X-Git-Url: https://git.creatis.insa-lyon.fr/pubgit/?a=blobdiff_plain;f=Example%2FAnonymizeNoLoad.cxx;h=dc7eadc9aea8e294e038fab4fbffbecc6c170845;hb=175f7eaa4d1f56100622951645c6d677b351a5ba;hp=340438b409b823ec6b1771fd12561eff06d38dc2;hpb=50367e2a53b386b4afd36d1240f17d1ad3d89ba8;p=gdcm.git diff --git a/Example/AnonymizeNoLoad.cxx b/Example/AnonymizeNoLoad.cxx index 340438b4..dc7eadc9 100644 --- a/Example/AnonymizeNoLoad.cxx +++ b/Example/AnonymizeNoLoad.cxx @@ -3,8 +3,8 @@ Program: gdcm Module: $RCSfile: AnonymizeNoLoad.cxx,v $ Language: C++ - Date: $Date: 2005/06/07 13:10:57 $ - Version: $Revision: 1.1 $ + Date: $Date: 2007/06/06 13:03:57 $ + Version: $Revision: 1.21 $ Copyright (c) CREATIS (Centre de Recherche et d'Applications en Traitement de l'Image). All rights reserved. See Doc/License.txt or @@ -19,6 +19,7 @@ #include "gdcmFileHelper.h" #include "gdcmCommon.h" #include "gdcmDebug.h" +#include "gdcmDirList.h" #include "gdcmArgMgr.h" @@ -27,18 +28,29 @@ int main(int argc, char *argv[]) { START_USAGE(usage) - " \n AnonymizeNoLOad :\n", - " Anonymize a gdcm-readable Dicom image even if pixels aren't gdcm readable", - " Warning : Warning : the image is overwritten", - " to preserve image integrity, use a copy.", - " usage: AnonymizeNoLoad filein=inputFileName fileout=[debug] ", - " debug : user wants to run the program in 'debug mode' ", + "\n AnonymizeNoLoad :\n ", + "Anonymize a gdcm-parsable Dicom image even if pixels aren't gdcm readable ", + " Warning : the image is OVERWRITTEN ", + " to preserve image integrity, use a copy. ", + "usage: AnonymizeNoLoad {filein=inputFileName|dirin=inputDirectoryName} ", + " [rubout=listOfElementsToRubOut] ", + " [ { [noshadowseq] | [noshadow][noseq] } ] [debug] ", + " inputFileName : Name of the (single) file user wants to anonymize ", + " inputDirectoryName : user wants to anonymize *all* the files ", + " within the (single Patient!) directory ", + " listOfElementsToRubOut : group-elem,g2-e2,... (in hexa, no space) ", + " of extra Elements to rub out ", + " noshadowseq: user doesn't want to load Private Sequences ", + " noshadow : user doesn't want to load Private groups (odd number) ", + " noseq : user doesn't want to load Sequences ", + " debug : developper wants to run the program in 'debug mode' ", FINISH_USAGE - // ----- Initialize Arguments Manager ------ - gdcm::ArgMgr *am = new gdcm::ArgMgr(argc, argv); + // ----- Initialize Arguments Manager ------ - if (am->ArgMgrDefined("usage")) + GDCM_NAME_SPACE::ArgMgr *am = new GDCM_NAME_SPACE::ArgMgr(argc, argv); + + if (am->ArgMgrDefined("usage") || argc == 1) { am->ArgMgrUsage(usage); // Display 'usage' delete am; @@ -46,94 +58,193 @@ int main(int argc, char *argv[]) } if (am->ArgMgrDefined("debug")) - gdcm::Debug::DebugOn(); - - char *fileName = am->ArgMgrWantString("filein",usage); + GDCM_NAME_SPACE::Debug::DebugOn(); - int loadMode; - if ( am->ArgMgrDefined("noshadow") && am->ArgMgrDefined("noseq") ) - loadMode = NO_SEQ | NO_SHADOW; - else if ( am->ArgMgrDefined("noshadow") ) - loadMode = NO_SHADOW; - else if ( am->ArgMgrDefined("noseq") ) - loadMode = NO_SEQ; - else - loadMode = 0; + const char *fileName = am->ArgMgrGetString("filein"); + const char *dirName = am->ArgMgrGetString("dirin"); - delete am; // we