X-Git-Url: https://git.creatis.insa-lyon.fr/pubgit/?a=blobdiff_plain;f=Testing%2FCMakeLists.txt;h=fe7961c84f0c31c6e5231bef7aa04fd7aa2c74ce;hb=f2dd700472606cce1b889e6527ca7ed68a6bbde6;hp=f18303c52bb38acd834e486d5594ac7d06085532;hpb=e6ff7dc295436e9463650ea13ab965ce35ae126c;p=gdcm.git diff --git a/Testing/CMakeLists.txt b/Testing/CMakeLists.txt index f18303c5..fe7961c8 100644 --- a/Testing/CMakeLists.txt +++ b/Testing/CMakeLists.txt @@ -8,44 +8,84 @@ SET(GDCM_TESTS ${CXX_TEST_PATH}/gdcmTests) # add test that does not require data: # They usally return if no argument is given SET(TEST_SOURCES + TestEmpty.cxx + TestUtil.cxx TestBug.cxx TestHash.cxx + TestCommand.cxx TestTS.cxx TestVR.cxx - TestUtil.cxx - TestDicomString.cxx + TestDictGroupName.cxx TestDict.cxx + TestDataEntry.cxx TestWriteSimple.cxx + TestImageSet.cxx + TestDicomDirElement.cxx + TestDicomString.cxx + TestEnumVR.cxx + TestBuildUpDicomDir.cxx # writes a file named "NewDICOMDIR" ) +IF(UNIX OR WIN32) + SET(TEST_SOURCES ${TEST_SOURCES} + TestInline.cxx + ) +ENDIF(UNIX OR WIN32) # add tests that require data IF (GDCM_DATA_ROOT) - SET(TEST_SOURCES ${TEST_SOURCES} - TestReadWriteReadCompare.cxx # includes generated gdcmDataImages.h - PrintAllDocument.cxx # includes generated gdcmDataImages.h - TestAllReadCompareDicom.cxx # includes generated gdcmDataImages.h - TestAllEntryVerify.cxx # includes generated gdcmDataImages.h + SET(TEST_SOURCES ${TEST_SOURCES} + TestFileAccessors.cxx + TestMakeIcon.cxx + TestLoadAllDocumentsNoPrivNoSeq.cxx # includes generated gdcmDataImages.h + #TestLoadAllDocumentsNoShadow.cxx # includes generated gdcmDataImages.h + TestPrintAllDocument.cxx # includes generated gdcmDataImages.h + #TestAllEntryVerify.cxx # includes generated gdcmDataImages.h + #TestAllReadCompareDicom.cxx # includes generated gdcmDataImages.h + TestReadWriteReadCompare.cxx # includes generated gdcmDataImages.h + TestReadWriteJPEGReadCompare.cxx # includes generated gdcmDataImages.h + #TestReadWriteJPEG2000ReadCompare.cxx # includes generated gdcmDataImages.h + + #TestCopyDicom.cxx # includes generated gdcmDataImages.h + # TestCopyRescaleDicom.cxx # includes generated gdcmDataImages.h #TestChangeHeader.cxx - TestCopyDicom.cxx # includes generated gdcmDataImages.h - TestCopyRescaleDicom.cxx # includes generated gdcmDataImages.h - TestDicomDir.cxx # require DICOMDIR - BuildUpDicomDir.cxx # writes a file named "NewDICOMDIR" - makeDicomDir.cxx # writes a file named "NewDICOMDIR" + # TestAnonymize.cxx TestDirList.cxx + TestDicomDir.cxx # require DICOMDIR + + TestMakeDicomDir.cxx # writes a file named "NewDICOMDIR" + TestSerieHelper.cxx # uses gdcmData as a default root directory + TestAllVM.cxx + TestValidate.cxx #Just to have on overviews of oddities ... ) # add test that require VTK: IF(GDCM_VTK) - # Include the VTK library - INCLUDE(${VTK_USE_FILE}) + + IF("${VTK_MAJOR_VERSION}" LESS 4) + MESSAGE(FATAL_ERROR "This VTK version is not supported, you are on your own !") + ELSE("${VTK_MAJOR_VERSION}" LESS 4) + + IF("${VTK_MAJOR_VERSION}" EQUAL 