X-Git-Url: https://git.creatis.insa-lyon.fr/pubgit/?a=blobdiff_plain;f=Example%2FPrintFile.cxx;h=9ac649711aadbb66303183d97f0209f9efe1491f;hb=8d0468bd872660b30ce957dd00004ea205a2b135;hp=1a6f11f303245036b8131567a5388d2cea6420c7;hpb=b1f5f7058f0c0fdcd92aeac0ced76f1c9738daa1;p=gdcm.git diff --git a/Example/PrintFile.cxx b/Example/PrintFile.cxx index 1a6f11f3..9ac64971 100644 --- a/Example/PrintFile.cxx +++ b/Example/PrintFile.cxx @@ -3,8 +3,8 @@ Program: gdcm Module: $RCSfile: PrintFile.cxx,v $ Language: C++ - Date: $Date: 2006/01/18 15:45:21 $ - Version: $Revision: 1.77 $ + Date: $Date: 2007/11/09 17:52:59 $ + Version: $Revision: 1.89 $ Copyright (c) CREATIS (Centre de Recherche et d'Applications en Traitement de l'Image). All rights reserved. See Doc/License.txt or @@ -30,20 +30,20 @@ #include "gdcmOrientation.h" #include -// TODO : code factorization, for 'single file' an 'whole directory' processing +/// \todo : code factorization, for 'single file' an 'whole directory' processing -void ShowLutData(gdcm::File *f); +void ShowLutData(GDCM_NAME_SPACE::File *f); // Nothing is written yet to get LUT Data user friendly // The following is to be moved into a PixelReadConvert method // Let here, waiting for a clever idea on the way to do it. -void ShowLutData(gdcm::File *f) +void ShowLutData(GDCM_NAME_SPACE::File *f) { - gdcm::SeqEntry *modLutSeq = f->GetSeqEntry(0x0028,0x3000); + GDCM_NAME_SPACE::SeqEntry *modLutSeq = f->GetSeqEntry(0x0028,0x3000); if ( modLutSeq !=0 ) { - gdcm::SQItem *sqi= modLutSeq->GetFirstSQItem(); + GDCM_NAME_SPACE::SQItem *sqi= modLutSeq->GetFirstSQItem(); if ( sqi != 0 ) { std::string lutDescriptor = sqi->GetEntryString(0x0028,0x3002); @@ -70,7 +70,7 @@ void ShowLutData(gdcm::File *f) std::cout << "Wrong LUT descriptor" << std::endl; } //LUT Data (CTX dependent) - gdcm::DataEntry *b = sqi->GetDataEntry(0x0028,0x3006); + GDCM_NAME_SPACE::DataEntry *b = sqi->GetDataEntry(0x0028,0x3006); if ( b != 0 ) { int BitsAllocated = f->GetBitsAllocated(); @@ -125,11 +125,14 @@ int main(int argc, char *argv[]) " \n PrintFile : \n ", " Display the header of a ACR-NEMA/PAPYRUS/DICOM File ", " usage: PrintFile {filein=inputFileName|dirin=inputDirectoryName}[level=n]", - " [forceload=listOfElementsToForceLoad] ", - " [dict= privateDirectory] ", + " [forceload=listOfElementsToForceLoad] [rec] [noex] ", + " [4DLoc= ][dict= privateDirectory] ", " [ { [noshadowseq] | [noshadow][noseq] } ] ", " [debug] [warning] ", " level = 0,1,2 : depending on the amount of details user wants to see", + " rec : user wants to parse recursively the directory ", + " noex : user doen't want extra 'user friendly' info ", + " 4DLoc: group-elem(in hexa, no space) of the DataEntry holdind 4thDim", " listOfElementsToForceLoad : group-elem,g2-e2,... (in hexa, no space)", " of Elements to load whatever their length ", " privateDirectory : source file full path name of Shadow Group elems ", @@ -142,7 +145,7 @@ int main(int argc, char *argv[]) FINISH_USAGE // Initialize Arguments Manager - gdcm::ArgMgr *am= new gdcm::ArgMgr(argc, argv); + GDCM_NAME_SPACE::ArgMgr *am= new GDCM_NAME_SPACE::ArgMgr(argc, argv); if (argc == 1 || am->ArgMgrDefined("usage") ) { @@ -151,8 +154,8 @@ int main(int argc, char *argv[]) return 1; } - char *fileName = am->ArgMgrGetString("filein",(char *)0); - char *dirName = am->ArgMgrGetString("dirin",(char *)0); + const char *fileName = am->ArgMgrGetString("filein"); + const char *dirName = am->ArgMgrGetString("dirin"); if ( (fileName == 0 && dirName == 0) || (fileName != 0 && dirName != 0) ) @@ -163,23 +166,26 @@ int main(int argc, char *argv[]) am->ArgMgrUsage(usage); // Display 'usage' delete am; return 1; - } - + } + + bool noex = ( 0 != am->ArgMgrDefined("noex") ); + bool rec = ( 0 != am->ArgMgrDefined("rec") ); + if (am->ArgMgrDefined("debug")) - gdcm::Debug::DebugOn(); + GDCM_NAME_SPACE::Debug::DebugOn(); if (am->ArgMgrDefined("warning")) - gdcm::Debug::WarningOn(); + GDCM_NAME_SPACE::Debug::WarningOn(); - int loadMode = gdcm::LD_ALL; + int loadMode = GDCM_NAME_SPACE::LD_ALL; if ( am->ArgMgrDefined("noshadowseq") ) - loadMode |= gdcm::LD_NOSHADOWSEQ; + loadMode |= GDCM_NAME_SPACE::LD_NOSHADOWSEQ; else { if ( am->ArgMgrDefined("noshadow") ) - loadMode |= gdcm::LD_NOSHADOW; + loadMode |= GDCM_NAME_SPACE::LD_NOSHADOW; if ( am->ArgMgrDefined("noseq") ) - loadMode |= gdcm::LD_NOSEQ; + loadMode |= GDCM_NAME_SPACE::LD_NOSEQ; } int level = am->ArgMgrGetInt("level", 1); @@ -188,14 +194,28 @@ int main(int argc, char *argv[]) uint16_t *elemsToForceLoad = am->ArgMgrGetXInt16Enum("forceload", &forceLoadNb); + int nbP =0; + uint16_t *FourthDimLoc; + if ( am->ArgMgrDefined("4DLoc") ) + { + FourthDimLoc = am->ArgMgrGetXInt16Enum("4DLoc", &nbP); + + if (nbP != 1) + { + std::cout << "4DLoc must have 2 and only 2 components!" << std::endl; + delete am; + return 1; + } + } + bool showlut = ( 0 != am->ArgMgrDefined("SHOWLUT") ); bool ddict = am->ArgMgrDefined("dict") ? true : false; - char *dict = 0; + const char *dict = 0; if (ddict) { - dict = am->ArgMgrGetString("dict",(char *)0); + dict = am->ArgMgrGetString("dict",0); } /* if unused Param we give up */ @@ -210,40 +230,49 @@ int main(int argc, char *argv[]) // ----------- End Arguments Manager --------- - + if (ddict) { - gdcm::Global::GetDicts()->GetDefaultPubDict()->AddDict(dict); + GDCM_NAME_SPACE::Global::GetDicts()->GetDefaultPubDict()->AddDict(dict); } if ( fileName != 0 ) // ====== Deal with a single file ====== - { - gdcm::File *f = gdcm::File::New(); + { + GDCM_NAME_SPACE::File *f = GDCM_NAME_SPACE::File::New(); f->SetLoadMode(loadMode); f->SetFileName( fileName ); + f->SetMaxSizeLoadEntry(0xffff); for (int ri=0; riAddForceLoadElement((uint32_t)elemsToForceLoad[2*ri], - (uint32_t)elemsToForceLoad[2*ri+1] ); + (uint32_t)elemsToForceLoad[2*ri+1] ); } // TODO : find why such a polution -// To avoid polluting the output with messages +// To avoid polluting the output with messages // 'Last system error was : No such file or directory' errno = 0; - bool res = f->Load(); - // gdcm::File::IsReadable() is no usable here, because we deal with - // any kind of gdcm-Parsable *document* - // not only gdcm::File (as opposed to gdcm::DicomDir) + bool res = false; + try + { + res = f->Load(); + } + catch(std::exception &ex) + { + std::cerr << "sorry an exception was thrown: " << ex.what() << std::endl; + } + // GDCM_NAME_SPACE::File::IsReadable() is no usable here, because we deal with + // any kind of gdcm-Parsable *document* + // not only GDCM_NAME_SPACE::File (as opposed to GDCM_NAME_SPACE::DicomDir) if ( !res ) { std::cout << "Cannot process file [" << fileName << "]" << std::endl; - std::cout << "Either it doesn't exist, or it's read protected " + std::cout << "Either it doesn't exist, or it's read protected " << std::endl; - std::cout << "or it's not a Dicom File, or its 'header' is bugged" + std::cout << "or it's not a Dicom File, or its 'header' is bugged" << std::endl; std::cout << "use 'PrintFile