X-Git-Url: https://git.creatis.insa-lyon.fr/pubgit/?a=blobdiff_plain;ds=sidebyside;f=src%2FgdcmHeader.cxx;h=19d008908d49f313d0015f87912bc6297513e53d;hb=2012716d624d631dcdb825fdd4470908e115a717;hp=5351d35b0516f2f2ac398397d4216eddb2ab47fb;hpb=4d59e5e9778e5abff13d13d576ef92ce81498b6f;p=gdcm.git diff --git a/src/gdcmHeader.cxx b/src/gdcmHeader.cxx index 5351d35b..19d00890 100644 --- a/src/gdcmHeader.cxx +++ b/src/gdcmHeader.cxx @@ -1,37 +1,53 @@ -// gdcmHeader.cxx -//----------------------------------------------------------------------------- -#include "gdcmHeader.h" - -#include -#include -#include // for isalpha +/*========================================================================= + + Program: gdcm + Module: $RCSfile: gdcmHeader.cxx,v $ + Language: C++ + Date: $Date: 2004/06/20 18:08:47 $ + Version: $Revision: 1.165 $ + + Copyright (c) CREATIS (Centre de Recherche et d'Applications en Traitement de + l'Image). All rights reserved. See Doc/License.txt or + http://www.creatis.insa-lyon.fr/Public/Gdcm/License.htm for details. + + This software is distributed WITHOUT ANY WARRANTY; without even + the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR + PURPOSE. See the above copyright notices for more information. + +=========================================================================*/ +#include "gdcmHeader.h" +#include "gdcmGlobal.h" #include "gdcmUtil.h" +#include "gdcmDebug.h" #include "gdcmTS.h" +#include "gdcmValEntry.h" +#include //----------------------------------------------------------------------------- // Constructor / Destructor /** - * \ingroup gdcmHeader - * \brief - * @param InFilename - * @param exception_on_error - * @param enable_sequences = true to allow the header - * to be parsed *inside* the SeQuences, - * when they have an actual length - * @param ignore_shadow = true if user wants to skip shadow groups - during parsing, to save memory space - *\TODO : may be we need one more bool, - * to allow skipping the private elements while parsing the header - * in order to save space + * \brief Constructor + * @param InFilename name of the file whose header we want to analyze + * @param exception_on_error whether we want to throw an exception or not + * @param enable_sequences = true to allow the header + * to be parsed *inside* the SeQuences, when they have an actual length + * @param ignore_shadow = true if user wants to skip shadow groups + * during parsing, to save memory space */ gdcmHeader::gdcmHeader(const char *InFilename, bool exception_on_error, bool enable_sequences, - bool ignore_shadow): - gdcmParser(InFilename,exception_on_error,enable_sequences,ignore_shadow) + bool ignore_shadow): + gdcmDocument(InFilename,exception_on_error,enable_sequences,ignore_shadow) { +/* + typedef struct { + guint32 totalSQlength; + guint32 alreadyParsedlength; + } pileElem; +*/ // for some ACR-NEMA images GrPixel, NumPixel is *not* 7fe0,0010 // We may encounter the 'RETired' (0x0028, 0x0200) tag @@ -44,32 +60,29 @@ gdcmHeader::gdcmHeader(const char *InFilename, // This IS the right place for the code - std::string ImageLocation = GetEntryByNumber(0x0028, 0x0200); - if ( ImageLocation == GDCM_UNFOUND ) { // Image Location - GrPixel = 0x7fe0; // default value - } else { - GrPixel = (guint16) atoi( ImageLocation.c_str() ); - } - if (GrPixel == 0xe07f) // sometimes Image Location value doesn't follow - GrPixel = 0x7fe0; // the supposed processor endianity. - // see gdcmData/cr172241.dcm - if (GrPixel != 0x7fe0) - // This is a kludge for old dirty Philips imager. - NumPixel = 0x1010; - else - NumPixel = 0x0010; - - TagKey key = gdcmDictEntry::TranslateToKey(GrPixel, NumPixel); - countGrPixel = GetEntry().count(key); + std::string ImageLocation = GetEntryByNumber(0x0028, 0x0200); + if ( ImageLocation == GDCM_UNFOUND ) { // Image Location + GrPixel = 0x7fe0; // default value + } else { + GrPixel = (guint16) atoi( ImageLocation.c_str() ); + } + if (GrPixel == 0xe07f) // sometimes Image Location value doesn't follow + GrPixel = 0x7fe0; // the supposed processor endianity. + // see gdcmData/cr172241.dcm + if (GrPixel != 0x7fe0) + // This is a kludge for old dirty Philips imager. + NumPixel = 0x1010; + else + NumPixel = 0x0010; + } /** - * \ingroup gdcmHeader - * \brief - * @param exception_on_error + * \brief Constructor + * @param exception_on_error whether we want to throw an exception or not */ gdcmHeader::gdcmHeader(bool exception_on_error) : - gdcmParser(exception_on_error) + gdcmDocument(exception_on_error) { } @@ -83,186 +96,37 @@ gdcmHeader::~gdcmHeader (void) { //----------------------------------------------------------------------------- // Print -// see gdcmParser.cxx + //----------------------------------------------------------------------------- // Public + /** - * \ingroup gdcmHeader * \brief This predicate, based on hopefully reasonable heuristics, - * decides whether or not the current gdcmParser was properly parsed + * decides whether or not the current gdcmHeader was properly parsed * and contains the mandatory information for being considered as * a well formed and usable Dicom/Acr File. - * @return true when gdcmParser is the one of a reasonable Dicom/Acr file, + * @return true when gdcmHeader is the one of a reasonable Dicom/Acr file, * false otherwise. */ bool gdcmHeader::IsReadable(void) { - if(!gdcmParser::IsReadable()) { + if(!gdcmDocument::IsReadable()) { return(false); } std::string res = GetEntryByNumber(0x0028, 0x0005); if ( res != GDCM_UNFOUND && atoi(res.c_str()) > 4 ) return false; // Image Dimensions - if ( !GetHeaderEntryByNumber(0x0028, 0x0100) ) + if ( !GetDocEntryByNumber(0x0028, 0x0100) ) return false; // "Bits Allocated" - if ( !GetHeaderEntryByNumber(0x0028, 0x0101) ) + if ( !GetDocEntryByNumber(0x0028, 0x0101) ) return false; // "Bits Stored" - if ( !GetHeaderEntryByNumber(0x0028, 0x0102) ) + if ( !GetDocEntryByNumber(0x0028, 0x0102) ) return false; // "High Bit" - if ( !GetHeaderEntryByNumber(0x0028, 0x0103) ) - return false; // "Pixel Representation" + if ( !GetDocEntryByNumber(0x0028, 0x0103) ) + return false; // "Pixel Representation" i.e. 'Sign' return true; } /** - * \ingroup gdcmHeader - * \brief Determines if the Transfer Syntax was already encountered - * and if it corresponds to a JPEGBaseLineProcess1 one. - * - * @return True when JPEGBaseLineProcess1found. False in all other cases. - */ -bool gdcmHeader::IsJPEGBaseLineProcess1TransferSyntax(void) { - gdcmHeaderEntry* Element = GetHeaderEntryByNumber(0x0002, 0x0010); - if ( !Element ) - return false; - LoadHeaderEntrySafe(Element); - - std::string Transfer = Element->GetValue(); - if ( Transfer == "1.2.840.10008.1.2.4.50" ) - return true; - return false; -} - -/** - * \ingroup gdcmHeader - * \brief Determines if the Transfer Syntax was already encountered - * and if it corresponds to a JPEGExtendedProcess2-4 one. - * - * @return True when JPEGExtendedProcess2-4 found. False in all other cases. - */ -bool gdcmHeader::IsJPEGExtendedProcess2_4TransferSyntax(void) { - gdcmHeaderEntry* Element = GetHeaderEntryByNumber(0x0002, 0x0010); - if ( !Element ) - return false; - LoadHeaderEntrySafe(Element); - return ( Element->GetValue() == "1.2.840.10008.1.2.4.51" ); -} - -/** - * \ingroup gdcmHeader - * \brief Determines if the Transfer Syntax was already encountered - * and if it corresponds to a