X-Git-Url: https://git.creatis.insa-lyon.fr/pubgit/?a=blobdiff_plain;ds=inline;f=examples%2FRegionGrow_Mori.cxx;fp=examples%2FRegionGrow_Mori.cxx;h=bdff6aa6b40d851685cff7bb6e91326da2d80c0e;hb=f287dfe5d76525d02c37224c0a09ed6277fbbb52;hp=0000000000000000000000000000000000000000;hpb=6de32f6e1f38b49698f370698520d406c903329d;p=FrontAlgorithms.git

diff --git a/examples/RegionGrow_Mori.cxx b/examples/RegionGrow_Mori.cxx
new file mode 100644
index 0000000..bdff6aa
--- /dev/null
+++ b/examples/RegionGrow_Mori.cxx
@@ -0,0 +1,142 @@
+#include <chrono>
+#include <iomanip>
+#include <itkCommand.h>
+#include <itkImage.h>
+#include <itkImageFileReader.h>
+#include <itkImageFileWriter.h>
+#include <itkBinaryThresholdImageFilter.h>
+
+#include <fpa/Image/MoriRegionGrow.h>
+
+// -------------------------------------------------------------------------
+static const unsigned int VDim = 3;
+typedef short                                             TPixel;
+typedef itk::Image< TPixel, VDim >                        TImage;
+typedef itk::ImageFileReader< TImage >                    TReader;
+typedef itk::ImageFileWriter< TImage >                    TWriter;
+typedef fpa::Image::MoriRegionGrow< TImage, TImage >      TFilter;
+typedef itk::BinaryThresholdImageFilter< TImage, TImage > TThreshold;
+
+// -------------------------------------------------------------------------
+class ShowProgressObject
+{
+public:
+  ShowProgressObject( itk::ProcessObject* o )
+    {
+      this->m_Process = o;
+    }
+  void ShowProgress( )
+    {
+      std::cerr
+        << "\rProgress " << std::fixed << std::setprecision( 2 )
+        << ( this->m_Process->GetProgress( ) * 100 )
+        << " %" << std::flush;
+    }
+  itk::ProcessObject::Pointer m_Process;
+};
+
+// -------------------------------------------------------------------------
+int main( int argc, char* argv[] )
+{
+  // Get arguments
+  if( argc < 6 + VDim )
+  {
+    std::cerr
+      << "Usage: " << argv[ 0 ]
+      << " input_image output_image lower upper delta";
+    for( unsigned int i = 0; i < VDim; ++i )
+      std::cerr << " s_" << i;
+    std::cerr << std::endl;
+    return( 1 );
+
+  } // fi
+  std::string input_image_filename = argv[ 1 ];
+  std::string output_image_filename = argv[ 2 ];
+  TPixel lower = std::atof( argv[ 3 ] );
+  TPixel upper = std::atof( argv[ 4 ] );
+  TPixel delta = std::atof( argv[ 5 ] );
+
+  TReader::Pointer reader = TReader::New( );
+  reader->SetFileName( input_image_filename );
+  try
+  {
+    reader->Update( );
+  }
+  catch( std::exception& err )
+  {
+    std::cerr << "ERROR: " << err.what( ) << std::endl;
+    return( 1 );
+
+  } // yrt
+
+  TFilter::Pointer filter = TFilter::New( );
+  filter->SetInput( reader->GetOutput( ) );
+  filter->SetThresholdRange( lower, upper, delta );
+  TImage::PointType pnt;
+  for( int i = 0; i < VDim; ++i )
+    pnt[ i ] = std::atof( argv[ i + 6 ] );
+
+  TImage::IndexType seed;
+  if( !( reader->GetOutput( )->TransformPhysicalPointToIndex( pnt, seed ) ) )
+  {
+    std::cerr << "ERROR: seed outside image." << std::endl;
+    return( 1 );
+
+  } // fi
+  filter->AddSeed( seed );
+
+  // to test ProgressReporter
+  /* TODO
+     ShowProgressObject progressWatch( filter );
+     typedef itk::SimpleMemberCommand< ShowProgressObject > CommandType;
+     CommandType::Pointer command = CommandType::New();
+     command->SetCallbackFunction( &progressWatch,
+     &ShowProgressObject::ShowProgress );
+     filter->AddObserver( itk::ProgressEvent( ), command );
+  */
+  std::chrono::time_point< std::chrono::system_clock > start, end;
+  start = std::chrono::system_clock::now( );
+  filter->Update( );
+  end = std::chrono::system_clock::now( );
+  std::chrono::duration< double > elapsed_seconds = end - start;
+
+  TThreshold::Pointer threshold = TThreshold::New( );
+  threshold->SetInput( filter->GetOutput( ) );
+  threshold->SetInsideValue( 255 );
+  threshold->SetOutsideValue( 0 );
+  threshold->SetLowerThreshold( 0 );
+  threshold->SetUpperThreshold( filter->GetOptimumThreshold( ) );
+  
+  TWriter::Pointer writer = TWriter::New( );
+  writer->SetInput( threshold->GetOutput( ) );
+  writer->SetFileName( output_image_filename );
+  try
+  {
+    writer->Update( );
+  }
+  catch( std::exception& err )
+  {
+    std::cerr << "ERROR: " << err.what( ) << std::endl;
+    return( 1 );
+
+  } // yrt
+
+  // Show data
+  TFilter::TCurve curve = filter->GetCurve( );
+  for( TFilter::TCurveData data: curve )
+  {
+    std::cout << data.XValue << " " << data.YValue << " " << data.Diff1 << std::endl;
+  }
+  std::cout
+    << std::endl
+    << "# Opt: "
+    << curve[ filter->GetOptimumThreshold( ) ].XValue
+    << "("
+    << filter->GetOptimumThreshold( )
+     << ")"
+    << std::endl;
+  std::cout << "Time: " << elapsed_seconds.count( ) << "s" << std::endl;
+  return( 0 );
+}
+
+// eof - $RCSfile$