X-Git-Url: https://git.creatis.insa-lyon.fr/pubgit/?a=blobdiff_plain;ds=sidebyside;f=tools%2FclitkRelativePositionGenericFilter.txx;h=4114e55cfc1b8d1f238dfb42659ee7e47f2a8901;hb=5bff4d89c8ca42336267c36974e9ceb6fe2ac843;hp=08dc2b5df4a451db7658fe48b1d523e27e054089;hpb=d1dfb9965d4dc32fc4e5f31f39928048ea61f706;p=clitk.git

diff --git a/tools/clitkRelativePositionGenericFilter.txx b/tools/clitkRelativePositionGenericFilter.txx
index 08dc2b5..4114e55 100644
--- a/tools/clitkRelativePositionGenericFilter.txx
+++ b/tools/clitkRelativePositionGenericFilter.txx
@@ -3,7 +3,7 @@
 
   Authors belong to: 
   - University of LYON              http://www.universite-lyon.fr/
-  - Léon Bérard cancer center       http://oncora1.lyon.fnclcc.fr
+  - Léon Bérard cancer center       http://www.centreleonberard.fr
   - CREATIS CNRS laboratory         http://www.creatis.insa-lyon.fr
 
   This software is distributed WITHOUT ANY WARRANTY; without even
@@ -14,7 +14,7 @@
 
   - BSD        See included LICENSE.txt file
   - CeCILL-B   http://www.cecill.info/licences/Licence_CeCILL-B_V1-en.html
-  ======================================================================-====*/
+  ===========================================================================**/
 
 #include "clitkImageCommon.h"
 
@@ -69,6 +69,9 @@ SetOptionsFromArgsInfoToFilter(FilterType * f)
   f->SetVerboseStepFlag(mArgsInfo.verboseStep_flag);
   f->SetWriteStepFlag(mArgsInfo.writeStep_flag);
 
+  // Must be set before AddOrientationTypeString
+  f->SetInverseOrientationFlag(mArgsInfo.inverse_flag);
+  
   for(uint i=0; i<mArgsInfo.orientation_given; i++) {
     f->AddOrientationTypeString(mArgsInfo.orientation_arg[i]);
   }
@@ -77,12 +80,14 @@ SetOptionsFromArgsInfoToFilter(FilterType * f)
     f->IntermediateSpacingFlagOn();
     f->SetIntermediateSpacing(mArgsInfo.spacing_arg);
   }
+  else {
+    f->IntermediateSpacingFlagOff();
+  }
 
   f->SetFuzzyThreshold(mArgsInfo.threshold_arg);
   f->SetRemoveObjectFlag(!mArgsInfo.doNotRemoveObject_flag);
   f->SetAutoCropFlag(!mArgsInfo.noAutoCrop_flag);
   f->SetCombineWithOrFlag(mArgsInfo.combineWithOr_flag);
-  f->SetInverseOrientationFlag(mArgsInfo.inverse_flag);
 }
 
 //--------------------------------------------------------------------
@@ -112,7 +117,13 @@ UpdateWithInputImageType()
 
     // Set options only for SliceBySliceRelativePositionFilter
     filter->SetDirection(mArgsInfo.direction_arg);
-    filter->SetUniqueConnectedComponentBySlice(mArgsInfo.uniqueCCL_flag);
+    filter->SetUniqueConnectedComponentBySliceFlag(mArgsInfo.uniqueCCL_flag);
+    if (mArgsInfo.uniqueObjectCCL_flag) {
+      filter->UseTheLargestObjectCCLFlagOn();
+    }
+    else {
+      filter->UseTheLargestObjectCCLFlagOff();
+    }
     
     // Go !
     filter->Update();