JPEGExtendeProcess3-5 one. - * - * @return True when JPEGExtendedProcess3-5 found. False in all other cases. - */ -bool gdcmHeader::IsJPEGExtendedProcess3_5TransferSyntax(void) { - gdcmHeaderEntry* Element = GetHeaderEntryByNumber(0x0002, 0x0010); - if ( !Element ) - return false; - LoadHeaderEntrySafe(Element); - - std::string Transfer = Element->GetValue(); - if ( Transfer == "1.2.840.10008.1.2.4.52" ) - return true; - return false; -} - -/** - * \ingroup gdcmHeader - * \brief Determines if the Transfer Syntax was already encountered - * and if it corresponds to a JPEGSpectralSelectionProcess6-8 one. - * - * @return True when JPEGSpectralSelectionProcess6-8 found. False in all - * other cases. - */ -bool gdcmHeader::IsJPEGSpectralSelectionProcess6_8TransferSyntax(void) { - gdcmHeaderEntry* Element = GetHeaderEntryByNumber(0x0002, 0x0010); - if ( !Element ) - return false; - LoadHeaderEntrySafe(Element); - - std::string Transfer = Element->GetValue(); - if ( Transfer == "1.2.840.10008.1.2.4.53" ) - return true; - return false; -} - -/** - * \ingroup gdcmHeader - * \brief Determines if the Transfer Syntax was already encountered - * and if it corresponds to a RLE Lossless one. - * - * @return True when RLE Lossless found. False in all - * other cases. - */ -bool gdcmHeader::IsRLELossLessTransferSyntax(void) { - gdcmHeaderEntry* Element = GetHeaderEntryByNumber(0x0002, 0x0010); - if ( !Element ) - return false; - LoadHeaderEntrySafe(Element); - - std::string Transfer = Element->GetValue(); - if ( Transfer == "1.2.840.10008.1.2.5" ) { - return true; - } - return false; -} - -/** - * \ingroup gdcmHeader - * \brief Determines if Transfer Syntax was already encountered - * and if it corresponds to a JPEG Lossless one. - * - * @return True when RLE Lossless found. False in all - * other cases. - */ -bool gdcmHeader::IsJPEGLossless(void) { - gdcmHeaderEntry* Element = GetHeaderEntryByNumber(0x0002, 0x0010); - // faire qq chose d'intelligent a la place de ça - if ( !Element ) - return false; - LoadHeaderEntrySafe(Element); - - const char * Transfert = Element->GetValue().c_str(); - if ( memcmp(Transfert+strlen(Transfert)-2 ,"70",2)==0) return true; - if ( memcmp(Transfert+strlen(Transfert)-2 ,"55",2)==0) return true; - if (Element->GetValue() == "1.2.840.10008.1.2.4.57") return true; - - return false; -} - -/** - * \ingroup gdcmHeader - * \brief Determines if the Transfer Syntax was already encountered - * and if it corresponds to a JPEG200 one.0 - * - * @return True when JPEG2000 (Lossly or LossLess) found. False in all - * other cases. - */ -bool gdcmHeader::IsJPEG2000(void) { - gdcmHeaderEntry* Element = GetHeaderEntryByNumber(0x0002, 0x0010); - if ( !Element ) - return false; - LoadHeaderEntrySafe(Element); - - std::string Transfer = Element->GetValue(); - if ( (Transfer == "1.2.840.10008.1.2.4.90") - || (Transfer == "1.2.840.10008.1.2.4.91") ) - return true; - return false; -} - -/** - * \ingroup gdcmHeader - * \brief Predicate for dicom version 3 file. - * @return True when the file is a dicom version 3. - */ -bool gdcmHeader::IsDicomV3(void) { - // Checking if Transfert Syntax exists is enough - return (GetHeaderEntryByNumber(0x0002, 0x0010) != NULL); -} - -/** - * \ingroup gdcmHeader * \brief Retrieve the number of columns of image. * @return The encountered size when found, 0 by default. * 0 means the file is NOT USABLE. The caller will have to check @@ -280,7 +144,7 @@ int gdcmHeader::GetXSize(void) { * \brief Retrieve the number of lines of image. * \warning The defaulted value is 1 as opposed to gdcmHeader::GetXSize() * @return The encountered size when found, 1 by default - * (The file contains a