Authors belong to:
- University of LYON http://www.universite-lyon.fr/
- - Léon Bérard cancer center http://oncora1.lyon.fnclcc.fr
+ - Léon Bérard cancer center http://www.centreleonberard.fr
- CREATIS CNRS laboratory http://www.creatis.insa-lyon.fr
This software is distributed WITHOUT ANY WARRANTY; without even
- BSD See included LICENSE.txt file
- CeCILL-B http://www.cecill.info/licences/Licence_CeCILL-B_V1-en.html
-======================================================================-====*/
+===========================================================================**/
// vv
#include "vvToolRigidReg.h"
// qsize.setWidth(850);
// mToolWidget->setFixedSize(qsize);
// Set how many inputs are needed for this tool
- mFilter = new clitk::AffineRegistrationGenericFilter;
cb_transform->hide();
cb_interpolator->hide();
cb_optimizer->hide();
interpollabel->hide();
presetlabel->hide();
+
// Set how many inputs are needed for this tool
- AddInputSelector("Select moving image",mFilter);
- AddInputSelector("Select fixed image",mFilter);
+ AddInputSelector("Select moving image");
+ AddInputSelector("Select fixed image");
}
//------------------------------------------------------------------------------
mMainWindow->GetInputPathName(),
"Text (*.conf *.txt *.rtf *.doc)");
- DD(file.toStdString());
if (file.isEmpty())
return;
QFile Qfile1(file);
mConfigFile= file.toStdString();
CmdlineParser(1, 1);//1,1 - override, initialize
- cb_transform->show();
- cb_metric->show();
- cb_interpolator->show();
- cb_optimizer->show();
- cb_selectoutput->show();
- translabel->show();
- metriclabel->show();
- outputlabel->show();
- optimlabel->show();
- interpollabel->show();
cb_transform->setCurrentIndex(mArgsInfo.transform_arg);
cb_interpolator->setCurrentIndex(mArgsInfo.interp_arg);
cb_optimizer->setCurrentIndex(mArgsInfo.optimizer_arg);
cb_metric->setCurrentIndex(mArgsInfo.metric_arg);
- DD(cb_transform->currentIndex());
- DD(mArgsInfo.transform_arg);
}
//------------------------------------------------------------------------------
void vvToolRigidReg::Presets()
{
mConfigFile="Presets";
+ std::string matrixfilename;
if(cb_presets->currentIndex()==0)
{
mArgsInfo.reference_arg=new char;
mArgsInfo.rWeight_given=1.0;
mArgsInfo.rWeight_arg=50.0;
mArgsInfo.matrix_given=1;
- mArgsInfo.matrix_arg="/home/bharath/bin/writematrix.txt";
+ matrixfilename="/home/bharath/bin/writematrix.txt";//put ur path here for retreiving your matrix
+ mArgsInfo.matrix_arg=const_cast<char*>(matrixfilename.c_str());
UpdateTextEditor2();
}
else {
//------------------------------------------------------------------------------
void vvToolRigidReg::UpdateTextEditor2()
{
+
QString str1,str2,str3;
QColor color;
tab2textedit->clear();
//------------------------------------------------------------------------------
void vvToolRigidReg::TransformSelect()
{
+ if(!mConfigFile.empty()){
mArgsInfo.transform_arg=cb_transform->currentIndex();
UpdateTextEditor2();
+ }
+ else{
+ QMessageBox::information(this,"Warning","Load the Config File First!..");
+ }
}
//------------------------------------------------------------------------------
//------------------------------------------------------------------------------
void vvToolRigidReg::OptimizerSelect()
{
- mArgsInfo.optimizer_arg=cb_optimizer->currentIndex();
+ if(!mConfigFile.empty()){
+ mArgsInfo.optimizer_arg=cb_optimizer->currentIndex();
UpdateTextEditor2();
-
+ }
+ else{
+ QMessageBox::information(this,"Warning","Load the Config File First!..");
+ }
}
//------------------------------------------------------------------------------
//------------------------------------------------------------------------------