filein=... debug' to try to guess the pb" << std::endl; @@ -251,23 +280,30 @@ errno = 0; return 0; } - gdcm::FileHelper *fh = gdcm::FileHelper::New(f); + if (nbP == 1) + f->SetFourthDimensionLocation(FourthDimLoc[0],FourthDimLoc[1]); + + + GDCM_NAME_SPACE::FileHelper *fh = GDCM_NAME_SPACE::FileHelper::New(f); fh->SetPrintLevel( level ); fh->Print(); - std::cout << "\n\n" << std::endl; + std::cout << "\n\n" << std::endl; std::cout <GetImageDataSize() << std::endl; std::cout <<" dataSizeRaw " << fh->GetImageDataRawSize() << std::endl; - - int nX,nY,nZ,sPP,planarConfig; +if (!noex) +{ + int nX,nY,nZ,nT,sPP,planarConfig; std::string pixelType; nX=f->GetXSize(); nY=f->GetYSize(); nZ=f->GetZSize(); - std::cout << " DIMX=" << nX << " DIMY=" << nY << " DIMZ=" << nZ + nT=f->GetTSize(); + std::cout << " DIMX=" << nX << " DIMY=" << nY + << " DIMZ=" << nZ << " DIMT=" << nT << std::endl; pixelType = f->GetPixelType(); @@ -308,60 +344,89 @@ errno = 0; std::cout << " SwapCode= " << f->GetSwapCode() << std::endl; std::cout << " ------" << std::endl; - //std::cout << "\n\n" << std::endl; - //std::cout << "X spacing " << f->GetXSpacing() << std::endl; - //std::cout << "Y spacing " << f->GetYSpacing() << std::endl; - //std::cout << "Z spacing " << f->GetZSpacing() << std::endl; - + std::cout << "\n\n" << std::endl; + std::cout << "X spacing " << f->GetXSpacing() << std::endl; + std::cout << "Y spacing " << f->GetYSpacing() << std::endl; + std::cout << "Z spacing " << f->GetZSpacing() << std::endl; + //------------------------------ - // Lets's get and print some usefull fields about 'Orientation' + + // Let's get and print some usefull fields about 'Orientation' // ------------------------------------------------------------ std::string strPatientPosition = f->GetEntryString(0x0018,0x5100); - if ( strPatientPosition != gdcm::GDCM_UNFOUND + if ( strPatientPosition != GDCM_NAME_SPACE::GDCM_UNFOUND && strPatientPosition != "" ) std::cout << "PatientPosition (0x0010,0x5100)= [" << strPatientPosition << "]" << std::endl; std::string strViewPosition = f->GetEntryString(0x0018,0x5101); - if ( strViewPosition != gdcm::GDCM_UNFOUND + if ( strViewPosition != GDCM_NAME_SPACE::GDCM_UNFOUND && strViewPosition != "" ) - std::cout << "strViewPosition (0x0010,0x5101)= [" + std::cout << "View Position (0x0018,0x5101)= [" << strViewPosition << "]" << std::endl; std::string strPatientOrientation = f->GetEntryString(0x0020,0x0020); - if ( strPatientOrientation != gdcm::GDCM_UNFOUND + if ( strPatientOrientation != GDCM_NAME_SPACE::GDCM_UNFOUND && strPatientOrientation != "") std::cout << "PatientOrientation (0x0020,0x0020)= [" << strPatientOrientation << "]" << std::endl; std::string strImageOrientationPatient = f->GetEntryString(0x0020,0x0037); - if ( strImageOrientationPatient != gdcm::GDCM_UNFOUND + if ( strImageOrientationPatient != GDCM_NAME_SPACE::GDCM_UNFOUND && strImageOrientationPatient != "" ) std::cout << "ImageOrientationPatient (0x0020,0x0037)= [" << strImageOrientationPatient << "]" << std::endl; std::string strImageOrientationRET = f->GetEntryString(0x0020,0x0035); - if ( strImageOrientationRET != gdcm::GDCM_UNFOUND + if ( strImageOrientationRET != GDCM_NAME_SPACE::GDCM_UNFOUND && strImageOrientationRET != "" ) std::cout << "ImageOrientationRET (0x0020,0x0035)= [" << strImageOrientationRET << "]" << std::endl; + std::string strImagePositionPatient = + f->GetEntryString(0x0020,0x0032); + if ( strImagePositionPatient != GDCM_NAME_SPACE::GDCM_UNFOUND + && strImagePositionPatient != "" ) + std::cout << "ImagePositionPatient (0x0020,0x0032)= [" + << strImagePositionPatient << "]" << std::endl; + + std::string strImagePositionPatientRET = + f->GetEntryString(0x0020,0x0030); + if ( strImagePositionPatientRET != GDCM_NAME_SPACE::GDCM_UNFOUND + && strImagePositionPatientRET != "" ) + std::cout << "ImagePositionPatientRET (0x0020,0x0030)= [" + << strImagePositionPatientRET << "]" << std::endl; + + float iop[6]; + /*bool riop = */f->GetImageOrientationPatient(iop); + float ipp[3]; + /*bool ripp = */f->GetImagePositionPatient(ipp); + + std::cout << "Image Position (0x0020,0x0032|0x0030) : " + << ipp[0] << " , " << ipp[1] << " , "<< ipp[2] + << std::endl; + std::cout << "Image Orientation (0x0020,0x0037|0x0035) : " + << iop[0] << " , " << iop[1] << " , "<< iop[2] << " , " + << iop[3] << " , " << iop[4] << " , "<< iop[5] + << std::endl; + + // Let's compute 'user friendly' results about 'Orientation' // --------------------------------------------------------- - gdcm::Orientation *o = gdcm::Orientation::New(); + GDCM_NAME_SPACE::Orientation *o = GDCM_NAME_SPACE::Orientation::New(); - if ( strImageOrientationPatient != gdcm::GDCM_UNFOUND || - strImageOrientationRET != gdcm::GDCM_UNFOUND ) + if ( strImageOrientationPatient != GDCM_NAME_SPACE::GDCM_UNFOUND || + strImageOrientationRET != GDCM_NAME_SPACE::GDCM_UNFOUND ) { - gdcm::OrientationType orient = o->GetOrientationType( f ); + GDCM_NAME_SPACE::OrientationType orient = o->GetOrientationType( f ); std::cout << "TypeOrientation = " << orient << " (-> " << o->GetOrientationTypeString(orient) << " )" << std::endl; @@ -370,8 +435,8 @@ errno = 0; std::string ori = o->GetOrientation ( f ); if (ori != "\\" ) std::cout << "Orientation [" << ori << "]" << std::endl; - - o->Delete(); + o->Delete(); +} //------------------------------ @@ -386,10 +451,10 @@ errno = 0; // Nothing is written yet to get LUT Data user friendly // The following is to be moved into a PixelRedaConvert method - gdcm::SeqEntry *modLutSeq = f->GetSeqEntry(0x0028,0x3000); + GDCM_NAME_SPACE::SeqEntry *modLutSeq = f->GetSeqEntry(0x0028,0x3000); if ( modLutSeq !=0 ) { - gdcm::SQItem *sqi= modLutSeq->GetFirstSQItem(); + GDCM_NAME_SPACE::SQItem *sqi= modLutSeq->GetFirstSQItem(); if ( !sqi ) { std::string lutDescriptor = sqi->GetEntryString(0x0028,0x3002); @@ -405,7 +470,7 @@ errno = 0; { std::cout << "Wrong LUT descriptor" << std::endl; } - gdcm::DataEntry *b = sqi->GetDataEntry(0x0028,0x3006); + GDCM_NAME_SPACE::DataEntry *b = sqi->GetDataEntry(0x0028,0x3006); if ( b != 0 ) { if ( b->GetLength() != 0 ) @@ -448,7 +513,7 @@ errno = 0; ShowLutData(f); } - // Parsability of the gdcm::Document already checked, after Load() ! + // Parsability of the GDCM_NAME_SPACE::Document already checked, after Load() ! if ( f->IsReadable() ) { @@ -474,21 +539,28 @@ errno = 0; f->Delete(); fh->Delete(); } - else // ====== Deal with a Directory ====== - { + // =========================================================================== + else // =============================== Deal with a Directory ===================== + { // =========================================================================== std::cout << "dirName [" << dirName << "]" << std::endl; - gdcm::DirList dirList(dirName,1); // gets recursively the file list - gdcm::DirListType fileList = dirList.GetFilenames(); - gdcm::File *f; + + GDCM_NAME_SPACE::DirList dirList(dirName,rec); // gets recursively (or not) the