4 AND "${VTK_MINOR_VERSION}" EQUAL 2) + MESSAGE(FATAL_ERROR "This VTK version is not supported, you are on your own !" + "Although gdcm should compile fine. You just need to turn BUILD_TESTING:=OFF") + ENDIF("${VTK_MAJOR_VERSION}" EQUAL 4 AND "${VTK_MINOR_VERSION}" EQUAL 2) + IF("${VTK_MAJOR_VERSION}" EQUAL 4 AND "${VTK_MINOR_VERSION}" EQUAL 4 AND "${VTK_BUILD_VERSION}" LESS 3) + MESSAGE(FATAL_ERROR "This VTK version is not supported, you are on your own !" + "Although gdcm should compile fine. You just need to turn BUILD_TESTING:=OFF") + ENDIF("${VTK_MAJOR_VERSION}" EQUAL 4 AND "${VTK_MINOR_VERSION}" EQUAL 4 AND "${VTK_BUILD_VERSION}" LESS 3) + + # Include the VTK library since we know this is going to work + INCLUDE(${VTK_USE_FILE}) - INCLUDE_DIRECTORIES( - ${GDCM_SOURCE_DIR}/vtk/ + INCLUDE_DIRECTORIES( + ${GDCM_SOURCE_DIR}/vtk ) - SET(TEST_SOURCES ${TEST_SOURCES} - VTKTestRead.cxx - VTKTestReadSeq.cxx - VTKTestWrite.cxx + SET(TEST_SOURCES ${TEST_SOURCES} + VTKTestRead.cxx + VTKTestReadSeq.cxx + VTKTestWrite.cxx + VTKTestWriteSeq.cxx ) + ENDIF("${VTK_MAJOR_VERSION}" LESS 4) ENDIF(GDCM_VTK) ENDIF (GDCM_DATA_ROOT) @@ -53,14 +93,18 @@ ENDIF (GDCM_DATA_ROOT) # include stuff INCLUDE_DIRECTORIES( - ${GDCM_SOURCE_DIR}/src/ - ${GDCM_BINARY_DIR}/ + ${GDCM_SOURCE_DIR}/src + ${GDCM_BINARY_DIR} ) CREATE_TEST_SOURCELIST(Tests gdcmTests.cxx ${TEST_SOURCES}) ADD_EXECUTABLE(gdcmTests ${Tests}) IF(GDCM_VTK) - TARGET_LINK_LIBRARIES(gdcmTests vtkgdcm vtkRendering) + IF(GDCM_DATA_ROOT) + TARGET_LINK_LIBRARIES(gdcmTests vtkgdcm vtkRendering) + ELSE(GDCM_DATA_ROOT) + TARGET_LINK_LIBRARIES(gdcmTests gdcm) + ENDIF(GDCM_DATA_ROOT) ELSE(GDCM_VTK) TARGET_LINK_LIBRARIES(gdcmTests gdcm) ENDIF(GDCM_VTK) @@ -71,14 +115,7 @@ REMOVE (TestsToRun gdcmTests.cxx) # Loop over files and create executables FOREACH(file ${TEST_SOURCES}) GET_FILENAME_COMPONENT(name ${file} NAME_WE) -# IF (GDCM_DATA_ROOT) -# ADD_TEST(${name} ${GDCM_TESTS} ${name} -# -D ${GDCM_DATA_ROOT} -# -T ${GDCM_BINARY_DIR}/Testing/Temporary -# -V Baseline/gdcm/${name}.png) -# ELSE (GDCM_DATA_ROOT) - ADD_TEST(${name} ${GDCM_TESTS} ${name}) -# ENDIF (GDCM_DATA_ROOT) + ADD_TEST(${name} ${GDCM_TESTS} ${name}) ENDFOREACH(file ${TEST_SOURCES}) #----------------------------------------------------------------------------- @@ -86,98 +123,166 @@ ENDFOREACH(file ${TEST_SOURCES}) # We need to test the reading of all dicom images in the gdcmData directory # First parse this directory and extract all images -IF(${CMAKE_MAJOR_VERSION}.${CMAKE_MINOR_VERSION} GREATER 1.9) - FILE(GLOB GDCM_DATA_IMAGES_GLOB - "${GDCM_DATA_ROOT}/*.acr" - "${GDCM_DATA_ROOT}/*.dcm" - "${GDCM_DATA_ROOT}/*.nema" - "${GDCM_DATA_ROOT}/*.ima" - ) - FILE(GLOB GDCM_DATA_SEQ_IMAGES_GLOB - "${GDCM_DATA_ROOT}/*FileSeq0.acr" - "${GDCM_DATA_ROOT}/*FileSeq0.dcm" - "${GDCM_DATA_ROOT}/*FileSeq0.nema" - "${GDCM_DATA_ROOT}/*FileSeq0.ima" - ) -ELSE(${CMAKE_MAJOR_VERSION}.