X-Git-Url: https://git.creatis.insa-lyon.fr/pubgit/?a=blobdiff_plain;f=Dicts%2FCMakeLists.txt;h=20e988a388e5556d7b4a76a3fa3bbd9044fd936a;hb=04f3bbda36168ed865e04de8b94d2c60206f962a;hp=c45f284a5839d41830fa4faf4a8423f2bd3478be;hpb=8dc4fc4a660215b85d92ae1f64730eac9226a5b2;p=gdcm.git diff --git a/Dicts/CMakeLists.txt b/Dicts/CMakeLists.txt index c45f284a..20e988a3 100644 --- a/Dicts/CMakeLists.txt +++ b/Dicts/CMakeLists.txt @@ -2,43 +2,134 @@ # DICOM dictionary stuff -INSTALL_FILES(${GDCM_DATA_DIR} FILES - dicomV3.dic - dicomVR.dic - dicomTS.dic - DicomDir.dic +INSTALL_FILES(${GDCM_DATA_DIR} .dic + dicomV3 + dicomVR + dicomTS + DicomDir + DictGroupName ) # Nice trick to avoid creating a .h file each time we compile gdcm # Since CONFIGURE_FILE do a 'copy if different' # We have to write the file here since is contains 'DICOM_DICTIONARY' # Which is a variable afterward... -#FILE(WRITE "/tmp/output.h.in" "@DICOM_DICTIONARY@" ) -# Following code contributing by Andy Cedilnik -SET(INFILE "dicomV3.dic") +# Following code contributing by Andy Cedilnik (Kitware) +FILE(READ "dicomV3.dic" ENT) +STRING(REGEX REPLACE "\r?\n" ";" ENT "${ENT}") +SET(DICOM_DATA_DICTIONARY "") -FILE(READ "${INFILE}" ENT) +FOREACH(line ${ENT}) + STRING(REGEX REPLACE + "^([0-9a-f][0-9a-f][0-9a-f][0-9a-f]) ([0-9a-f][0-9a-f][0-9a-f][0-9a-f]) ([A-Z]+) ([1-9n-]+) (.*)$" + " {0x\\1, 0x\\2, \"\\3\" , \"\\4\" , \"\\5\"}, " nline "${line}") + SET(DICOM_DATA_DICTIONARY "${DICOM_DATA_DICTIONARY}\n${nline}") +ENDFOREACH(line) -STRING(REGEX REPLACE "\n" ";" ENT "${ENT}") -SET(DICOM_DICTIONARY - "void FillDefault()\n{" -) +SET(DICOM_DATA_DICTIONARY "${DICOM_DATA_DICTIONARY} \n {0,0,0,0,0}") -FOREACH(line ${ENT}) +#----------------------------------------------------------------------------- +# ... for DicomTS file +FILE(READ "dicomTS.dic" ENT_TS) +STRING(REGEX REPLACE "\r?\n" ";" ENT_TS "${ENT_TS}") +SET(DICOM_TS_DICTIONARY "") + +FOREACH(line ${ENT_TS}) STRING(REGEX REPLACE -# "^([0-9a-f][0-9a-f][0-9a-f][0-9a-f]) ([0-9a-f][0-9a-f][0-9a-f][0-9a-f]) ([A-Z]+) ([A-Z]+) (.*)([ \(RET\)]*)$" - "^([0-9a-f][0-9a-f][0-9a-f][0-9a-f]) ([0-9a-f][0-9a-f][0-9a-f][0-9a-f]) ([A-Z]+) ([A-Z?]+) (.*)$" -# " { \\1, \\2, \"\\3\" , \"\\4\" , \"\\5\", \"\\6\"}," nline "${line}") -# " { \\1, \\2, \"\\3\" , \"\\4\" , \"\\5\"}," nline "${line}") - " AddNewEntry( DictEntry ( 0x\\1, 0x\\2, \"\\3\" , \"\\4\" , \"\\5\"));" nline "${line}") - SET(DICOM_DICTIONARY "${DICOM_DICTIONARY}\n${nline}") + "^([0-9.]+) +(.*)$" + " ts[\"\\1\"] = \"\\2\"; " nline "${line}") + SET(DICOM_TS_DICTIONARY "${DICOM_TS_DICTIONARY}\n${nline}") ENDFOREACH(line) -SET(DICOM_DICTIONARY "${DICOM_DICTIONARY} \n }") +#----------------------------------------------------------------------------- +# ... for DicomVR file +FILE(READ "dicomVR.dic" ENT_VR) +STRING(REGEX REPLACE ";" "/" ENT_VR "${ENT_VR}") # CMake doesn't like ';' +STRING(REGEX REPLACE "\r?\n" ";" ENT_VR "${ENT_VR}") +SET(DICOM_VR_DICTIONARY "") + +FOREACH(line ${ENT_VR}) + STRING(REGEX REPLACE + "^([A-Z][A-Z]) (.*)/ +//.