X-Git-Url: https://git.creatis.insa-lyon.fr/pubgit/?a=blobdiff_plain;f=Example%2FReWrite.cxx;h=dab56fb6931623ff89aaae412e768c9e38f35ee0;hb=91e8773acafd98b328f10715d8c8964fded57449;hp=97f7d3f105922f031f09ee2594a0c1273b4082da;hpb=4d992954520d43c6f2fb555b7cd721574978c23a;p=gdcm.git diff --git a/Example/ReWrite.cxx b/Example/ReWrite.cxx index 97f7d3f1..dab56fb6 100644 --- a/Example/ReWrite.cxx +++ b/Example/ReWrite.cxx @@ -3,8 +3,8 @@ Program: gdcm Module: $RCSfile: ReWrite.cxx,v $ Language: C++ - Date: $Date: 2005/07/07 17:31:53 $ - Version: $Revision: 1.8 $ + Date: $Date: 2006/04/19 10:23:56 $ + Version: $Revision: 1.20 $ Copyright (c) CREATIS (Centre de Recherche et d'Applications en Traitement de l'Image). All rights reserved. See Doc/License.txt or @@ -29,10 +29,13 @@ int main(int argc, char *argv[]) " \n ReWrite :\n", " Re write a full gdcm-readable Dicom image ", " (usefull when the file header is not very straight). ", - "", - " usage: ReWrite filein=inputFileName fileout=anonymizedFileName ", - " [mode=write mode] [noshadow] [noseq][debug] ", + " ", + " usage: ReWrite filein=inputFileName fileout=outputFileName ", + " [mode=write mode] [noshadow] [noseq][debug] ", + " [rubout=xBegin,xEnd,yBegin,yEnd [ruboutvalue=n (<255)] ] ", + " ", " mode = a (ACR), x (Explicit VR Dicom), r (RAW : only pixels) ", + " noshadowseq: user doesn't want to load Private Sequences ", " noshadow : user doesn't want to load Private groups (odd number)", " noseq : user doesn't want to load Sequences ", " rgb : user wants to tranform LUT (if any) to RGB pixels ", @@ -42,7 +45,7 @@ int main(int argc, char *argv[]) // ----- Initialize Arguments Manager ------ gdcm::ArgMgr *am = new gdcm::ArgMgr(argc, argv); - if (am->ArgMgrDefined("usage")) + if (argc == 1 || am->ArgMgrDefined("usage")) { am->ArgMgrUsage(usage); // Display 'usage' delete am; @@ -51,6 +54,7 @@ int main(int argc, char *argv[]) char *fileName = am->ArgMgrWantString("filein",usage); if ( fileName == NULL ) { + std::cout << "'filein= ...' is mandatory" << std::endl; delete am; return 0; } @@ -58,26 +62,49 @@ int main(int argc, char *argv[]) char *outputFileName = am->ArgMgrWantString("fileout",usage); if ( outputFileName == NULL ) { + std::cout << "'fileout= ...' is mandatory" << std::endl; delete am; return 0; } - char *mode = am->ArgMgrGetString("mode",(char *)"X"); + const char *mode = am->ArgMgrGetString("mode","X"); - int loadMode; - if ( am->ArgMgrDefined("noshadow") && am->ArgMgrDefined("noseq") ) - loadMode = NO_SEQ | NO_SHADOW; - else if ( am->ArgMgrDefined("noshadow") ) - loadMode = NO_SHADOW; - else if ( am->ArgMgrDefined("noseq") ) - loadMode = NO_SEQ; - else - loadMode = 0; + int loadMode = gdcm::LD_ALL; + if ( am->ArgMgrDefined("noshadowseq") ) + loadMode |= gdcm::LD_NOSHADOWSEQ; + else + { + if ( am->ArgMgrDefined("noshadow") ) + loadMode |= gdcm::LD_NOSHADOW; + if ( am->ArgMgrDefined("noseq") ) + loadMode |= gdcm::LD_NOSEQ; + } bool rgb = ( 0 != am->ArgMgrDefined("RGB") ); if (am->ArgMgrDefined("debug")) gdcm::Debug::DebugOn(); + + bool fail = false; + int *boundVal; + int ruboutVal; + bool rubout = false; + if (am->ArgMgrDefined("rubout")) + { + int nbBound; + boundVal = am->ArgMgrGetListOfInt("rubout", &nbBound); + + if (nbBound !=4) + { + std::cout << "Illegal number of 'rubout' boundary values (expected : 4, found:" + << nbBound << "); 'rubout' ignored" << std::endl; + fail = true; + } + + ruboutVal = am->ArgMgrGetInt("ruboutvalue", 0); + rubout = true; + } + // if unused Params we give up if ( am->ArgMgrPrintUnusedLabels() ) @@ -91,24 +118,24 @@ int main(int argc, char *argv[]) // ----------- End Arguments Manager --------- - gdcm::File *f = new gdcm::File(); + gdcm::File *f = gdcm::File::New(); f->SetLoadMode( loadMode ); f->SetFileName( fileName ); bool res = f->Load(); if ( !res ) { - delete f; + f->Delete(); return 0; } if (!f->IsReadable()) { std::cerr << "Sorry, not a Readable DICOM / ACR File" <Delete(); return 0; } - gdcm::FileHelper *fh = new