don't need Argument Manager any longer + if ( (fileName == 0 && dirName == 0) + || + (fileName != 0 && dirName != 0) ) + { + std::cout <ArgMgrDefined("noshadowseq") ) + loadMode |= GDCM_NAME_SPACE::LD_NOSHADOWSEQ; + else + { + if ( am->ArgMgrDefined("noshadow") ) + loadMode |= GDCM_NAME_SPACE::LD_NOSHADOW; + if ( am->ArgMgrDefined("noseq") ) + loadMode |= GDCM_NAME_SPACE::LD_NOSEQ; + } - // ============================================================ - // Parse the input file. - // ============================================================ + int rubOutNb; + uint16_t *elemsToRubOut = am->ArgMgrGetXInt16Enum("rubout", &rubOutNb); - gdcm::File *f1; - f1 = new gdcm::File( ); - f1->SetLoadMode(loadMode); - int res = f1->Load(fileName); + /* if unused Param we give up */ + if ( am->ArgMgrPrintUnusedLabels() ) + { + am->ArgMgrUsage(usage); + delete am; + return 0; + } + + delete am; // ------ we don't need Arguments Manager any longer ------ - // gdcm::File::IsReadable() is no usable here, because we deal with - // any kind of gdcm::Readable *document* - // not only gdcm::File (as opposed to gdcm::DicomDir) - if ( !res ) + GDCM_NAME_SPACE::File *f; + if ( fileName != 0 ) // ====== Deal with a single file ====== { - std::cout <SetLoadMode(loadMode); + f->SetFileName( fileName ); + + // GDCM_NAME_SPACE::File::IsReadable() is no usable here, because we deal with + // any kind of GDCM_NAME_SPACE::Readable *document* + // not only GDCM_NAME_SPACE::File (as opposed to GDCM_NAME_SPACE::DicomDir) + if ( !f->Load() ) + { + std::cout <Delete(); + return 1; + } + std::cout << fileName << " is readable " << std::endl; + + // + // No need to load the pixels in memory. + // File will be overwritten + // + + // + // Choose the fields to anonymize. + // + + // Institution name + f->AddAnonymizeElement( 0x0008, 0x0080, "gdcm-Xanadoo Hospital" ); + // Patient's name + f->AddAnonymizeElement( 0x0010, 0x0010, "gdcm^Fantomas" ); + // Patient's ID + f->AddAnonymizeElement( 0x0010, 0x0020,"1515" ); + // Patient's Birthdate + f->AddAnonymizeElement( 0x0010, 0x0030,"11111111" ); + // Patient's Adress + f->AddAnonymizeElement( 0x0010, 0x1040,"gdcm at Sing-sing.org" ); + // Patient's Mother's Birth Name + f->AddAnonymizeElement( 0x0010, 0x1060,"gdcm^Vampirella" ); + // Study Instance UID + f->AddAnonymizeElement( 0x0020, 0x000d, "9.99.999.9999" ); + // Telephone + f->AddAnonymizeElement(0x0010, 0x2154, "3615" ); + + for (int ri=0; riAddAnonymizeElement((uint32_t)elemsToRubOut[2*ri], + (uint32_t)elemsToRubOut[2*ri+1],"*" ); + } + + // Aware use will add new fields here + + // + // Overwrite the file + // + + std::cout <<"Let's AnonymizeNoLoad " << std::endl; + + // The GDCM_NAME_SPACE::File remains untouched in memory + + f->AnonymizeNoLoad(); + + // No need to write the file : modif were done on disc ! + // ( The Dicom file is overwritten ) + std::cout <<"End AnonymizeNoLoad" << std::endl; + + // + // Remove the Anonymize list + // + f->ClearAnonymizeList(); + + f->Delete(); + return 0; + } - std::cout << fileName << " is readable " << std::endl; - - // ============================================================ - // No need to load the pixels in memory. - // File will be overwritten - // ============================================================ - - - // ============================================================ - // Choose the fields to anonymize. - // ============================================================ - // Institution name - f1->AddAnonymizeElement( 0x0008, 0x0080, "Xanadoo" ); - // Patient's name - f1->AddAnonymizeElement( 0x0010, 0x0010, "Fantomas" ); - // Patient's ID - f1->AddAnonymizeElement( 0x0010, 0x0020,"1515" ); - // Patient's Birthdate - f1->AddAnonymizeElement( 0x0010, 0x0030,"11.11.1111" ); - // Patient's Adress - f1->AddAnonymizeElement( 0x0010, 0x1040,"Sing-sing" ); - // Patient's Mother's Birth Name - f1->AddAnonymizeElement( 0x0010, 0x1060,"Vampirella" ); - // Study Instance UID - f1->AddAnonymizeElement( 0x0020, 0x000d, "9.99.999.9999" ); - // Telephone - f1->AddAnonymizeElement(0x0010, 0x2154, "3615" ); - - // Aware use will add new fields here - - // ============================================================ - // Overwrite the file - // ============================================================ - - std::cout <<"Let's AnonymizeNoLoad " << std::endl;; - - // The gdcm::File remains untouched in memory - - f1->AnonymizeNoLoad(); - - // No need to write the File : modif were done on disc ! - // File was overwritten ... - - std::cout <<"End AnonymizeNoLoad" << std::endl; - - // ============================================================ - // Remove the Anonymize list - // ============================================================ - f1->ClearAnonymizeList(); + else // ====== Deal with a (single Patient) Directory ====== + { + std::cout << "dirName [" << dirName << "]" << std::endl; + GDCM_NAME_SPACE::DirList dirList(dirName,1); // gets recursively the file list + GDCM_NAME_SPACE::DirListType fileList = dirList.GetFilenames(); + for( GDCM_NAME_SPACE::DirListType::iterator it = fileList.begin(); + it != fileList.end(); + ++it ) + { + f = GDCM_NAME_SPACE::File::New( ); + f->SetLoadMode(loadMode); + f->SetFileName( it->c_str() ); + + if ( !f->Load() ) + { + f->Delete(); + continue; + } + // + // Choose the fields to anonymize. + // + + // Institution name + f->AddAnonymizeElement( 0x0008, 0x0080, "gdcm-Xanadoo Hospital" ); + // Patient's name + f->AddAnonymizeElement( 0x0010, 0x0010, "gdcm^Fantomas" ); + // Patient's ID + f->AddAnonymizeElement( 0x0010, 0x0020,"1515" ); + // Patient's Birthdate + f->AddAnonymizeElement( 0x0010, 0x0030,"11111111" ); + // Patient's Adress + f->AddAnonymizeElement( 0x0010, 0x1040,"gdcm at Sing-sing.org" ); + // Patient's Mother's Birth Name + f->AddAnonymizeElement( 0x0010, 0x1060,"gdcm^Vampirella" ); + // Study Instance UID + // we may not brutaly overwrite it + //f->AddAnonymizeElement( 0x0020, 0x000d, "9.99.999.9999" ); + // Telephone + f->AddAnonymizeElement(0x0010, 0x2154, "3615" ); + + // deal with user defined Elements set + + for (int ri=0; riAddAnonymizeElement((uint32_t)elemsToRubOut[2*ri], + (uint32_t)elemsToRubOut[2*ri+1],"*" ); + } + std::cout <<"Let's AnonymizeNoLoad " << it->c_str() << std::endl; + + // The GDCM_NAME_SPACE::File remains untouched in memory + // The Dicom file is overwritten on disc + + f->AnonymizeNoLoad(); + + // + // Remove the Anonymize list + // + + f->ClearAnonymizeList(); - delete f1; + f->Delete(); + } + } return 0; }