X-Git-Url: https://git.creatis.insa-lyon.fr/pubgit/?a=blobdiff_plain;f=Testing%2FCMakeLists.txt;h=9735cca39441864788f9bc9753315eb7576bea37;hb=6acf56f6020297bbbc69362aa45ff363531560c4;hp=c273c1d508d4be997e21dce06a6e1c37d55e85a3;hpb=7b90a94638699fec1143d1928f6a6b6f3c769d54;p=gdcm.git diff --git a/Testing/CMakeLists.txt b/Testing/CMakeLists.txt index c273c1d5..9735cca3 100644 --- a/Testing/CMakeLists.txt +++ b/Testing/CMakeLists.txt @@ -1,41 +1,178 @@ -#For later : rewrite this things for more consistencies, such as a 'FOREACH' +# CMakeLists for Testing purpose +# Cxx file that need a file to run should be place aproprietly -LINK_LIBRARIES(gdcm) +SET(CXX_TEST_PATH ${EXECUTABLE_OUTPUT_PATH}) + +SET(GDCM_TESTS ${CXX_TEST_PATH}/gdcmTests) + +# add test that does not require data: +# They usally return if no argument is given +SET(TEST_SOURCES + TestBug.cxx + TestHash.cxx +) + +# add tests that require data +IF (GDCM_DATA_ROOT) + SET(TEST_SOURCES ${TEST_SOURCES} + TestReadWriteReadCompare.cxx # includes generated gdcmDataImages.h + PrintAllDocument.cxx # includes generated gdcmDataImages.h + TestAllReadCompareDicom.cxx # includes generated gdcmDataImages.h + TestAllEntryVerify.cxx # includes generated gdcmDataImages.h + PrintDicomDir.cxx + #TestChangeHeader.cxx + TestDicomDir.cxx # require DICOMDIR + BuildUpDicomDir.cxx # writes a file named "NewDICOMDIR" + makeDicomDir.cxx # writes a file named "NewDICOMDIR" + TestCopyDicom.cxx + ) + # add test that require VTK: + IF(GDCM_VTK) + INCLUDE_DIRECTORIES( + ${GDCM_SOURCE_DIR}/vtk/ + ) + SET(TEST_SOURCES ${TEST_SOURCES} + ShowDicom.cxx + ) + ENDIF(GDCM_VTK) +ENDIF (GDCM_DATA_ROOT) + + + +# include stuff INCLUDE_DIRECTORIES( ${GDCM_SOURCE_DIR}/src/ + ${GDCM_BINARY_DIR}/ ) -SET(PrintHeader_SOURCES - PrintHeader.cxx -) -ADD_EXECUTABLE(PrintHeader ${PrintHeader_SOURCES}) +CREATE_TEST_SOURCELIST(Tests gdcmTests.cxx ${TEST_SOURCES}) +ADD_EXECUTABLE(gdcmTests ${Tests}) +IF(GDCM_VTK) + TARGET_LINK_LIBRARIES(gdcmTests vtkgdcm vtkRendering) +ELSE(GDCM_VTK) + TARGET_LINK_LIBRARIES(gdcmTests gdcm) +ENDIF(GDCM_VTK) -SET(testWrite_SOURCES - testWrite.cxx -) -ADD_EXECUTABLE(testWrite ${testWrite_SOURCES}) +SET (TestsToRun ${Tests}) +REMOVE (TestsToRun gdcmTests.cxx) -SET(testChangeEntete_SOURCES - testChangeEntete.cxx -) -ADD_EXECUTABLE(testChangeEntete ${testChangeEntete_SOURCES}) +# Loop over files and create executables +FOREACH(file ${TEST_SOURCES}) + GET_FILENAME_COMPONENT(name ${file} NAME_WE) +# IF (GDCM_DATA_ROOT) +# ADD_TEST(${name} ${GDCM_TESTS} ${name} +# -D ${GDCM_DATA_ROOT} +# -T ${GDCM_BINARY_DIR}/Testing/Temporary +# -V Baseline/gdcm/${name}.png) +# ELSE (GDCM_DATA_ROOT) + ADD_TEST(${name} ${GDCM_TESTS} ${name}) +# ENDIF (GDCM_DATA_ROOT) +ENDFOREACH(file ${TEST_SOURCES}) -SET(hashtest_SOURCES - hashtest.cxx -) -ADD_EXECUTABLE(hashtest ${hashtest_SOURCES}) +#----------------------------------------------------------------------------- -SET(bug1_SOURCES - bug1.cxx -) -ADD_EXECUTABLE(bug1 ${bug1_SOURCES}) +# We need to test the reading of all dicom images in the gdcmData directory +# First parse this directory and extract all images -SET(pourFindTaggs_SOURCES - pourFindTaggs.cxx -) -ADD_EXECUTABLE(pourFindTaggs ${pourFindTaggs_SOURCES}) +IF(${CMAKE_MAJOR_VERSION}.${CMAKE_MINOR_VERSION} GREATER 1.9) + FILE(GLOB GDCM_DATA_IMAGES_GLOB + "${GDCM_DATA_ROOT}/*.acr" + "${GDCM_DATA_ROOT}/*.dcm" + "${GDCM_DATA_ROOT}/*.nema" + "${GDCM_DATA_ROOT}/*.ima" + ) +ELSE(${CMAKE_MAJOR_VERSION}.