X-Git-Url: https://git.creatis.insa-lyon.fr/pubgit/?a=blobdiff_plain;f=Example%2FPrintFile.cxx;h=2ed087c95aae4f3d5b8a75a5f59453f388b53881;hb=e7a642c06e4cdcfdbaf024090754283ccc564408;hp=4225dc9024b45db6a23ee586a3c99df0a190d33e;hpb=8fd45dc6d321d1419854dc0e4fa6a37d6826b655;p=gdcm.git diff --git a/Example/PrintFile.cxx b/Example/PrintFile.cxx index 4225dc90..2ed087c9 100644 --- a/Example/PrintFile.cxx +++ b/Example/PrintFile.cxx @@ -3,8 +3,8 @@ Program: gdcm Module: $RCSfile: PrintFile.cxx,v $ Language: C++ - Date: $Date: 2007/05/23 14:18:04 $ - Version: $Revision: 1.84 $ + Date: $Date: 2010/09/01 14:41:48 $ + Version: $Revision: 1.94 $ Copyright (c) CREATIS (Centre de Recherche et d'Applications en Traitement de l'Image). All rights reserved. See Doc/License.txt or @@ -30,7 +30,7 @@ #include "gdcmOrientation.h" #include -// TODO : code factorization, for 'single file' an 'whole directory' processing +/// \todo : code factorization, for 'single file' an 'whole directory' processing void ShowLutData(GDCM_NAME_SPACE::File *f); @@ -125,11 +125,14 @@ int main(int argc, char *argv[]) " \n PrintFile : \n ", " Display the header of a ACR-NEMA/PAPYRUS/DICOM File ", " usage: PrintFile {filein=inputFileName|dirin=inputDirectoryName}[level=n]", - " [forceload=listOfElementsToForceLoad] ", + " [forceload=listOfElementsToForceLoad] [rec] [noex] ", " [4DLoc= ][dict= privateDirectory] ", - " [ { [noshadowseq] | [noshadow][noseq] } ] ", + " [ { [noshadowseq] | [noshadow][noseq] } ] [load] ", " [debug] [warning] ", " level = 0,1,2 : depending on the amount of details user wants to see", + " rec : user wants to parse recursively the directory ", + " load : user wants to load the pixels, as well (to see warning info) ", + " noex : user doesn't want extra 'user friendly' info ", " 4DLoc: group-elem(in hexa, no space) of the DataEntry holdind 4thDim", " listOfElementsToForceLoad : group-elem,g2-e2,... (in hexa, no space)", " of Elements to load whatever their length ", @@ -164,8 +167,11 @@ int main(int argc, char *argv[]) am->ArgMgrUsage(usage); // Display 'usage' delete am; return 1; - } - + } + + bool noex = ( 0 != am->ArgMgrDefined("noex") ); + bool rec = ( 0 != am->ArgMgrDefined("rec") ); + if (am->ArgMgrDefined("debug")) GDCM_NAME_SPACE::Debug::DebugOn(); @@ -188,8 +194,8 @@ int main(int argc, char *argv[]) int forceLoadNb; uint16_t *elemsToForceLoad = am->ArgMgrGetXInt16Enum("forceload", &forceLoadNb); - - int nbP; + + int nbP =0; uint16_t *FourthDimLoc; if ( am->ArgMgrDefined("4DLoc") ) { @@ -203,6 +209,8 @@ int main(int argc, char *argv[]) } } + bool load = ( 0 != am->ArgMgrDefined("load") ); + bool showlut = ( 0 != am->ArgMgrDefined("SHOWLUT") ); bool ddict = am->ArgMgrDefined("dict") ? true : false; @@ -225,60 +233,73 @@ int main(int argc, char *argv[]) // ----------- End Arguments Manager --------- - + if (ddict) { - GDCM_NAME_SPACE::Global::GetDicts()->GetDefaultPubDict()->AddDict(dict); + GDCM_NAME_SPACE::Global::GetDicts()->GetDefaultPubDict()->AddDict(dict); } if ( fileName != 0 ) // ====== Deal with a single file ====== - { + { GDCM_NAME_SPACE::File *f = GDCM_NAME_SPACE::File::New(); f->SetLoadMode(loadMode); f->SetFileName( fileName ); + f->SetMaxSizeLoadEntry(0xffff); for (int ri=0; riAddForceLoadElement((uint32_t)elemsToForceLoad[2*ri], - (uint32_t)elemsToForceLoad[2*ri+1] ); + (uint32_t)elemsToForceLoad[2*ri+1] ); } + // TODO : find why such a polution -// To avoid polluting the output with messages +// To avoid polluting the output with messages // 'Last system error was : No such file or directory' errno = 0; - bool res = f->Load(); + bool res = false; + try + { + res = f->Load(); + } + catch(std::exception &ex) + { + std::cerr << "sorry an exception was thrown: " << ex.what() << std::endl; + } // GDCM_NAME_SPACE::File::IsReadable() is no usable here, because we deal with - // any kind of gdcm-Parsable *document* + // any kind of gdcm-Parsable *document* // not only GDCM_NAME_SPACE::File (as opposed to GDCM_NAME_SPACE::DicomDir) if ( !res ) { std::cout << "Cannot process file [" << fileName << "]" << std::endl; - std::cout << "Either it doesn't exist, or it's read protected " + std::cout << "Either it doesn't exist, or it's read protected " << std::endl; - std::cout << "or it's not a Dicom File, or its 'header' is bugged" + std::cout << "or it's not a Dicom File, or its 'header' is bugged" << std::endl; std::cout << "use 'PrintFile filein=... debug' to try to guess the pb" << std::endl; f->Delete(); return 0; } + if (nbP == 