);
- ytrans_slider->setValue(0);
- ztrans_slider->setValue(0);
-
- xrot_sb->setValue(0);
- yrot_sb->setValue(0);
- zrot_sb->setValue(0);
-
- xrot_slider->setValue(0);
- yrot_slider->setValue(0);
- zrot_slider->setValue(0);
+ InitializeSliders(0,0,0,0,0,0,true);
+}
+//------------------------------------------------------------------------------
+
+//------------------------------------------------------------------------------
+void vvToolRigidReg::InitializeSliders(double xtrans,double ytrans, double ztrans, double xrot, double yrot, double zrot,bool sliders)
+{
+
+ xtrans_sb->blockSignals(true);
+ xtrans_sb->setSingleStep(mInput1->GetImage()->GetSpacing()[0]);
+ xtrans_sb->setValue(xtrans);
+ xtrans_sb->blockSignals(false);
+ ytrans_sb->blockSignals(true);
+ ytrans_sb->setSingleStep(mInput1->GetImage()->GetSpacing()[1]);
+ ytrans_sb->setValue(ytrans);
+ ytrans_sb->blockSignals(false);
+ ztrans_sb->blockSignals(true);
+ ztrans_sb->setSingleStep(mInput1->GetImage()->GetSpacing()[2]);
+ ztrans_sb->setValue(ztrans);
+ ztrans_sb->blockSignals(false);
+
+ if(sliders){
+ xtrans_slider->blockSignals(true);
+ DD(xtrans_slider->value());
+ xtrans_slider->setValue(rint(xtrans));
+ xtrans_slider->blockSignals(false);
+ ytrans_slider->blockSignals(true);
+ ytrans_slider->setValue(rint(ytrans));
+ ytrans_slider->blockSignals(false);
+ ztrans_slider->blockSignals(true);
+ ztrans_slider->setValue(rint(ztrans));
+ ztrans_slider->blockSignals(false);
+ }
+ xrot_sb->blockSignals(true);
+ xrot_sb->setValue(xrot);
+ xrot_sb->blockSignals(false);
+ yrot_sb->blockSignals(true);
+ yrot_sb->setValue(yrot);
+ yrot_sb->blockSignals(false);
+ zrot_sb->blockSignals(true);
+ zrot_sb->setValue(zrot);
+ zrot_sb->blockSignals(false);
+ xrot_slider->blockSignals(true);
+ xrot_slider->setValue(xrot);
+ xrot_slider->blockSignals(false);
+ yrot_slider->blockSignals(true);
+ yrot_slider->setValue(yrot);
+ yrot_slider->blockSignals(false);
+ zrot_slider->blockSignals(true);
+ zrot_slider->setValue(zrot);
+ zrot_slider->blockSignals(false);
}
//------------------------------------------------------------------------------
//------------------------------------------------------------------------------
void vvToolRigidReg::SetSliderRanges()
{
- xtrans_slider->setMaximum(1000);
- xtrans_slider->setMinimum(-1000);
- ytrans_slider->setMaximum(1000);
- ytrans_slider->setMinimum(-1000);
- ztrans_slider->setMaximum(1000);
- ztrans_slider->setMinimum(-1000);
-
- xtrans_sb->setMaximum(1000);
- xtrans_sb->setMinimum(-1000);
- ytrans_sb->setMaximum(1000);
- ytrans_sb->setMinimum(-1000);
- ztrans_sb->setMaximum(1000);
- ztrans_sb->setMinimum(-1000);
-
- xrot_slider->setMaximum(360);
- xrot_slider->setMinimum(-360);
- yrot_slider->setMaximum(360);
- yrot_slider->setMinimum(-360);
- zrot_slider->setMaximum(360);
- zrot_slider->setMinimum(-360);
-
- xrot_sb->setMaximum(360);
- xrot_sb->setMinimum(-360);
- yrot_sb->setMaximum(360);
- yrot_sb->setMinimum(-360);
- zrot_sb->setMaximum(360);
- zrot_sb->setMinimum(-360);
+ xtrans_slider->blockSignals(true);
+ xtrans_slider->setRange(-2000,2000);
+ xtrans_slider->blockSignals(false);
+
+ ytrans_slider->blockSignals(true);
+ ytrans_slider->setRange(-2000,2000);
+ ytrans_slider->blockSignals(false);
+
+ ztrans_slider->blockSignals(true);
+ ztrans_slider->setRange(-2000,2000);
+ ztrans_slider->blockSignals(false);
+
+ xtrans_sb->blockSignals(true);
+ xtrans_sb->setRange(-2000,2000);
+ xtrans_sb->setDecimals(3);
+ xtrans_sb->blockSignals(false);
+
+ ytrans_sb->blockSignals(true);
+ ytrans_sb->setRange(-2000,2000);
+ ytrans_sb->setDecimals(3);
+ ytrans_sb->blockSignals(false);
+
+ ztrans_sb->blockSignals(true);
+ ztrans_sb->setRange(-2000,2000);
+ ztrans_sb->setDecimals(3);
+ ztrans_sb->blockSignals(false);
+
+ xrot_slider->blockSignals(true);
+ xrot_slider->setRange(-360,360);
+ xrot_slider->blockSignals(false);
+
+ yrot_slider->blockSignals(true);
+ yrot_slider->setRange(-360,360);
+ yrot_slider->blockSignals(false);
+
+ zrot_slider->blockSignals(true);
+ zrot_slider->setRange(-360,360);
+ zrot_slider->blockSignals(false);
+
+
+ xrot_sb->blockSignals(true);
+ xrot_sb->setRange(-360,360);
+ xrot_sb->blockSignals(false);
+
+ yrot_sb->blockSignals(true);
+ yrot_sb->setRange(-360,360);
+ yrot_sb->blockSignals(false);
+
+ zrot_sb->blockSignals(true);
+ zrot_sb->setRange(-360,360);
+ zrot_sb->blockSignals(false);
}
git://git.creatis.insa-lyon.fr / clitk.git / blobdiff