Signal, not an Image). + * (The ACR-MEMA file contains a Signal, not an Image). */ int gdcmHeader::GetYSize(void) { std::string StrSize = GetEntryByNumber(0x0028,0x0010); @@ -300,7 +164,7 @@ int gdcmHeader::GetYSize(void) { * of frames of a multiframe. * \warning When present we consider the "Number of Frames" as the third * dimension. When absent we consider the third dimension as - * being the "Planes" tag content. + * being the ACR-NEMA "Planes" tag content. * @return The encountered size when found, 1 by default (single image). */ int gdcmHeader::GetZSize(void) { @@ -310,9 +174,7 @@ int gdcmHeader::GetZSize(void) { if (StrSize != GDCM_UNFOUND) return atoi(StrSize.c_str()); - // We then consider the "Planes" entry as the third dimension [we - // cannot retrieve by name since "Planes tag is present both in - // IMG (0028,0012) and OLY (6000,0012) sections of the dictionary]. + // We then consider the "Planes" entry as the third dimension StrSize = GetEntryByNumber(0x0028,0x0012); if (StrSize != GDCM_UNFOUND) return atoi(StrSize.c_str()); @@ -323,7 +185,6 @@ int gdcmHeader::GetZSize(void) { * \ingroup gdcmHeader * \brief Retrieve the number of Bits Stored (actually used) * (as opposite to number of Bits Allocated) - * * @return The encountered number of Bits Stored, 0 by default. * 0 means the file is NOT USABLE. The caller has to check it ! */ @@ -339,11 +200,10 @@ int gdcmHeader::GetBitsStored(void) { * \ingroup gdcmHeader * \brief Retrieve the number of Bits Allocated * (8, 12 -compacted ACR-NEMA files, 16, ...) - * * @return The encountered number of Bits Allocated, 0 by default. * 0 means the file is NOT USABLE. The caller has to check it ! */ -int gdcmHeader::GetBitsAllocated(void) { // TODO : move to gdcmFile +int gdcmHeader::GetBitsAllocated(void) { std::string StrSize = GetEntryByNumber(0x0028,0x0100); if (StrSize == GDCM_UNFOUND) return 0; // It's supposed to be mandatory @@ -355,15 +215,14 @@ int gdcmHeader::GetBitsAllocated(void) { // TODO : move to gdcmFile * \ingroup gdcmHeader * \brief Retrieve the number of Samples Per Pixel * (1 : gray level, 3 : RGB -1 or 3 Planes-) - * * @return The encountered number of Samples Per Pixel, 1 by default. * (Gray level Pixels) */ -int gdcmHeader::GetSamplesPerPixel(void) { // TODO : move to gdcmFile +int gdcmHeader::GetSamplesPerPixel(void) { std::string StrSize = GetEntryByNumber(0x0028,0x0002); if (StrSize == GDCM_UNFOUND) return 1; // Well, it's supposed to be mandatory ... - // but sometimes it's missing : we assume Gray pixels + // but sometimes it's missing : *we* assume Gray pixels return atoi(StrSize.c_str()); } @@ -371,7 +230,6 @@ int gdcmHeader::GetSamplesPerPixel(void) { // TODO : move to gdcmFile * \ingroup gdcmHeader * \brief Retrieve the Planar Configuration for RGB images * (0 : RGB Pixels , 1 : R Plane + G Plane + B Plane) - * * @return The encountered Planar Configuration, 0 by default. */ int gdcmHeader::GetPlanarConfiguration(void) { @@ -395,6 +253,8 @@ int gdcmHeader::GetPixelSize(void) { return 2; if (PixelType == "32U" || PixelType == "32S") return 4; + if (PixelType == "FD") + return 8; dbg.Verbose(0, "gdcmHeader::GetPixelSize: Unknown pixel type"); return 0; } @@ -409,8 +269,9 @@ int gdcmHeader::GetPixelSize(void) { * - 16S signed 16 bit, * - 32U unsigned 32 bit, * - 32S signed 32 bit, + * - FD floating double 64 bits (Not kosher DICOM, but so usefull!) * \warning 12 bit images appear as 16 bit. - * \ 24 bit images appear as 8 bit + * 24 bit images appear as 8 bit * @return 0S if nothing found. NOT USABLE file. The caller has to check */ std::string gdcmHeader::GetPixelType(void) { @@ -419,6 +280,8 @@ std::string