X-Git-Url: https://git.creatis.insa-lyon.fr/pubgit/?a=blobdiff_plain;f=CMakeLists.txt;h=fd3ea26bc9571c0e971224ea779a229663d5ad5a;hb=54de2903ffa1d7f444d2a38609de58f8f2ab0d2d;hp=a44f67317d05d629a798ac549ae80511cb13488e;hpb=f212801604d217111cab7c0557533f114a87ca56;p=clitk.git

diff --git a/CMakeLists.txt b/CMakeLists.txt
index a44f673..fd3ea26 100644
--- a/CMakeLists.txt
+++ b/CMakeLists.txt
@@ -1,60 +1,70 @@
 #=========================================================
 # CLITK = Command Line ITK
-cmake_minimum_required(VERSION 2.4)
-cmake_policy(VERSION 2.4)
+cmake_minimum_required(VERSION 2.8)
+cmake_policy(VERSION 2.8)
 if(COMMAND cmake_policy)
     cmake_policy(SET CMP0003 NEW)
 endif(COMMAND cmake_policy)
 PROJECT(clitk)
 #=========================================================
-#IF(CMAKE_COMPILER_IS_GNUCXX)
-#  SET(CMAKE_CXX_FLAGS "${CMAKE_CXX_FLAGS} -march=native")
-#  SET(CMAKE_CXX_FLAGS "${CMAKE_CXX_FLAGS} ")
-#ENDIF(CMAKE_COMPILER_IS_GNUCXX)
-IF(MSVC)
-  ADD_DEFINITIONS(-D_CRT_SECURE_NO_WARNINGS -D_CRT_NONSTDC_NO_DEPRECATE -D_SCL_SECURE_NO_WARNINGS)
-ENDIF(MSVC)
+
+#=========================================================
+INCLUDE(cmake/common.cmake)
+#=========================================================
+
+#=========================================================
+#Support for the CTest dashboard testing system
+OPTION(BUILD_TESTING "Build the testing tree" OFF)
+IF (BUILD_TESTING)
+  OPTION(CLITK_BUILD_TESTING "Test ITK" ON)
+  INCLUDE(CTest)
+ENDIF(BUILD_TESTING)
+#=========================================================
+
 #=========================================================
 # Find ITK (required)
 FIND_PACKAGE(ITK)
 IF(ITK_FOUND)
-  INCLUDE(${ITK_USE_FILE})
-  LINK_LIBRARIES(ITKBasicFilters)
+  INCLUDE("${ITK_USE_FILE}")
 ELSE(ITK_FOUND)
-  MESSAGE(FATAL_ERROR
-          "Cannot build without ITK.  Please set ITK_DIR.")
+  MESSAGE(FATAL_ERROR "Cannot build without ITK.  Please set ITK_DIR.")
 ENDIF(ITK_FOUND)
+#=========================================================
 
 #=========================================================
-IF(CLITK_BUILD_VV)
-    FIND_PACKAGE(VTK)
-    IF(VTK_FOUND)
-      INCLUDE(${VTK_USE_FILE})
-      LINK_LIBRARIES (
-        vtkCommon
-        vtkRendering
-        vtkIO
-        vtkFiltering
-        vtkGraphics
-        vtkWidgets
-        vtkImaging
-        )
-    ELSE(VTK_FOUND)
-      MESSAGE(FATAL_ERROR
-        "Please set VTK_DIR.")
-    ENDIF(VTK_FOUND)
-ENDIF(CLITK_BUILD_VV)
+# Find VTK (required)
+FIND_PACKAGE(VTK REQUIRED)
+IF(VTK_FOUND)
+  INCLUDE("${VTK_USE_FILE}")
+ELSE(VTK_FOUND)
+  MESSAGE(FATAL_ERROR "Please set VTK_DIR.")
+ENDIF(VTK_FOUND)
+#=========================================================
 
 #=========================================================
-# Find gengetopt
-FIND_PATH(CLITK_GENGETOPT gengetopt)
-IF (CLITK_GENGETOPT STREQUAL "CLITK_GENGETOPT-NOTFOUND")
-  MESSAGE("gengetopt not found, please install it (see http://www.gnu.org/software/gengetopt/gengetopt.html)")
-ENDIF (CLITK_GENGETOPT STREQUAL "CLITK_GENGETOPT-NOTFOUND")
+# Find gengetopt, will create a target exe if not found
+SET(CMAKE_MODULE_PATH "${PROJECT_SOURCE_DIR}/cmake" ${CMAKE_MODULE_PATH})
+FIND_PACKAGE(Gengetopt)
 #=========================================================
 
