X-Git-Url: https://git.creatis.insa-lyon.fr/pubgit/?a=blobdiff_plain;ds=sidebyside;f=filters%2FclitkGuerreroVentilationGenericFilter.cxx;h=9d1ab2dc0273f293447395e8fe46cf6448f5c3c3;hb=f6d1d7ca3b026997694d41f3afe1d16de2d06927;hp=04c1e93da814454c172252d3bd21d20445513a06;hpb=0b7c9b1e1215634b02cbd38d4e4ba101d6111ba8;p=clitk.git

diff --git a/filters/clitkGuerreroVentilationGenericFilter.cxx b/filters/clitkGuerreroVentilationGenericFilter.cxx
index 04c1e93..9d1ab2d 100644
--- a/filters/clitkGuerreroVentilationGenericFilter.cxx
+++ b/filters/clitkGuerreroVentilationGenericFilter.cxx
@@ -1,7 +1,7 @@
 /*=========================================================================
   Program:   vv                     http://www.creatis.insa-lyon.fr/rio/vv
 
-  Authors belong to: 
+  Authors belong to:
   - University of LYON              http://www.universite-lyon.fr/
   - Léon Bérard cancer center       http://oncora1.lyon.fnclcc.fr
   - CREATIS CNRS laboratory         http://www.creatis.insa-lyon.fr
@@ -21,7 +21,7 @@
  * @author Joël Schaerer
  * @date   20 April 2009
 
- * @brief  
+ * @brief
  -------------------------------------------------------------------*/
 
 #include "clitkGuerreroVentilationGenericFilter.h"
@@ -30,8 +30,9 @@
 #include <itkExtractImageFilter.h>
 
 //--------------------------------------------------------------------
-clitk::GuerreroVentilationGenericFilter::GuerreroVentilationGenericFilter() 
-  :ImageToImageGenericFilter<Self>("GuerreroVentilationGenericFilter") {
+clitk::GuerreroVentilationGenericFilter::GuerreroVentilationGenericFilter()
+  :ImageToImageGenericFilter<Self>("GuerreroVentilationGenericFilter")
+{
   blood_mass_factor=1.;
   InitializeImageType<2>();
   InitializeImageType<3>();
@@ -40,7 +41,8 @@ clitk::GuerreroVentilationGenericFilter::GuerreroVentilationGenericFilter()
 
 //--------------------------------------------------------------------
 template<unsigned int Dim>
-void clitk::GuerreroVentilationGenericFilter::InitializeImageType() {      
+void clitk::GuerreroVentilationGenericFilter::InitializeImageType()
+{
   ADD_IMAGE_TYPE(Dim, short);
 }
 //--------------------------------------------------------------------
@@ -48,30 +50,31 @@ void clitk::GuerreroVentilationGenericFilter::InitializeImageType() {
 
 //--------------------------------------------------------------------
 template<class ImageType>
-void clitk::GuerreroVentilationGenericFilter::UpdateWithInputImageType() {
+void clitk::GuerreroVentilationGenericFilter::UpdateWithInputImageType()
+{
 
-    // Input should be 2
-    assert(mInputFilenames.size() == 2);
+  // Input should be 2
+  assert(m_InputFilenames.size() == 2);
 
-    // Reading input
-    typedef ImageType InputImageType;
-    typename InputImageType::Pointer input = this->template GetInput<InputImageType>(0);
-    typename InputImageType::Pointer ref = this->template GetInput<InputImageType>(1);
+  // Reading input
+  typedef ImageType InputImageType;
+  typename InputImageType::Pointer input = this->template GetInput<InputImageType>(0);
+  typename InputImageType::Pointer ref = this->template GetInput<InputImageType>(1);
 
-    typedef itk::Image<float,InputImageType::ImageDimension> OutputImageType;
-    //    typename ImageType::Pointer input = clitk::readImage<ImageType>(mInputFilenames[0], mIOVerbose);
-    //typename ImageType::Pointer ref = clitk::readImage<ImageType>(mInputFilenames[1], mIOVerbose);
+  typedef itk::Image<float,InputImageType::ImageDimension> OutputImageType;
+  //    typename ImageType::Pointer input = clitk::readImage<ImageType>(mInputFilenames[0], mIOVerbose);
+  //typename ImageType::Pointer ref = clitk::readImage<ImageType>(mInputFilenames[1], mIOVerbose);
 
-    typedef itk::BinaryGuerreroFilter<ImageType,ImageType,OutputImageType> GFilterType;
-    typename GFilterType::Pointer filter = GFilterType::New();
-    filter->SetInput1(ref);
-    filter->SetInput2(input);
-    filter->SetBloodCorrectionFactor(blood_mass_factor);
-    filter->SetUseCorrectFormula(use_correct_formula);
-    filter->Update();
+  typedef itk::BinaryGuerreroFilter<ImageType,ImageType,OutputImageType> GFilterType;
+  typename GFilterType::Pointer filter = GFilterType::New();
+  filter->SetInput1(ref);
+  filter->SetInput2(input);
+  filter->SetBloodCorrectionFactor(blood_mass_factor);
+  filter->SetUseCorrectFormula(use_correct_formula);
+  filter->Update();
 
-    this->SetNextOutput<OutputImageType>(filter->GetOutput());
-    //clitk::writeImage<OutputImageType>(filter->GetOutput(), mOutputFilename, mIOVerbose);
-    //std::cout << "Warning: removed " << filter->GetFunctor().aberant_voxels << " aberant voxels from the ventilation image"
-        //<< std::endl;
+  this->SetNextOutput<OutputImageType>(filter->GetOutput());
+  //clitk::writeImage<OutputImageType>(filter->GetOutput(), mOutputFilename, mIOVerbose);
+  //std::cout << "Warning: removed " << filter->GetFunctor().aberant_voxels << " aberant voxels from the ventilation image"
+  //<< std::endl;
 }