gdcmHeader::GetPixelType(void) { dbg.Verbose(0, "gdcmHeader::GetPixelType: unfound Bits Allocated"); BitsAlloc = std::string("16"); } + if (BitsAlloc == "64") // ) + return ("FD"); if (BitsAlloc == "12") // It will be unpacked BitsAlloc = std::string("16"); else if (BitsAlloc == "24") // (in order no to be messed up @@ -441,110 +304,45 @@ std::string gdcmHeader::GetPixelType(void) { /** * \ingroup gdcmHeader * \brief Recover the offset (from the beginning of the file) - * \ of *image* pixels (not *icone image* pixels, if any !) - */ -size_t gdcmHeader::GetPixelOffset(void) { // TODO : move to gdcmFile - - // - // If the element (0x0088,0x0200) 'icone image sequence' is found - // (grPixel,numPixel) is stored twice : the first one for the icon - // the second one for the image ... - // pb : sometimes , (0x0088,0x0200) exists, but doesn't contain *anything* - // see gdcmData/MxTwinLossLess.dcm ... - - - /* - guint16 grPixel = GrPixel; - guint16 numPixel= NumPixel; - std::string ImageLocation = GetEntryByNumber(0x0028, 0x0200); - - if ( ImageLocation == GDCM_UNFOUND ) { // Image Location - grPixel = 0x7fe0; // default value - } else { - grPixel = (guint16) atoi( ImageLocation.c_str() ); - } - - if (grPixel == 0xe07f) // sometimes Image Location value doesn't follow - grPixel = 0x7fe0; // the supposed processor endianity. - // see gdcmData/cr172241.dcm - - if (grPixel != 0x7fe0) - // This is a kludge for old dirty Philips imager. - numPixel = 0x1010; - else - numPixel = 0x0010; + * of *image* pixels (not *icone image* pixels, if any !) + * @return Pixel Offset */ +size_t gdcmHeader::GetPixelOffset(void) { - IterHT it = GetHeaderEntrySameNumber(GrPixel,NumPixel); - //std::string icone = GetEntryByNumber(0x0088,0x0200); //icone image sequence - TagKey key = gdcmDictEntry::TranslateToKey(GrPixel,NumPixel); - gdcmHeaderEntry* PixelElement; - - //if (tagHT.count(key) == 1) - if (countGrPixel == 1) - PixelElement = (it.first)->second; - else - PixelElement = (++it.first)->second; - + gdcmDocEntry* PixelElement = GetDocEntryByNumber(GrPixel,NumPixel); + if (PixelElement) { return PixelElement->GetOffset(); - } - else + } else { +#ifdef GDCM_DEBUG + std::cout << "Big trouble : Pixel Element (" + << std::hex << GrPixel<<","<< NumPixel<< ") NOT found" + << std::endl; +#endif //GDCM_DEBUG return 0; + } } // TODO : unify those two (previous one and next one) /** * \ingroup gdcmHeader * \brief Recover the pixel area length (in Bytes) - * @return 0 by default. NOT USABLE file. The caller has to check. + * @return Pixel Element Length, as stored in the header + * (NOT the memory space necessary to hold the Pixels + * -in case of embeded compressed image-) + * 0 : NOT USABLE file. The caller has to check. */ -size_t gdcmHeader::GetPixelAreaLength(void) { +size_t gdcmHeader::GetPixelAreaLength(void) { + + gdcmDocEntry* PixelElement = GetDocEntryByNumber(GrPixel,NumPixel); -/* - // If this file complies with the norm we should encounter the - // "Image Location" tag (0x0028, 0x0200). This tag contains the - // the group that contains the pixel data (hence the "Pixel Data" - // is found by indirection through the "Image Location"). - // Inside the group pointed by "Image Location" the searched element - // is conventionally the element 0x0010 (when the norm is respected). - // When the "Image Location" is absent we default to group 0x7fe0. - - - guint16 grPixel; - guint16 numPixel; - std::string ImageLocation = GetEntryByNumber(0x0028, 0x0200); - if ( ImageLocation == GDCM_UNFOUND ) { // Image Location - grPixel = 0x7fe0; // default value - } else { - grPixel = (guint16) atoi( ImageLocation.c_str() ); - } - if (grPixel == 0xe07f) // sometimes