void vvToolRigidReg::InterpolatorSelect()
{
- mArgsInfo.interp_arg=cb_interpolator->currentIndex();
- UpdateTextEditor2();
+ if(!mConfigFile.empty()){
+ mArgsInfo.interp_arg=cb_interpolator->currentIndex();
+ UpdateTextEditor2();
+ }
+ else{
+ QMessageBox::information(this,"Warning","Load the Config File First!..");
+ }
}
//------------------------------------------------------------------------------
//------------------------------------------------------------------------------
void vvToolRigidReg::MetricSelect()
{
+ if(!mConfigFile.empty()){
mArgsInfo.metric_arg=cb_metric->currentIndex();
UpdateTextEditor2();
+ }
+ else{
+ QMessageBox::information(this,"Warning","Load the Config File First!..");
+ }
}
//------------------------------------------------------------------------------
//------------------------------------------------------------------------------
void vvToolRigidReg::OutputSelect()
{
-
+ std::ostringstream osstream;
+ if(!mConfigFile.empty()){
+ if(cb_selectoutput->currentIndex()==0){
+ mArgsInfo.output_given=0;
+ mArgsInfo.checker_after_given=0;
+ mArgsInfo.checker_before_given=0;
+ mArgsInfo.after_given=0;
+ mArgsInfo.before_given=0;
+ }//get transformed output image
+ if(cb_selectoutput->currentIndex()==1){
+ mArgsInfo.output_given=0;
+ mArgsInfo.checker_after_given=1;
+ mArgsInfo.checker_before_given=0;
+ mArgsInfo.after_given=0;
+ mArgsInfo.before_given=0;
+ }//get checkered image after reg
+ if(cb_selectoutput->currentIndex()==2){
+ mArgsInfo.output_given=0;
+ mArgsInfo.checker_after_given=0;
+ mArgsInfo.checker_before_given=1;
+ mArgsInfo.after_given=0;
+ mArgsInfo.before_given=0;
+ }//get checkered image before reg
+ if(cb_selectoutput->currentIndex()==3){
+ mArgsInfo.output_given=0;
+ mArgsInfo.checker_after_given=0;
+ mArgsInfo.checker_before_given=0;
+ mArgsInfo.after_given=1;
+ mArgsInfo.before_given=0;
+ }//get difference image after reg
+ if(cb_selectoutput->currentIndex()==4){
+ mArgsInfo.output_given=0;
+ mArgsInfo.checker_after_given=0;
+ mArgsInfo.checker_before_given=0;
+ mArgsInfo.after_given=0;
+ mArgsInfo.before_given=1;
+ }//get difference image before reg
+ }
+ else{
+ QMessageBox::information(this,"Warning","Load the Config File First!..");
+ }
}
//------------------------------------------------------------------------------
mInput2 = l[1];
UpdateTextEditor(mCurrentSlicerManager->GetImage()->GetTransform()->GetMatrix(),textEdit_2);
- DD(*mCurrentSlicerManager->GetImage()->GetTransform()->GetMatrix());
for(int i =0;i<4;i++)
{
for(int j=0;j<4;j++)
connect(loadbutton, SIGNAL(pressed()), this, SLOT(LoadFile()));
connect(savebutton, SIGNAL(pressed()), this, SLOT(SaveFile()));
+ connect(checkBox_rigid, SIGNAL(clicked(bool)), this, SLOT(CheckRigidReg()));
+ connect(checkBox_deformable, SIGNAL(clicked(bool)), this, SLOT(CheckDeformableReg()));
+
connect(cb_presets, SIGNAL(activated(int)), this, SLOT(Presets()));
connect(cb_transform, SIGNAL(activated(int)), this, SLOT(TransformSelect()));
connect(cb_optimizer, SIGNAL(activated(int)), this, SLOT(OptimizerSelect()));
}
//------------------------------------------------------------------------------
+//------------------------------------------------------------------------------
+void vvToolRigidReg::CheckRigidReg()
+{
+ checkBox_deformable->setChecked(false);
+ cb_transform->show();
+ cb_presets->show();
+ cb_metric->show();
+ cb_interpolator->show();
+ cb_optimizer->show();
+ cb_selectoutput->show();
+ translabel->show();
+ metriclabel->show();
+ outputlabel->show();
+ optimlabel->show();
+ interpollabel->show();
+ presetlabel->show();
+
+}