*$" + " vr[\"\\1\"] = \"\\2\"; " nline "${line}") + SET(DICOM_VR_DICTIONARY "${DICOM_VR_DICTIONARY}\n${nline}") +ENDFOREACH(line) + +#----------------------------------------------------------------------------- +# ... for DictGroupName file +FILE(READ "DictGroupName.dic" ENT_TS) +STRING(REGEX REPLACE "\r?\n" ";" ENT_TS "${ENT_TS}") +SET(DICT_GROUP_NAME_DICTIONARY "") -# See above -CONFIGURE_FILE("${CMAKE_CURRENT_SOURCE_DIR}/gdcmDefaultDict.h.in" "${GDCM_BINARY_DIR}/gdcmDefaultDict.h") +FOREACH(line ${ENT_TS}) + STRING(REGEX REPLACE + "^([0-9a-f]+) +(.*)$" + " groupName[0x\\1] = \\2; " nline "${line}") + SET(DICT_GROUP_NAME_DICTIONARY "${DICT_GROUP_NAME_DICTIONARY}\n${nline}") +ENDFOREACH(line) + +#----------------------------------------------------------------------------- +# ... for DicomDir file +FILE(READ "DicomDir.dic" ENT_DIR) +STRING(REGEX REPLACE "\\\\" "\\\\\\\\" ENT_DIR "${ENT_DIR}") +STRING(REGEX REPLACE ";" "/" ENT_DIR "${ENT_DIR}") # CMake doesn't like ';' +STRING(REGEX REPLACE "\r?\n" ";" ENT_DIR "${ENT_DIR}") +SET(DICOM_DIR_DICTIONARY "") + +FOREACH(line ${ENT_DIR}) + STRING(REGEX REPLACE + "^(metaElem|patientElem|studyElem|serieElem|imageElem) *([a-f0-9]+) ([a-f0-9]+) [\"](.*)[\"](.*)$" + " {\"\\1\" , 0x\\2 , 0x\\3 , \"\\4\"}, \\5" nline "${line}") + SET(DICOM_DIR_DICTIONARY "${DICOM_DIR_DICTIONARY}\n${nline}") +ENDFOREACH(line) + +#----------------------------------------------------------------------------- +# ... Set the dictionnary +SET(DICOM_DIR_DICTIONARY "${DICOM_DIR_DICTIONARY} \n {0,0,0,0}") + +FOREACH(file dicomV3.dic dicomTS.dic dicomVR.dic DicomDir.dic DictGroupName.dic) + CONFIGURE_FILE("${GDCM_SOURCE_DIR}/Dicts/${file}" + "${GDCM_BINARY_DIR}/Dicts/${file}.out") +ENDFOREACH(file) +CONFIGURE_FILE("${GDCM_SOURCE_DIR}/src/gdcmDefaultDicts.cxx.in" "${GDCM_BINARY_DIR}/src/gdcmDefaultDicts.cxx" IMMEDIATE) + + +#FILE(READ "dicomV3VM2004.dic" ENT2) +#STRING(REGEX REPLACE "\n" ";" ENT2 "${ENT2}") +#SET(DICOM_DICTIONARY2 "") +# +#FOREACH(line ${ENT2}) +# STRING(REGEX REPLACE +## "^([0-9a-f][0-9a-f][0-9a-f][0-9a-f]) ([0-9a-f][0-9a-f][0-9a-f][0-9a-f]) ([A-Z]+) ([A-Z]+) (.*)([ \(RET\)]*)$" +# "^([0-9a-f][0-9a-f][0-9a-f][0-9a-f]) ([0-9a-f][0-9a-f][0-9a-f][0-9a-f]) ([A-Z]+) ([0-9]|[1]-[0-9n]|[2]-[2][n]|[3]-[3][n]) (.*)$" +## " { \\1, \\2, \"\\3\" , \"\\4\" , \"\\5\", \"\\6\"}," nline "${line}") +# " { \\1, \\2, \"\\3\" , \"\\4\" , \"\\5\"}," nline "${line}") +# SET(DICOM_DICTIONARY2 "${DICOM_DICTIONARY2}\n${nline}") +#ENDFOREACH(line) +# +# +# +##FILE(READ "04_06PU.txt" ENT3) +#FILE(READ "extract.txt" ENT3) +# +#STRING(REGEX REPLACE "\n" ";" ENT3 "${ENT3}") +#SET(DICOM_DICTIONARY3 "") +# +#FOREACH(line ${ENT3}) +# STRING(REGEX REPLACE +## "^[(]([0-9a-fA-F]+),([0-9a-fA-F]+)[)] (.*) ([A-ZA-Z]*) ([[0-3][-][1-3n]*|[1-]*[0-9]+]*) ?([RET|Retired]*)$" +# "^[(]([0-9a-fA-F]+),([0-9a-fA-F]+)[)] +(.*) +([A-ZA-Z [[0-3][-][1-3n]*|[1-]*[0-9]+]]*)([ RET]*)$" +# " { \\1 , \\2, \\3, \\4, \\5 }," nline "${line}") +# STRING(COMPARE NOTEQUAL "${line}" "${nline}" add) +# IF(add) +# #SET(DICOM_DICTIONARY3 "${DICOM_DICTIONARY3}\n${nline}") +# MESSAGE("${nline}") +# ELSE(add) +# MESSAGE("WRONG:${nline}") +# ENDIF(add) +#ENDFOREACH(line) -#MESSAGE("${DICOM_DICTIONARY}") +# Txt generation: +# ~/Software/xpdf-3.00-linux/pdftotext -f 9 -l 81 -raw -nopgbrk 04_06PU.PDF 04_06PU-3.txt