${CMAKE_MINOR_VERSION} GREATER 1.9) - # Since there is a bug in cmake 1.8.3, I'll have to do two separate globs - FILE(GLOB GDCM_DATA_IMAGES_GLOB_ACR - "${GDCM_DATA_ROOT}/*.acr" - ) - FILE(GLOB GDCM_DATA_IMAGES_GLOB_DCM - "${GDCM_DATA_ROOT}/*.dcm" - ) - FILE(GLOB GDCM_DATA_IMAGES_GLOB_NEMA - "${GDCM_DATA_ROOT}/*.nema" - ) - FILE(GLOB GDCM_DATA_IMAGES_GLOB_IMA - "${GDCM_DATA_ROOT}/*.ima" - ) - SET(GDCM_DATA_IMAGES_GLOB - ${GDCM_DATA_IMAGES_GLOB_DCM} ${GDCM_DATA_IMAGES_GLOB_ACR} - ${GDCM_DATA_IMAGES_GLOB_NEMA} ${GDCM_DATA_IMAGES_GLOB_IMA}) - - FILE(GLOB GDCM_DATA_SEQ_IMAGES_GLOB_ACR - "${GDCM_DATA_ROOT}/*FileSeq0.acr" - ) - FILE(GLOB GDCM_DATA_SEQ_IMAGES_GLOB_DCM - "${GDCM_DATA_ROOT}/*FileSeq0.dcm" - ) - FILE(GLOB GDCM_DATA_SEQ_IMAGES_GLOB_NEMA - "${GDCM_DATA_ROOT}/*FileSeq0.nema" - ) - FILE(GLOB GDCM_DATA_SEQ_IMAGES_GLOB_IMA - "${GDCM_DATA_ROOT}/*FileSeq0.ima" - ) - SET(GDCM_DATA_SEQ_IMAGES_GLOB - ${GDCM_DATA_SEQ_IMAGES_GLOB_DCM} ${GDCM_DATA_SEQ_IMAGES_GLOB_ACR} - ${GDCM_DATA_SEQ_IMAGES_GLOB_NEMA} ${GDCM_DATA_SEQ_IMAGES_GLOB_IMA}) -ENDIF(${CMAKE_MAJOR_VERSION}.${CMAKE_MINOR_VERSION} GREATER 1.9) +FILE(GLOB GDCM_DATA_IMAGES_GLOB + "${GDCM_DATA_ROOT}/*.acr" + "${GDCM_DATA_ROOT}/*.dcm" + "${GDCM_DATA_ROOT}/*.nema" + "${GDCM_DATA_ROOT}/*.ima" + ) + +FILE(GLOB GDCM_DATA_EXTRA_IMAGES_GLOB + "${GDCM_DATA_EXTRA_ROOT}/gdcmSampleData/images_of_interest/*.dcm" + ) +#MESSAGE(${GDCM_DATA_EXTRA_IMAGES_GLOB}) # Black list of images known to break lots of readers (efilm, xmedcon ...): SET(BLACK_LIST - # serial killer (also segfaults vtkgdcmViewer, but NOT PrintFile) - #"gdcm-JPEG-LossLessThoravision.dcm" - - # Mathieu: temporarily remove as it kills my gnome session (but not kde) - # JPR: also breaks TestReadWriteReadCompare : Pixel differ (as expanded - # in memory) - #"KODAK-12-MONO1-Odd_Terminated_Sequence.dcm" - # Multiframe Papyrus format image - # Just to remember this format exist, and is gdcm::Header compliant - # (NOT gdcm::File ...) + # Just to remember this format exists, and is gdcm::File compliant + # (NOT gdcm::FileHelper ...) # any contribution is welcome - "PET-cardio-Multiframe-Papyrus.dcm" + "PET-cardio-Multiframe-Papyrus.dcm" + # From David Clunie's Compresion Dataset + "D_CLUNIE_CT1_JLSN.dcm" + "D_CLUNIE_CT1_JLSL.dcm" + #Not a Dicom Image, but a RT Object + "RS2.16.124.113534.2.3.5.0.120040728.21342.353.12747_anonimized.dcm" + #Dicom MPEG image + "ETIAM_video_002.dcm" + #Something stupid occured in the code for LibIDO images. + #I Black list them for a while. JP + #"gdcm-ACR-LibIDO.acr" + "LIBIDO-24-ACR_NEMA-Rectangle.dcm" + #16 Bits per pixel images with LUT 16 Bits. + #I wait to be 100% sure before releasing them. JP + "rle16sti.dcm" + "rle16loo.dcm" + # Jasper cannot handle this image, only kakadu so far, unless you patch jasper + # but then it breaks other images... + "CT_Phillips_JPEG2K_Decompr_Problem.dcm" + + #RTDOSE, 32 bits image : cannot be compressed + #"RTDOSE.dcm" + + # + # ------------ + # + #Still cause troubles (see the .README.txt file for more details) + "MR_Philips_Intera_in_SQ_2001_e05f_item_wrong_lgt_use_NOSHADOWSEQ.dcm" + "MR_Philips_Intera_PrivateSequenceExplicitVR.dcm" + #The 