file list + GDCM_NAME_SPACE::DirListType fileList = dirList.GetFilenames(); + GDCM_NAME_SPACE::File *f; bool res; - for( gdcm::DirListType::iterator it = fileList.begin(); + if (fileList.size() == 0) + { + std::cout << "No file found in : [" << dirName << "]" << std::endl; + } + + for( GDCM_NAME_SPACE::DirListType::iterator it = fileList.begin(); it != fileList.end(); ++it ) { std::cout << std::endl<<" Start processing :[" << it->c_str() << "]" << std::endl; - f = gdcm::File::New(); + f = GDCM_NAME_SPACE::File::New(); f->SetLoadMode(loadMode); f->SetFileName( it->c_str() ); @@ -516,46 +588,47 @@ errno = 0; continue; } - gdcm::FileHelper *fh = gdcm::FileHelper::New(f); + GDCM_NAME_SPACE::FileHelper *fh = GDCM_NAME_SPACE::FileHelper::New(f); fh->SetPrintLevel( level ); fh->Print(); //------------------------------ - +if (!noex) +{ // Lets's get and print some usefull fields about 'Orientation' // ------------------------------------------------------------ std::string strPatientPosition = f->GetEntryString(0x0018,0x5100); - if ( strPatientPosition != gdcm::GDCM_UNFOUND + if ( strPatientPosition != GDCM_NAME_SPACE::GDCM_UNFOUND && strPatientPosition != "" ) std::cout << "PatientPosition (0x0010,0x5100)= [" << strPatientPosition << "]" << std::endl; std::string strViewPosition = f->GetEntryString(0x0018,0x5101); - if ( strViewPosition != gdcm::GDCM_UNFOUND + if ( strViewPosition != GDCM_NAME_SPACE::GDCM_UNFOUND && strViewPosition != "" ) std::cout << "strViewPosition (0x0010,0x5101)= [" << strViewPosition << "]" << std::endl; std::string strPatientOrientation = f->GetEntryString(0x0020,0x0020); - if ( strPatientOrientation != gdcm::GDCM_UNFOUND + if ( strPatientOrientation != GDCM_NAME_SPACE::GDCM_UNFOUND && strPatientOrientation != "") std::cout << "PatientOrientation (0x0020,0x0020)= [" - << strPatientOrientation << "]" << std::endl; + << strPatientOrientation << "]" << std::endl; std::string strImageOrientationPatient = f->GetEntryString(0x0020,0x0037); - if ( strImageOrientationPatient != gdcm::GDCM_UNFOUND + if ( strImageOrientationPatient != GDCM_NAME_SPACE::GDCM_UNFOUND && strImageOrientationPatient != "" ) std::cout << "ImageOrientationPatient (0x0020,0x0037)= [" << strImageOrientationPatient << "]" << std::endl; std::string strImageOrientationRET = f->GetEntryString(0x0020,0x0035); - if ( strImageOrientationRET != gdcm::GDCM_UNFOUND + if ( strImageOrientationRET != GDCM_NAME_SPACE::GDCM_UNFOUND && strImageOrientationRET != "" ) { std::cout << "ImageOrientationRET (0x0020,0x0035)= [" @@ -565,14 +638,14 @@ errno = 0; // Let's compute 'user friendly' results about 'Orientation' // --------------------------------------------------------- - gdcm::Orientation *o = gdcm::Orientation::New(); + GDCM_NAME_SPACE::Orientation *o = GDCM_NAME_SPACE::Orientation::New(); - if ( strImageOrientationPatient != gdcm::GDCM_UNFOUND || - strImageOrientationRET != gdcm::GDCM_UNFOUND ) + if ( strImageOrientationPatient != GDCM_NAME_SPACE::GDCM_UNFOUND || + strImageOrientationRET != GDCM_NAME_SPACE::GDCM_UNFOUND ) { - gdcm::OrientationType orient = o->GetOrientationType( f ); + GDCM_NAME_SPACE::OrientationType orient = o->GetOrientationType( f ); std::cout << "TypeOrientation = " << orient << " (-> " << o->GetOrientationTypeString(orient) << " )" << std::endl; @@ -582,7 +655,7 @@ errno = 0; if (ori != "\\" ) std::cout << "Orientation [" << ori << "]" << std::endl; o->Delete(); - +} //------------------------------- if (f->IsReadable())