X-Git-Url: https://git.creatis.insa-lyon.fr/pubgit/?a=blobdiff_plain;ds=sidebyside;f=vv%2Fscripts%2Fcreate_mhd_4D.sh;h=238e26aa9b4e68f649fc13af46003d098ced77c3;hb=ff1d5b8af965e75ecdbc1b0cbff0dad6f3b3c511;hp=8eac7828fc0799d3e4940104e4a95a6f25c61d2e;hpb=931a42358442f4ee4f314613c991c838d4b4e3b7;p=clitk.git

diff --git a/vv/scripts/create_mhd_4D.sh b/vv/scripts/create_mhd_4D.sh
index 8eac782..238e26a 100755
--- a/vv/scripts/create_mhd_4D.sh
+++ b/vv/scripts/create_mhd_4D.sh
@@ -1,16 +1,22 @@
 #!/bin/sh
 
-###############################################
-# create_mhd_4D 	argument : repertoire #
-###############################################
+
+#####################################################################
+# create_mhd_4D 	argument : repertoire nom_fichier_de_sortie #
+#####################################################################
 if [ $# -lt 1 ]
 then
-    echo "Usage: create_mhd_4D directory"
+    echo "Usage: create_mhd_4D.sh directory output_file_name(without path)"
     exit 1
 fi
 
 cd $1
-nbph=`ls -l *0.mhd | wc -l`
+nbph=`find . -iname "*0.mhd" | wc -l`
+if [ $nbph = 0 ]
+then
+    echo "Error: no phase found"
+    exit 1
+fi
 orig=`ls -1 *0.mhd | head -n 1`
 
 cat $orig | sed "s/NDims = .*/NDims = 4/
@@ -20,7 +26,7 @@ cat $orig | sed "s/NDims = .*/NDims = 4/
 		 s/AnatomicalOrientation = .*/AnatomicalOrientation = ????/
 		 /ElementSpacing/ s/.*/& 1/
 		 /DimSize/ s/.*/& $nbph/
-		 s/ElementDataFile = .*/ElementDataFile = LIST/" > CT_4D.mhd
+		 s/ElementDataFile = .*/ElementDataFile = LIST/" > $2
 
-ls -1 *0.raw >> CT_4D.mhd
+ls -1 *0.raw >> $2
 cd ..