${CMAKE_MINOR_VERSION} GREATER 1.9) + # Since there is a bug in cmake 1.8.3, I'll have to do two separate globs + FILE(GLOB GDCM_DATA_IMAGES_GLOB_ACR + "${GDCM_DATA_ROOT}/*.acr" + ) + FILE(GLOB GDCM_DATA_IMAGES_GLOB_DCM + "${GDCM_DATA_ROOT}/*.dcm" + ) + FILE(GLOB GDCM_DATA_IMAGES_GLOB_NEMA + "${GDCM_DATA_ROOT}/*.nema" + ) + FILE(GLOB GDCM_DATA_IMAGES_GLOB_IMA + "${GDCM_DATA_ROOT}/*.ima" + ) + SET(GDCM_DATA_IMAGES_GLOB + ${GDCM_DATA_IMAGES_GLOB_DCM} ${GDCM_DATA_IMAGES_GLOB_ACR} + ${GDCM_DATA_IMAGES_GLOB_NEMA} ${GDCM_DATA_IMAGES_GLOB_IMA}) + #SET(GDCM_DATA_IMAGES_GLOB ${GDCM_DATA_IMAGES_GLOB_ACR}) +ENDIF(${CMAKE_MAJOR_VERSION}.${CMAKE_MINOR_VERSION} GREATER 1.9) -SET(dcm2acr_SOURCES - dcm2acr.cxx -) -ADD_EXECUTABLE(dcm2acr ${dcm2acr_SOURCES}) +# Black list of images known to break lots of readers (efilm, xmedcon ...): +SET(BLACK_LIST + # serial killer (also segfaults vtkgdcmViewer, but NOT PrintFile) + "gdcm-JPEG-LossLessThoravision.dcm" + + # Mathieu: temporarily remove as it kills my gnome session (but not kde) + # JPR: also breaks TestReadWriteReadCompare : Pixel differ (as expanded + # in memory) + "KODAK-12-MONO1-Odd_Terminated_Sequence.dcm" + + #segfaults TestReadWriteReadCompare (same pb as below) --> Fixed + #segfaults ShowDicom + "gdcm-MR-SIEMENS-16-1.acr" + + #Break ShowDicom + "TestReadWriteReadCompare.dcm" + + # see comments in gdcmData ref file TestAllEntryVerifyReference.txt + # JPR 2004/20/09: doesn't break TestReadWriteReadCompare anymore + #"SIEMENS_GBS_III-16-ACR_NEMA_1.acr" + + # Frog 2004/07/29: segfaults TestReadWriteReadCompare (pixels not + # parsed properly): + # JPR 2004/20/09: doesn't break TestReadWriteReadCompare anymore + # "GE_DLX-8-MONO2-Multiframe-Jpeg_Lossless.dcm" + + # JPR 2004/20/09: doesn't break TestReadWriteReadCompare anymore + #"PICKER-16-MONO2-Nested_icon.dcm" + + # JPR 2004/20/09: doesn't break TestReadWriteReadCompare anymore + #"SIEMENS_Sonata-16-MONO2-Value_Multiplicity.dcm" + + # JPR 2004/20/09: doesn't break TestReadWriteReadCompare anymore + # Fails on TestAllReadCompareDicom at the RE-reading stage with message: + # Big trouble : Pixel Element (7fe0,10) NOT found + # The temporary file GDCMDATAHOME/BaselineDicom/SIEMENS_Sonata-12-MONO2-SQ.dcm + # stops after the first binEntry (binary entry) as can be seen with + # " gdcmbin/bin/PrintHeader + # GDCMDATAHOME/BaselineDicom/SIEMENS_Sonata-12-MONO2-SQ.dcm " + # and effectively the pixels are missing (as well as all the entries + # after tag 0029|1010) + # Note: this file was previously known as E00001S03I0015.dcm + #"SIEMENS_Sonata-12-MONO2-SQ.dcm" + + # JPR 2004/20/09: doesn't break TestReadWriteReadCompare anymore + # As of 14/09 this image creates a crash: + # Program received signal SIGSEGV, Segmentation fault. + # 0x4032bc4b in gdcmHeader::GetLUTRGBA (this=0x8149228) + # at /home/malaterre/Creatis/gdcm/src/gdcmHeader.cxx:1170 + # 1170 *a = lutR[i*mult+1]; + "OT-PAL-8-face.dcm" + + # Files which won't break the test suite but whose png dump looks ugly. + # JPR: png looks ugly. so What ? ctest compliant --> un-black listed + # "THERALYS-12-MONO2-Uncompressed-E_Film_Template.dcm" + # "PHILIPS_Gyroscan-8-MONO2-Odd_Sequence.dcm" + # "PHILIPS_Gyroscan-12-MONO2-Jpeg_Lossless.dcm" + "SIEMENS_GBS_III-16-ACR_NEMA_1.acr" + ) + + +# This is a GLOB expression, change it into a list separated with a comma and \n +SET(GDCM_DATA_IMAGES) +FOREACH(filename ${GDCM_DATA_IMAGES_GLOB}) + GET_FILENAME_COMPONENT(filename_temp ${filename} NAME) + STRING(REGEX MATCH ${filename_temp} bad_dicom ${BLACK_LIST}) + IF(NOT bad_dicom) + SET(GDCM_DATA_IMAGES "${GDCM_DATA_IMAGES}\n\"${filename_temp}\",") + ENDIF(NOT bad_dicom) +ENDFOREACH(filename) + +# Populate GDCM_DATA_IMAGES: +FILE(WRITE "${GDCM_BINARY_DIR}/gdcmDataImages.h" + "const char * const gdcmDataImages[] = { ${GDCM_DATA_IMAGES}\n0 };\n" + )