+//------------------------------------------------------------------------------
+
+//------------------------------------------------------------------------------
+void vvToolRigidReg::CheckDeformableReg()
+{
+ checkBox_rigid->setChecked(false);
+ presetlabel->hide();
+ cb_transform->show();
+ cb_metric->show();
+ cb_interpolator->show();
+ cb_optimizer->show();
+ cb_selectoutput->show();
+ cb_presets->hide();
+ translabel->show();
+ metriclabel->show();
+ outputlabel->show();
+ optimlabel->show();
+ interpollabel->show();
+}
+//------------------------------------------------------------------------------
+
//------------------------------------------------------------------------------
void vvToolRigidReg::SetOverlay(vvImage::Pointer Image)
{
- for (int i =0; i<mCurrentSlicerManager->NumberOfSlicers(); i++) {
+ for (int i =0; i<mCurrentSlicerManager->GetNumberOfSlicers(); i++) {
mCurrentSlicerManager->GetSlicer(i)->SetOverlay(Image);
mCurrentSlicerManager->GetSlicer(i)->SetActorVisibility("overlay",0,true);
mCurrentSlicerManager->SetColorMap();
//------------------------------------------------------------------------------
void vvToolRigidReg::RemoveOverlay()
{
- for(int i=0;i<mCurrentSlicerManager->NumberOfSlicers();i++)
- {
- mInput1->RemoveActor("overlay",0);
- mInput1->SetColorMap(0);
- mInput1->Render();
- hide();
- }
+ for(int i=0;i<mCurrentSlicerManager->GetNumberOfSlicers();i++)
+ {
+ mInput1->RemoveActor("overlay",0);
+ mInput1->SetColorMap(0);
+ mInput1->Render();
+ hide();
+ }
}
//------------------------------------------------------------------------------
}
//Translations
if (tX!=0||tY!=0||tZ!=0)
- transform->Translate(tX*mInput1->GetImage()->GetSpacing()[0],tY*mInput1->GetImage()->GetSpacing()[1],tZ*mInput1->GetImage()->GetSpacing()[2]);
+ transform->Translate(tX*mInput1->GetImage()->GetSpacing()[0],
+ tY*mInput1->GetImage()->GetSpacing()[1],
+ tZ*mInput1->GetImage()->GetSpacing()[2]);
}
//------------------------------------------------------------------------------
//------------------------------------------------------------------------------
void vvToolRigidReg::Render()
{
- for (int i=0; i<mCurrentSlicerManager->NumberOfSlicers(); i++) {
+ for (int i=0; i<mCurrentSlicerManager->GetNumberOfSlicers(); i++) {
mCurrentSlicerManager->GetSlicer(i)->ForceUpdateDisplayExtent();
mCurrentSlicerManager->GetSlicer(i)->Render();
}
clitk::AffineRegistrationGenericFilter::New();
filter->SetInputVVImages(inputs);
filter->SetArgsInfo(mArgsInfo);
- DD("ArgsInfo given in");
filter->EnableReadOnDisk(false);
filter->Update();
- vvImage::Pointer output = filter->GetOutputVVImage();
- //osstream << "Registered" << "_ "
- // << mCurrentSlicerManager->GetSlicer(0)->GetFileName() << ".mhd";
- //AddImage(output,osstream.str());
+ std::ostringstream osstream;
+ vvImage::Pointer output;
+ output = filter->GetOutputVVImage();
+ SetOverlay(output);
+
+ if(!cb_selectoutput->currentIndex()==0){
+ std::string outputstring;
+ output = filter->GetOutputVVImages()[1];
+ if(cb_selectoutput->currentIndex()==1){outputstring="Checkered_after_reg";}
+ if(cb_selectoutput->currentIndex()==2){outputstring="Checkered_before_reg";}
+ if(cb_selectoutput->currentIndex()==3){outputstring="Diff_after_reg";}
+ if(cb_selectoutput->currentIndex()==4){outputstring="Diff_before_reg";}
+ osstream << outputstring << mCurrentSlicerManager->GetSlicer(0)->GetFileName() << ".mhd";
+ AddImage(output,osstream.str());
+ filter->DeleteLastOutputImage();
+ }
+ DD(filter->GetOutputVVImages().capacity());
QApplication::restoreOverrideCursor();
ReadFile(true);
}
git://git.creatis.insa-lyon.fr / clitk.git / blobdiff