1) f->SetFourthDimensionLocation(FourthDimLoc[0],FourthDimLoc[1]); + GDCM_NAME_SPACE::FileHelper *fh = GDCM_NAME_SPACE::FileHelper::New(f); fh->SetPrintLevel( level ); fh->Print(); - std::cout << "\n\n" << std::endl; + std::cout << "\n\n" << std::endl; std::cout <GetImageDataSize() << std::endl; std::cout <<" dataSizeRaw " << fh->GetImageDataRawSize() << std::endl; - +if (!noex) +{ int nX,nY,nZ,nT,sPP,planarConfig; std::string pixelType; nX=f->GetXSize(); @@ -327,11 +348,12 @@ errno = 0; std::cout << " SwapCode= " << f->GetSwapCode() << std::endl; std::cout << " ------" << std::endl; + std::cout << "\n\n" << std::endl; std::cout << "X spacing " << f->GetXSpacing() << std::endl; std::cout << "Y spacing " << f->GetYSpacing() << std::endl; std::cout << "Z spacing " << f->GetZSpacing() << std::endl; - + //------------------------------ // Let's get and print some usefull fields about 'Orientation' @@ -387,9 +409,11 @@ errno = 0; << strImagePositionPatientRET << "]" << std::endl; float iop[6]; - /*bool riop = */f->GetImageOrientationPatient(iop); + //bool riop = + f->GetImageOrientationPatient(iop); float ipp[3]; - /*bool ripp = */f->GetImagePositionPatient(ipp); + //bool ripp = + f->GetImagePositionPatient(ipp); std::cout << "Image Position (0x0020,0x0032|0x0030) : " << ipp[0] << " , " << ipp[1] << " , "<< ipp[2] @@ -418,8 +442,82 @@ errno = 0; std::string ori = o->GetOrientation ( f ); if (ori != "\\" ) std::cout << "Orientation [" << ori << "]" << std::endl; - - o->Delete(); + o->Delete(); + + +/* +std::vector valueVector; +GDCM_NAME_SPACE::DataEntry *e_0018_5212 = f->GetDataEntry(0x0018, 0x5212); +bool resJP = e_0018_5212->GetDSValue(valueVector); +if (resJP) { + double test; + for ( int i=0; i < 3; i++ ) { + test = valueVector[i]; + std::cout << " test " << test << std::endl; + } +} +//e_0018_5212->Delete(); +*/ + + +/* ----------------------------- + +// Try : +std::cout << std::endl << std::endl << "===========Try Get Numerical =======" + << std::endl; +GDCM_NAME_SPACE::DataEntry *e; +bool res; +std::vector vd; + +// Transfert Syntax +e=f->GetDataEntry(0x0002,0x0010); +if (e){ + res=e->GetNumerical(vd); + if (!res){ + std::cout << "0x0002,0x0010 not numerical, size =" << vd.size() << std::endl; + } +} +// Columns +e=f->GetDataEntry(0x0028,0x0011); +if (e){ + res=e->GetNumerical(vd); + if (!res){ + std::cout << "0x0028,0x0011 not numerical, size =" << vd.size() << std::endl; + } else { + std::cout << "0x0028,0x0011 numerical, size =" << vd.size() << std::endl; + std::cout << vd[0]<< std::endl; + } +} +// Im Orient (Pat) +e=f->GetDataEntry(0x0020,0x0032); +if (e){ + res=e->GetNumerical(vd); + if (!res){ + std::cout << "0x0020,0x0032 not numerical, size =" << vd.size() << std::endl; + } else { + std::cout << "0x0020,0x0032 numerical, size =" << vd.size() << std::endl; + for(int l=0; lGetLutItemSize() == 8 ) @@ -489,6 +588,7 @@ errno = 0; << (int)(lutrgba16[i*4+2]) << std::endl; } } + */ } else if (showlut) { @@ -522,14 +622,21 @@ errno = 0; f->Delete(); fh->Delete(); } - else // ====== Deal with a Directory ====== - { + // =========================================================================== + else // =============================== Deal with a Directory ===================== + { // =========================================================================== std::cout << "dirName [" << dirName << "]" << std::endl; - GDCM_NAME_SPACE::DirList dirList(dirName,1); // gets recursively the file list + + GDCM_NAME_SPACE::DirList dirList(dirName,rec); // gets recursively (or not) the file list GDCM_NAME_SPACE::DirListType fileList = dirList.GetFilenames(); GDCM_NAME_SPACE::File *f; bool res; + if (fileList.size() == 0) + { + std::cout << "No file found in : [" << dirName << "]" << std::endl; + } + for( GDCM_NAME_SPACE::DirListType::iterator it = fileList.begin(); it != fileList.end(); ++it ) @@ -569,7 +676,8 @@ errno = 0; fh->Print(); //------------------------------ - +if (!noex) +{ // Lets's get and print some usefull fields about 'Orientation' // ------------------------------------------------------------ @@ -629,15 +737,26 @@ errno = 0; std::string ori = o->GetOrientation ( f ); if (ori != "\\" ) std::cout << "Orientation [" << ori << "]" << std::endl; - o->Delete(); - + o->Delete(); +} //------------------------------- if (f->IsReadable()) + { + if (load) // just to see warning messages at load time ! + { + uint8_t *pixels = fh->GetImageData(); (void)pixels; + uint32_t lgth = fh->GetImageDataSize(); (void)lgth; + } + std::cout <c_str()<<" is Readable"<c_str()<<" is NOT Readable"<Delete(); fh->Delete(); }