X-Git-Url: https://git.creatis.insa-lyon.fr/pubgit/?a=blobdiff_plain;f=Testing%2FCMakeLists.txt;h=96586f509a4feb6eb2e840f7384450c692422ca4;hb=246661671d9acae8b7d19dce57bd9fe2b43fc73a;hp=0b27899a2762221658936f06381f75dcb1193395;hpb=3b0f255e96f0f6cd246bd69c7dcc31443bc75bbb;p=gdcm.git diff --git a/Testing/CMakeLists.txt b/Testing/CMakeLists.txt index 0b27899a..eba83024 100644 --- a/Testing/CMakeLists.txt +++ b/Testing/CMakeLists.txt @@ -1,52 +1,281 @@ -# TODO: -# http://www.cmake.org/pipermail/cmake/2001-November/002491.html -# So that dll is copied to each subdir where needed +# CMakeLists for Testing purpose +# Cxx file that need a file to run should be place aproprietly SET(CXX_TEST_PATH ${EXECUTABLE_OUTPUT_PATH}) SET(GDCM_TESTS ${CXX_TEST_PATH}/gdcmTests) -INCLUDE (${CMAKE_ROOT}/Modules/CheckIncludeFile.cmake) -CHECK_INCLUDE_FILE("stdint.h" CMAKE_HAVE_STDINT_H) +# add test that does not require data: +# They usally return if no argument is given +SET(TEST_SOURCES + TestEmpty.cxx + TestUtil.cxx + TestBug.cxx + TestHash.cxx + TestCommand.cxx + TestTS.cxx + TestVR.cxx + TestDictGroupName.cxx + TestDict.cxx + TestDataEntry.cxx + TestWriteSimple.cxx + TestImageSet.cxx + TestDicomDirElement.cxx + TestDicomString.cxx + TestEnumVR.cxx + TestBuildUpDicomDir.cxx # writes a file named "NewDICOMDIR" +) +IF(UNIX OR WIN32) + SET(TEST_SOURCES ${TEST_SOURCES} + TestInline.cxx + ) +ENDIF(UNIX OR WIN32) + +# add tests that require data +IF (GDCM_DATA_ROOT) + SET(TEST_SOURCES ${TEST_SOURCES} + TestFileAccessors.cxx + TestMakeIcon.cxx + TestLoadAllDocumentsNoPrivNoSeq.cxx # includes generated gdcmDataImages.h + #TestLoadAllDocumentsNoShadow.cxx # includes generated gdcmDataImages.h + TestPrintAllDocument.cxx # includes generated gdcmDataImages.h + #TestAllEntryVerify.cxx # includes generated gdcmDataImages.h + #TestAllReadCompareDicom.cxx # includes generated gdcmDataImages.h + TestReadWriteReadCompare.cxx # includes generated gdcmDataImages.h + TestReadWriteJPEGReadCompare.cxx # includes generated gdcmDataImages.h + #TestReadWriteJPEG2000ReadCompare.cxx # includes generated gdcmDataImages.h + + #TestCopyDicom.cxx # includes generated gdcmDataImages.h + # TestCopyRescaleDicom.cxx # includes generated gdcmDataImages.h + #TestChangeHeader.cxx + # TestAnonymize.cxx + TestDirList.cxx + TestDicomDir.cxx # require DICOMDIR -IF(NOT CMAKE_HAVE_STDINT_H) - SET(GDCM_TEST_COMPILE_FLAGS "-DHAVE_NO_STDINT_H") -ENDIF(NOT CMAKE_HAVE_STDINT_H) + TestMakeDicomDir.cxx # writes a file named "NewDICOMDIR" + TestSerieHelper.cxx # uses gdcmData as a default root directory + TestAllVM.cxx + TestValidate.cxx #Just to have on overviews of oddities ... + ) + # add test that require VTK: + IF(GDCM_VTK) + + IF("${VTK_MAJOR_VERSION}" LESS 4) + MESSAGE(FATAL_ERROR "This VTK version is not supported, you are on your own !") + ELSE("${VTK_MAJOR_VERSION}" LESS 4) + + IF("${VTK_MAJOR_VERSION}" EQUAL 