group doesn't follow - grPixel = 0x7fe0; // the supposed processor endianity. see cr172241.dcm - - if (grPixel != 0x7fe0) - // This is a kludge for old dirty Philips imager. - numPixel = 0x1010; - else - numPixel = 0x0010; - */ - - IterHT it = GetHeaderEntrySameNumber(GrPixel,NumPixel); - //std::string icone = GetEntryByNumber(0x0088,0x0200); //icone image sequence - TagKey key = gdcmDictEntry::TranslateToKey(GrPixel,NumPixel); - gdcmHeaderEntry* PixelElement; - - // if (tagHT.count(key) == 1) - if (countGrPixel) - PixelElement = (it.first)->second; - else - PixelElement = (++it.first)->second; - - if (PixelElement) + if (PixelElement) { return PixelElement->GetLength(); - else { + } else { +#ifdef GDCM_DEBUG std::cout << "Big trouble : Pixel Element (" - << std::hex << GrPixel<<","<< NumPixel<< ") NOT found" + << std::hex << GrPixel<<","<< NumPixel<< ") NOT found" << std::endl; +#endif //GDCM_DEBUG return 0; } } @@ -553,45 +351,44 @@ size_t gdcmHeader::GetPixelAreaLength(void) { * \ingroup gdcmHeader * \brief tells us if LUT are used * \warning Right now, 'Segmented xxx Palette Color Lookup Table Data' - * \ are NOT considered as LUT, since nobody knows - * \ how to deal with them - * @return a Boolean + * are NOT considered as LUT, since nobody knows + * how to deal with them + * Please warn me if you know sbdy that *does* know ... jprx + * @return true if LUT Descriptors and LUT Tables were found */ bool gdcmHeader::HasLUT(void) { - // Check the presence of the LUT Descriptors - + // Check the presence of the LUT Descriptors, and LUT Tables // LutDescriptorRed - if ( !GetHeaderEntryByNumber(0x0028,0x1101) ) + if ( !GetDocEntryByNumber(0x0028,0x1101) ) return false; // LutDescriptorGreen - if ( !GetHeaderEntryByNumber(0x0028,0x1102) ) + if ( !GetDocEntryByNumber(0x0028,0x1102) ) return false; // LutDescriptorBlue - if ( !GetHeaderEntryByNumber(0x0028,0x1103) ) - return false; - - // It is not enough : - // we check also - + if ( !GetDocEntryByNumber(0x0028,0x1103) ) + return false; // Red Palette Color Lookup Table Data - if ( !GetHeaderEntryByNumber(0x0028,0x1201) ) + if ( !GetDocEntryByNumber(0x0028,0x1201) ) return false; // Green Palette Color Lookup Table Data - if ( !GetHeaderEntryByNumber(0x0028,0x1202) ) + if ( !GetDocEntryByNumber(0x0028,0x1202) ) return false; // Blue Palette Color Lookup Table Data - if ( !GetHeaderEntryByNumber(0x0028,0x1203) ) - return false; + if ( !GetDocEntryByNumber(0x0028,0x1203) ) + return false; + // FIXME : (0x0028,0x3006) : LUT Data (CTX dependent) + // NOT taken into account, but we don't know how to use it ... return true; } /** * \ingroup gdcmHeader * \brief gets the info from 0028,1101 : Lookup Table Desc-Red - * \ else 0 + * else 0 * @return Lookup Table number of Bits , 0 by default - * \ when (0028,0004),Photometric Interpretation = [PALETTE COLOR ] + * when (0028,0004),Photometric Interpretation = [PALETTE COLOR ] + * @ return bit number of each LUT item */ int gdcmHeader::GetLUTNbits(void) { std::vector tokens; @@ -615,17 +412,17 @@ int gdcmHeader::GetLUTNbits(void) { /** * \ingroup gdcmHeader * \brief builts Red/Green/Blue/Alpha LUT from Header - * \ when (0028,0004),Photometric Interpretation = [PALETTE COLOR ] - * \ and (0028,1101),(0028,1102),(0028,1102) - * \ - xxx Palette Color Lookup Table Descriptor - are found - * \ and (0028,1201),(0028,1202),(0028,1202) - * \ - xxx Palette Color Lookup Table Data - are found + * when (0028,0004),Photometric Interpretation = [PALETTE COLOR ] + * and (0028,1101),(0028,1102),(0028,1102) + * - xxx Palette Color Lookup Table Descriptor - are found + * and (0028,1201),(0028,1202),(0028,1202) + * - xxx Palette Color