 #=========================================================
-INCLUDE(cmake/common.cmake)
+# Find libstatgrab is installed, add clitkMemoryUsage.cxx in the library
+FIND_LIBRARY(LIBSTATGRAB NAMES statgrab PATHS)
+IF (${LIBSTATGRAB} MATCHES "LIBSTATGRAB-NOTFOUND")
+#  MESSAGE("Install libstatgrab (http://www.i-scream.org/libstatgrab/) for memory usage information")
+  SET(CLITK_MEMORY_INFO OFF)
+ELSE (${LIBSTATGRAB} MATCHES "LIBSTATGRAB-NOTFOUND")
+  SET(CLITK_MEMORY_INFO ON)
+ENDIF (${LIBSTATGRAB} MATCHES "LIBSTATGRAB-NOTFOUND")  
+#=========================================================
+
+#=========================================================
+# If the user choose to build documentation, then search for Doxygen executables.
+OPTION(BUILD_DOXYGEN "Build Doxygen Documentation" OFF)
+IF(BUILD_DOXYGEN)
+  FIND_PACKAGE(Doxygen)
+  ADD_SUBDIRECTORY(Doxygen)
+ENDIF(BUILD_DOXYGEN)
 #=========================================================
 
 #=========================================================
@@ -66,28 +76,56 @@ ENDIF(PROJECT_BINARY_DIR STREQUAL ${PROJECT_SOURCE_DIR})
 #=========================================================
 
 #=========================================================
-OPTION(CLITK_BUILD_VV "Build vv the 4D visualizer (requires VTK and QT)" ON)
-OPTION(CLITK_BUILD_TOOLS "Build command-line tools" OFF)
-OPTION(CLITK_EXPERIMENTAL "Enable experimental software and features" OFF)
-OPTION(CLITK_BUILD_SEGMENTATION "Build segmentation tools" OFF)
+# Remove some MS Visual c++ flags
+IF(MSVC)
+  ADD_DEFINITIONS(-D_CRT_SECURE_NO_WARNINGS -D_CRT_NONSTDC_NO_DEPRECATE -D_SCL_SECURE_NO_WARNINGS)
+ENDIF(MSVC)
 #=========================================================
 
-include_directories(itk filters ${PROJECT_BINARY_DIR})
-
 #=========================================================
-add_subdirectory(common)
-add_subdirectory(filters)
+INCLUDE_DIRECTORIES(itk filters segmentation registration tools ${PROJECT_BINARY_DIR})
+
+# Select what is compiled
+ADD_SUBDIRECTORY(common)
+ADD_SUBDIRECTORY(tools)
+ADD_SUBDIRECTORY(segmentation)
+ADD_SUBDIRECTORY(registration)
 
+
+# Compilation options
+OPTION(CLITK_EXPERIMENTAL "Enable experimental software and features" OFF)
+OPTION(CLITK_BUILD_TOOLS "Build command-line tools" OFF)
+OPTION(CLITK_BUILD_SEGMENTATION "Build command-line segmentation tools" OFF)
+OPTION(CLITK_BUILD_REGISTRATION "Build command-line registration tools" OFF)
+
+OPTION(CLITK_BUILD_VV "Build vv the 4D visualizer (requires VTK and QT)" ON)
 IF (CLITK_BUILD_VV)
-  add_subdirectory(vv)
+  ADD_SUBDIRECTORY(vv)
 ENDIF(CLITK_BUILD_VV)
 
-IF (CLITK_BUILD_TOOLS)
-  add_subdirectory(tools)
-ENDIF(CLITK_BUILD_TOOLS)
 
-IF (CLITK_BUILD_SEGMENTATION)
-    add_subdirectory(segmentation)
-ENDIF (CLITK_BUILD_SEGMENTATION)
+#=========================================================
+# Build test when vv has been compiled
+IF(BUILD_TESTING)
+  ADD_SUBDIRECTORY(tests)
+ENDIF(BUILD_TESTING)
 
 #=========================================================
+# Install scripts when running make install
+SET(SCRIPTS 
+  scripts/calculate_motion_amplitude.sh
+  scripts/midp_common.sh
+  scripts/registration.sh
+  scripts/create_midP.sh
+  scripts/create_midP-2.0.sh        
+  scripts/create_mhd_4D.sh          
+  scripts/create_mhd_4D_pattern.sh  
+  scripts/create_midP_masks.sh  
+  scripts/create_midP_masks-2.0.sh  
+  scripts/pts_to_landmarks.sh
+  scripts/create_mhd_3D.sh
+  scripts/dicom_info.sh
+)
+
+INSTALL (FILES ${SCRIPTS} DESTINATION bin PERMISSIONS OWNER_READ OWNER_WRITE OWNER_EXECUTE GROUP_EXECUTE WORLD_EXECUTE)
+