4 AND "${VTK_MINOR_VERSION}" EQUAL 2) + MESSAGE(FATAL_ERROR "This VTK version is not supported, you are on your own !" + "Although gdcm should compile fine. You just need to turn BUILD_TESTING:=OFF") + ENDIF("${VTK_MAJOR_VERSION}" EQUAL 4 AND "${VTK_MINOR_VERSION}" EQUAL 2) + IF("${VTK_MAJOR_VERSION}" EQUAL 4 AND "${VTK_MINOR_VERSION}" EQUAL 4 AND "${VTK_BUILD_VERSION}" LESS 3) + MESSAGE(FATAL_ERROR "This VTK version is not supported, you are on your own !" + "Although gdcm should compile fine. You just need to turn BUILD_TESTING:=OFF") + ENDIF("${VTK_MAJOR_VERSION}" EQUAL 4 AND "${VTK_MINOR_VERSION}" EQUAL 4 AND "${VTK_BUILD_VERSION}" LESS 3) + + # Include the VTK library since we know this is going to work + INCLUDE(${VTK_USE_FILE}) + + INCLUDE_DIRECTORIES( + ${GDCM_SOURCE_DIR}/vtk + ) + SET(TEST_SOURCES ${TEST_SOURCES} + VTKTestRead.cxx + VTKTestReadSeq.cxx + VTKTestWrite.cxx + VTKTestWriteSeq.cxx + ) + ENDIF("${VTK_MAJOR_VERSION}" LESS 4) + ENDIF(GDCM_VTK) +ENDIF (GDCM_DATA_ROOT) -SET(TEST_SOURCES - PrintHeader.cxx - testWrite.cxx - testChangeEntete.cxx - hashtest.cxx - bug1.cxx - pourFindTaggs.cxx - dcm2acr.cxx - PrintDicomDir.cxx - makeDicomDir.cxx - testDicomDir.cxx -) # include stuff INCLUDE_DIRECTORIES( - ${GDCM_SOURCE_DIR}/src/ + ${GDCM_SOURCE_DIR}/src + ${GDCM_BINARY_DIR} ) +CREATE_TEST_SOURCELIST(Tests gdcmTests.cxx ${TEST_SOURCES}) +ADD_EXECUTABLE(gdcmTests ${Tests}) +IF(GDCM_VTK) + IF(GDCM_DATA_ROOT) + TARGET_LINK_LIBRARIES(gdcmTests vtkgdcm vtkRendering) + ELSE(GDCM_DATA_ROOT) + TARGET_LINK_LIBRARIES(gdcmTests gdcm) + ENDIF(GDCM_DATA_ROOT) +ELSE(GDCM_VTK) + TARGET_LINK_LIBRARIES(gdcmTests gdcm) +ENDIF(GDCM_VTK) + +SET (TestsToRun ${Tests}) +REMOVE (TestsToRun gdcmTests.cxx) + # Loop over files and create executables FOREACH(file ${TEST_SOURCES}) - #Doh ! I need to specify each time the compile flags ! - IF(GDCM_TEST_COMPILE_FLAGS) - SET_SOURCE_FILES_PROPERTIES(${file} - PROPERTIES - COMPILE_FLAGS ${GDCM_TEST_COMPILE_FLAGS} - ) - ENDIF(GDCM_TEST_COMPILE_FLAGS) GET_FILENAME_COMPONENT(name ${file} NAME_WE) ADD_TEST(${name} ${GDCM_TESTS} ${name}) ENDFOREACH(file ${TEST_SOURCES}) +#----------------------------------------------------------------------------- + +# We need to test the reading of all dicom images in the gdcmData directory +# First parse this directory and extract all images + +FILE(GLOB GDCM_DATA_IMAGES_GLOB + "${GDCM_DATA_ROOT}/*.acr" + "${GDCM_DATA_ROOT}/*.dcm" + "${GDCM_DATA_ROOT}/*.nema" + "${GDCM_DATA_ROOT}/*.ima" + ) + +FILE(GLOB GDCM_DATA_EXTRA_IMAGES_GLOB + "${GDCM_DATA_EXTRA_ROOT}/gdcmSampleData/images_of_interest/*.dcm" + ) +#MESSAGE(${GDCM_DATA_EXTRA_IMAGES_GLOB}) + +# Black list of images known to break lots of readers (efilm, xmedcon ...): +SET(BLACK_LIST + # Multiframe Papyrus format image + # Just to remember this format exists, and is gdcm::File compliant + # (NOT gdcm::FileHelper ...) + # any