Lookup Table Data - are found * \warning does NOT deal with : - * \ 0028 1100 Gray Lookup Table Descriptor (Retired) - * \ 0028 1221 Segmented Red Palette Color Lookup Table Data - * \ 0028 1222 Segmented Green Palette Color Lookup Table Data - * \ 0028 1223 Segmented Blue Palette Color Lookup Table Data - * \ no known Dicom reader deals with them :-( + * 0028 1100 Gray Lookup Table Descriptor (Retired) + * 0028 1221 Segmented Red Palette Color Lookup Table Data + * 0028 1222 Segmented Green Palette Color Lookup Table Data + * 0028 1223 Segmented Blue Palette Color Lookup Table Data + * no known Dicom reader deals with them :-( * @return a RGBA Lookup Table */ unsigned char * gdcmHeader::GetLUTRGBA(void) { @@ -634,7 +431,7 @@ unsigned char * gdcmHeader::GetLUTRGBA(void) { // if Photometric Interpretation # PALETTE COLOR, no LUT to be done if (GetEntryByNumber(0x0028,0x0004) != "PALETTE COLOR ") { - return NULL; + return NULL; } int lengthR, debR, nbitsR; int lengthG, debG, nbitsG; @@ -684,16 +481,16 @@ unsigned char * gdcmHeader::GetLUTRGBA(void) { GetEntryVoidAreaByNumber(0x0028,0x1203); if (!lutR || !lutG || !lutB ) { - return NULL; + return NULL; } // forge the 4 * 8 Bits Red/Green/Blue/Alpha LUT - unsigned char *LUTRGBA = (unsigned char *)calloc(1024,1); // 256 * 4 (R, G, B, Alpha) + unsigned char *LUTRGBA = new unsigned char[1024]; // 256 * 4 (R, G, B, Alpha) if (!LUTRGBA) { return NULL; } memset(LUTRGBA, 0, 1024); - // Bits Allocated + // Bits Allocated int nb; std::string str_nb = GetEntryByNumber(0x0028,0x0100); if (str_nb == GDCM_UNFOUND ) { @@ -745,100 +542,122 @@ unsigned char * gdcmHeader::GetLUTRGBA(void) { } /** - * \ingroup gdcmHeader - * \brief gets the info from 0002,0010 : Transfert Syntax - * \ else 1. - * @return Transfert Syntax Name (as oposite to Transfert Syntax UID) + * \brief Accesses the info from 0002,0010 : Transfert Syntax and gdcmTS + * else 1. + * @return The full Transfert Syntax Name (as opposed to Transfert Syntax UID) */ std::string gdcmHeader::GetTransfertSyntaxName(void) { // use the gdcmTS (TS : Transfert Syntax) std::string TransfertSyntax = GetEntryByNumber(0x0002,0x0010); if (TransfertSyntax == GDCM_UNFOUND) { - dbg.Verbose(0, "gdcmHeader::GetTransfertSyntaxName: unfound Transfert Syntax (0002,0010)"); + dbg.Verbose(0, "gdcmHeader::GetTransfertSyntaxName:" + " unfound Transfert Syntax (0002,0010)"); return "Uncompressed ACR-NEMA"; } // we do it only when we need it gdcmTS * ts = gdcmGlobal::GetTS(); std::string tsName=ts->GetValue(TransfertSyntax); - //delete ts; // Seg Fault when deleted ?! + //delete ts; /// \todo Seg Fault when deleted ?! return tsName; } /** - * \ingroup gdcmFile * \brief Sets the Pixel Area size in the Header * --> not-for-rats function - * - * \warning WARNING doit-etre etre publique ? - * TODO : y aurait il un inconvenient à fusionner ces 2 fonctions - * * @param ImageDataSize new Pixel Area Size * warning : nothing else is checked */ void gdcmHeader::SetImageDataSize(size_t ImageDataSize) { std::string content1; char car[20]; - - // Assumes HeaderEntry (GrPixel, NumPixel) is unique ... - // TODO deal with multiplicity (see gdcmData/icone.dcm) + sprintf(car,"%d",ImageDataSize); - gdcmHeaderEntry *a = GetHeaderEntryByNumber(GrPixel, NumPixel); + gdcmDocEntry *a = GetDocEntryByNumber(GrPixel, NumPixel); a->SetLength(ImageDataSize); - + ImageDataSize+=8; sprintf(car,"%d",ImageDataSize); - content1=car; + content1=car; SetEntryByNumber(content1, GrPixel, NumPixel); } -bool gdcmHeader::operator<(gdcmHeader &header) -{ - std::string s1,s2; - - // Patient Name - s1=this->GetEntryByNumber(0x0010,0x0010); - s2=header.GetEntryByNumber(0x0010,0x0010); - if(s1 < s2) - return(true); - else if(s1 > s2) - return(false); - else - { - // Patient ID - s1=this->GetEntryByNumber(0x0010,0x0020); - s2=header.GetEntryByNumber(0x0010,0x0020); - if (s1 < s2) - return(true); - else if (s1 > s2) - return(1); - else - { - // Study Instance UID - s1=this->GetEntryByNumber(0x0020,0x000d); - s2=header.GetEntryByNumber(0x0020,0x000d); - if (s1 < s2) - return(true); - else if(s1 > s2) - return(false); - else - { - // Serie Instance UID - s1=this->GetEntryByNumber(0x0020,0x000e); - s2=header.GetEntryByNumber(0x0020,0x000e); - if (s1 < s2) - return(true); - else if(s1 > s2) - return(false); - } - } - } - return(false); -} - //----------------------------------------------------------------------------- // Protected +/** + * \brief anonymize a Header (removes Patient's personal info) + * (read the code to see which ones ...) + */ +bool gdcmHeader::anonymizeHeader() { + + gdcmDocEntry *patientNameHE = GetDocEntryByNumber (0x0010, 0x0010); + + ReplaceIfExistByNumber (" ",0x0010, 0x2154); // Telephone + ReplaceIfExistByNumber (" ",0x0010, 0x1040); // Adress + ReplaceIfExistByNumber (" ",0x0010, 0x0020); // Patient ID + + if (patientNameHE) { + std::string StudyInstanceUID = GetEntryByNumber (0x0020, 0x000d); + if (StudyInstanceUID !=GDCM_UNFOUND) + ReplaceOrCreateByNumber(StudyInstanceUID, 0x0010, 0x0010); + else + ReplaceOrCreateByNumber(std::string("anonymised"), 0x0010, 0x0010); + } + + // Just for fun :-( + // (if any) remove or replace all the stuff that contains a Date + +//0008 0012 DA ID Instance Creation Date +//0008 0020 DA ID Study Date +//0008 0021 DA ID Series Date +//0008 0022 DA ID Acquisition Date +//0008 0023 DA ID Content Date +//0008 0024 DA ID Overlay Date +//0008 0025 DA ID Curve Date +//0008 002a DT ID Acquisition Datetime +//0018 9074 DT ACQ Frame Acquisition Datetime +//0018 9151 DT ACQ Frame Reference Datetime +//0018 a002 DT ACQ Contribution Date Time +//0020 3403 SH REL Modified Image Date (RET) +//0032 0032 DA SDY Study Verified Date +//0032 0034 DA SDY Study Read Date +//0032 1000 DA SDY Scheduled Study Start Date +//0032 1010 DA SDY Scheduled Study Stop Date +//0032 1040 DA SDY Study Arrival Date +//0032 1050 DA SDY Study Completion Date +//0038 001a DA VIS Scheduled Admission Date +//0038 001c DA VIS Scheduled Discharge Date +//0038 0020 DA VIS Admitting Date +//0038 0030 DA VIS Discharge Date +//0040 0002 DA PRC Scheduled Procedure Step Start Date +//0040 0004 DA PRC Scheduled Procedure Step End Date +//0040 0244 DA PRC Performed Procedure Step Start Date +//0040 0250 DA PRC Performed Procedure Step End Date +//0040 2004 DA PRC Issue Date of Imaging Service Request +//0040 4005 DT PRC Scheduled Procedure Step Start Date and Time +//0040 4011 DT PRC Expected Completion Date and Time +//0040 a030 DT PRC Verification Date Time +//0040 a032 DT PRC Observation Date Time +//0040 a120 DT PRC DateTime +//0040 a121 DA PRC Date +//0040 a13a DT PRC Referenced Datetime +//0070 0082 DA ??? Presentation Creation Date +//0100 0420 DT ??? SOP Autorization Date and Time +//0400 0105 DT ??? Digital Signature DateTime +//2100 0040 DA PJ Creation Date +//3006 0008 DA SSET Structure Set Date +//3008 0024 DA ??? Treatment Control Point Date +//3008 0054 DA ??? First Treatment Date +//3008 0056 DA ??? Most Recent Treatment Date +//3008 0162 DA ??? Safe Position Exit Date +//3008 0166 DA ??? Safe Position Return Date +//3008 0250 DA ??? Treatment Date +//300a 0006 DA RT RT Plan Date +//300a 022c DA RT Air Kerma Rate Reference Date +//300e 0004 DA RT Review Date + return true; +} //----------------------------------------------------------------------------- // Private