gdcm::FileHelper(f); + gdcm::FileHelper *fh = gdcm::FileHelper::New(f); void *imageData; int dataSize; @@ -145,54 +172,133 @@ int main(int argc, char *argv[]) << " SampleserPixel=" << sPP << " PlanarConfiguration=" << planarConfig << " PhotometricInterpretation=" - << f->GetEntryValue(0x0028,0x0004) + << f->GetEntryString(0x0028,0x0004) << std::endl; int numberOfScalarComponents=f->GetNumberOfScalarComponents(); - std::cout << "NumberOfScalarComponents " << numberOfScalarComponents <GetTransferSyntaxName(); - std::cout << " TransferSyntaxName= [" << transferSyntaxName << "]" << std::endl; - - switch (mode[0]) - { - case 'A' : - case 'a' : - // Writting an ACR file - // from a full gdcm readable File - - std::cout << "WriteACR" << std::endl; - fh->WriteAcr(outputFileName); - break; - - case 'D' : // Not documented in the 'usage', because the method is known to be bugged. - case 'd' : - // Writting a DICOM Implicit VR file - // from a full gdcm readable File + std::cout << " TransferSyntaxName= [" << transferSyntaxName << "]" + << std::endl; - std::cout << "WriteDCM Implicit VR" << std::endl; - fh->WriteDcmImplVR(outputFileName); - break; + // Since we just ReWrite the image, we know no modification + // was performed on the pixels. + // We don't want this image appears as a 'Secondary Captured image' + fh->SetContentType(gdcm::UNMODIFIED_PIXELS_IMAGE); + - case 'X' : - case 'x' : - // writting a DICOM Explicit VR - // from a full gdcm readable File + if (rubout) + { + if (boundVal[0]<0 || boundVal[0]>nX) + { + std::cout << "xBegin out of bounds; 'rubout' ignored" << std::endl; + fail = true; + } + if (boundVal[1]<0 || boundVal[1]>nX) + { + std::cout << "xEnd out of bounds; 'rubout' ignored" << std::endl; + fail = true; + } + if (boundVal[0] > boundVal[1]) + { + std::cout << "xBegin greater than xEnd; 'rubout' ignored" << std::endl; + fail = true; + } + if (boundVal[2]<0 || boundVal[2]>nY) + { + std::cout << "yBegin out of bounds; 'rubout' ignored" << std::endl; + fail = true; + } + if (boundVal[3]<0 || boundVal[3]>nY) + { + std::cout << "yEnd out of bounds; 'rubout' ignored" << std::endl; + fail = true; + } + if (boundVal[2] > boundVal[3]) + { + std::cout << "yBegin greater than yEnd; 'rubout' ignored" << std::endl; + fail = true; + } + if (!fail) + { + int pixelLength = f->GetBitsAllocated()/8; + int lineLength = nX * sPP * pixelLength; + size_t lengthToRubout = (boundVal[1]-boundVal[0])*sPP*pixelLength; + int offsetToBeginOfRubout = boundVal[0]*sPP*pixelLength+lineLength*boundVal[2]; + + for(int rbl=boundVal[2]; rblWriteDcmExplVR(outputFileName); - break; + switch (mode[0]) + { + case 'A' : + case 'a' : + // Writting an ACR file + // from a full gdcm readable File + std::cout << "WriteACR" << std::endl; + fh->WriteAcr(outputFileName); + break; - case 'R' : - case 'r' : - // Writting a Raw File, + case 'D' : // Not documented in the 'usage', because the method + case 'd' : // is known to be bugged. + // Writting a DICOM Implicit VR file + // from a full gdcm readable File + std::cout << "WriteDCM Implicit VR" << std::endl; + fh->WriteDcmImplVR(outputFileName); + break; - std::cout << "WriteRaw" << std::endl; - fh->WriteRawData(outputFileName); - break; + case 'X' : + case 'x' : + // writting a DICOM Explicit VR + // from a full gdcm readable File + std::cout << "WriteDCM Explicit VR" << std::endl; + // fh->WriteDcmExplVR(outputFileName); + // Try this one : + fh->SetWriteTypeToDcmExplVR(); + fh->Write(outputFileName); + break; + case 'R' : + case 'r' : + // Writting a Raw File, + std::cout << "WriteRaw" << std::endl; + fh->WriteRawData(outputFileName); + break; + + // Just for fun : + // Write a 'Video inverse' version of the file. + // *Not* described, on purpose, in the USAGE + case 'V' : + case 'v' : + if ( fh->GetFile()->GetBitsAllocated() == 8) + { + std::cout << "videoinv for 8 bits" << std::endl; + for (int i=0; iWriteDcmExplVR(outputFileName); + break; } - delete f; - delete fh; + + f->Delete(); + fh->Delete(); return 0; }