contribution is welcome + "PET-cardio-Multiframe-Papyrus.dcm" + # From David Clunie's Compresion Dataset + "D_CLUNIE_CT1_JLSN.dcm" + "D_CLUNIE_CT1_JLSL.dcm" + #Not a Dicom Image, but a RT Object + "RS2.16.124.113534.2.3.5.0.120040728.21342.353.12747_anonimized.dcm" + #Dicom MPEG image + "ETIAM_video_002.dcm" + #Something stupid occured in the code for LibIDO images. + #I Black list them for a while. JP + #"gdcm-ACR-LibIDO.acr" + "LIBIDO-24-ACR_NEMA-Rectangle.dcm" + #16 Bits per pixel images with LUT 16 Bits. + #I wait to be 100% sure before releasing them. JP + "rle16sti.dcm" + "rle16loo.dcm" + # Jasper cannot handle this image, only kakadu so far, unless you patch jasper + # but then it breaks other images... + "CT_Phillips_JPEG2K_Decompr_Problem.dcm" + + #RTDOSE, 32 bits image : cannot be compressed + #"RTDOSE.dcm" + + # + # ------------ + # + #Still cause troubles (see the .README.txt file for more details) + "MR_Philips_Intera_in_SQ_2001_e05f_item_wrong_lgt_use_NOSHADOWSEQ.dcm" + "MR_Philips_Intera_PrivateSequenceExplicitVR.dcm" + #The 2 previous images are identical ! + #--> Replaced by more significant name + "MR_Philips_Intera_PrivateSequenceExplicitVR_in_SQ_2001_e05f_item_wrong_lgt_use_NOSHADOWSEQ.dcm" + + #hexedit shows something *very* strange around offset 0x76e ! + #the images looks *over*corrupted (on disc, not from the manufacturer!) + "MR_Philips_Intera_PrivateSequenceImplicitVR.dcm" + + # Seems this one hangs on 64 bits processors ?!? + # I blacklist it until the pb is solved. + # (to get some more green on the Dasboards) + "MR_Philips-Intera_BreaksNOSHADOW.dcm" + + # No way we'll ever be able to read that... + "ELSCINT1_LOSSLESS_RICE.dcm" + + # Are we even be able to support our own bugs ? + "SIEMENS_MAGNETOM-12-MONO2-GDCM12-VRUN.dcm" + "SIEMENS_GBS_III-16-ACR_NEMA_1-ULis2Bytes.dcm" + ) + +# Create a specific list of dicom files that we know are part of a sequence +SET(SEQ_LIST + "SIEMENS_MAGNETOM-12-MONO2-FileSeq[0-9].dcm" + ) + +# Add a special test that requires dciodvfy from dicom3tools +INCLUDE(${GDCM_SOURCE_DIR}/CMake/FindDicom3Tools.cmake) + +# This is a GLOB expression, change it into a list separated with a comma and \n +SET(GDCM_DATA_IMAGES) +SET(GDCM_DATA_SEQ_IMAGES) +FOREACH(filename ${GDCM_DATA_IMAGES_GLOB}) + GET_FILENAME_COMPONENT(filename_temp ${filename} NAME) + IF(DCIODVFY_FOUND) + #ADD_TEST("DCIODVFY-INPUT-${filename_temp}" "${DCIODVFY_EXECUTABLE}" "${filename}") + #ADD_TEST("DCIODVFY-OUTPUT-${filename_temp}" "${DCIODVFY_EXECUTABLE}" "${GDCM_DATA_ROOT}/BaselineDicom/${filename_temp}") + ENDIF(DCIODVFY_FOUND) + STRING(REGEX MATCH ${filename_temp} bad_dicom ${BLACK_LIST}) + IF(NOT bad_dicom) + SET(GDCM_DATA_IMAGES "${GDCM_DATA_IMAGES}\n\"${filename_temp}\",") + # SEQ_LIST is a regular expression: + STRING(REGEX MATCH ${SEQ_LIST} is_seq ${filename_temp}) + IF(is_seq) + SET(GDCM_DATA_SEQ_IMAGES "${GDCM_DATA_SEQ_IMAGES}\n\"${filename_temp}\",") + ENDIF(is_seq) + ENDIF(NOT bad_dicom) +ENDFOREACH(filename) + +# Paranoid / dcmdump +IF(GDCM_DCMTK_CHECK) +FOREACH(filename ${GDCM_DATA_IMAGES_GLOB} ${GDCM_DATA_EXTRA_IMAGES_GLOB}) + GET_FILENAME_COMPONENT(filename_temp ${filename} NAME) + STRING(REGEX MATCH ${filename_temp} bad_dicom ${BLACK_LIST}) + IF(NOT bad_dicom) + IF(BUILD_EXAMPLES) + FOREACH(mode a d x) #r + FOREACH(opt "" monochrome1 noshadowseq noshadow noseq rgb) + ADD_TEST(ReWrite-${mode}-${opt}-${filename_temp} ${EXECUTABLE_OUTPUT_PATH}/ReWrite filein=${filename} fileout=${GDCM_BINARY_DIR}/${mode}-${opt}-${filename_temp} mode=${mode} ${opt}) + ADD_TEST(dcmdump-${mode}-${opt}-${filename_temp} /usr/bin/dcmdump -E -dc +ae ${GDCM_BINARY_DIR}/${mode}-${opt}-${filename_temp}) + #ADD_TEST(ReWrite-${mode}-${opt}-${filename_temp}-bis ${EXECUTABLE_OUTPUT_PATH}/ReWrite filein=${GDCM_BINARY_DIR}/${mode}-${opt}-${filename_temp} fileout=${GDCM_BINARY_DIR}/reference.dcm mode=${mode} ${opt}) + #ADD_TEST(diff-${mode}-${opt}-${filename_temp} /usr/bin/diff ${GDCM_BINARY_DIR}/${mode}-${opt}-${filename_temp} ${GDCM_BINARY_DIR}/reference.dcm) + ENDFOREACH(opt) + ENDFOREACH(mode) + ENDIF(BUILD_EXAMPLES) + ENDIF(NOT bad_dicom) +ENDFOREACH(filename) +ENDIF(GDCM_DCMTK_CHECK) + +# Populate GDCM_DATA_IMAGES: +FILE(WRITE "${GDCM_BINARY_DIR}/gdcmDataImages.h" + "const char * const gdcmDataImages[] = { ${GDCM_DATA_IMAGES}\n0 };\n" +) + +# Populate GDCM_DATA_SEQ_IMAGES: +FILE(WRITE "${GDCM_BINARY_DIR}/gdcmDataSeqImages.h" + "const char * const gdcmDataSeqImages[] = { ${GDCM_DATA_SEQ_IMAGES}\n0 };\n" +) + +#----------------------------------------------------------------------------- +# Trying to solve a bizarre problem when loading shared lib if gdcm is static +# Therefore I disable the test when building SHAREDLIBS +IF(UNIX AND NOT BUILD_SHARED_LIBS) + ADD_LIBRARY(dynmodule MODULE dynmodule.cxx) + TARGET_LINK_LIBRARIES(dynmodule gdcm) + ADD_EXECUTABLE(loadmodule loadmodule.cxx ) + TARGET_LINK_LIBRARIES(loadmodule gdcm -ldl) + ADD_TEST(loadmodule ${CXX_TEST_PATH}/loadmodule) +ENDIF(UNIX AND NOT BUILD_SHARED_LIBS) -ADD_EXECUTABLE(gdcmTests gdcmTests.cxx ${TEST_SOURCES}) -TARGET_LINK_LIBRARIES(gdcmTests gdcm) +#----------------------------------------------------------------------------- +# Do the build against an installed gdcm +SET(GDCM_TEST_INSTALL_LEFT "${CMAKE_INSTALL_PREFIX}") +SET(GDCM_TEST_INSTALL_RIGHT "${GDCM_BINARY_DIR}/InstallTest/Root") +STRING(COMPARE EQUAL "${GDCM_TEST_INSTALL_LEFT}" "${GDCM_TEST_INSTALL_RIGHT}" + GDCM_TEST_INSTALL) +IF(GDCM_TEST_INSTALL) + ADD_TEST(Install + ${CMAKE_CTEST_COMMAND} + # ${GDCM_INSTALL_TEST_CONFIG_TYPE} + --build-and-test ${CMAKE_SOURCE_DIR} ${CMAKE_BINARY_DIR} + --build-generator ${CMAKE_GENERATOR} + --build-project GDCM + --build-makeprogram ${CMAKE_MAKE_PROGRAM} + --build-noclean + --build-target install) +ENDIF(GDCM_TEST_INSTALL)