2 previous images are identical ! + #--> Replaced by more significant name + "MR_Philips_Intera_PrivateSequenceExplicitVR_in_SQ_2001_e05f_item_wrong_lgt_use_NOSHADOWSEQ.dcm" + + #hexedit shows something *very* strange around offset 0x76e ! + #the images looks *over*corrupted (on disc, not from the manufacturer!) + "MR_Philips_Intera_PrivateSequenceImplicitVR.dcm" + + # Seems this one hangs on 64 bits processors ?!? + # I blacklist it until the pb is solved. + # (to get some more green on the Dasboards) + "MR_Philips-Intera_BreaksNOSHADOW.dcm" + + # No way we'll ever be able to read that... + "ELSCINT1_LOSSLESS_RICE.dcm" + + # Are we even be able to support our own bugs ? + "SIEMENS_MAGNETOM-12-MONO2-GDCM12-VRUN.dcm" + "SIEMENS_GBS_III-16-ACR_NEMA_1-ULis2Bytes.dcm" + "SIEMENS_ImageLocationUN.dcm" + "TheralysGDCM120Bug.dcm" + "IM-0001-0066.dcm" + "DMCPACS_ExplicitImplicit_BogusIOP.dcm" + "MR_ELSCINT1_00e1_1042_SQ_feff_00e0_Item.dcm" + "MR_Spectroscopy_SIEMENS_OF.dcm" + "ELSCINT1_PMSCT_RLE1.dcm" ) +# Create a specific list of dicom files that we know are part of a sequence +SET(SEQ_LIST + "SIEMENS_MAGNETOM-12-MONO2-FileSeq[0-9].dcm" + ) + +# Add a special test that requires dciodvfy from dicom3tools +INCLUDE(${GDCM_SOURCE_DIR}/CMake/FindDicom3Tools.cmake) + # This is a GLOB expression, change it into a list separated with a comma and \n SET(GDCM_DATA_IMAGES) +SET(GDCM_DATA_SEQ_IMAGES) FOREACH(filename ${GDCM_DATA_IMAGES_GLOB}) GET_FILENAME_COMPONENT(filename_temp ${filename} NAME) + IF(DCIODVFY_FOUND) + #ADD_TEST("DCIODVFY-INPUT-${filename_temp}" "${DCIODVFY_EXECUTABLE}" "${filename}") + #ADD_TEST("DCIODVFY-OUTPUT-${filename_temp}" "${DCIODVFY_EXECUTABLE}" "${GDCM_DATA_ROOT}/BaselineDicom/${filename_temp}") + ENDIF(DCIODVFY_FOUND) STRING(REGEX MATCH ${filename_temp} bad_dicom ${BLACK_LIST}) IF(NOT bad_dicom) SET(GDCM_DATA_IMAGES "${GDCM_DATA_IMAGES}\n\"${filename_temp}\",") + # SEQ_LIST is a regular expression: + STRING(REGEX MATCH ${SEQ_LIST} is_seq ${filename_temp}) + IF(is_seq) + SET(GDCM_DATA_SEQ_IMAGES "${GDCM_DATA_SEQ_IMAGES}\n\"${filename_temp}\",") + ENDIF(is_seq) ENDIF(NOT bad_dicom) ENDFOREACH(filename) -SET(GDCM_DATA_SEQ_IMAGES) -FOREACH(filename ${GDCM_DATA_SEQ_IMAGES_GLOB}) +# Paranoid / dcmdump +IF(GDCM_DCMTK_CHECK) +FOREACH(filename ${GDCM_DATA_IMAGES_GLOB} ${GDCM_DATA_EXTRA_IMAGES_GLOB}) GET_FILENAME_COMPONENT(filename_temp ${filename} NAME) STRING(REGEX MATCH ${filename_temp} bad_dicom ${BLACK_LIST}) IF(NOT bad_dicom) - STRING(REGEX REPLACE "(.*)FileSeq0(.*)" "\\1FileSeq%d\\2" filename_temp2 ${filename_temp}) - - SET(GDCM_DATA_SEQ_IMAGES "${GDCM_DATA_SEQ_IMAGES}\n\"${filename_temp2}\",") + IF(BUILD_EXAMPLES) + FOREACH(mode a d x) #r + FOREACH(opt "" monochrome1 noshadowseq noshadow noseq rgb) + ADD_TEST(ReWrite-${mode}-${opt}-${filename_temp} ${EXECUTABLE_OUTPUT_PATH}/ReWrite filein=${filename} fileout=${GDCM_BINARY_DIR}/${mode}-${opt}-${filename_temp} mode=${mode} ${opt}) + ADD_TEST(dcmdump-${mode}-${opt}-${filename_temp} /usr/bin/dcmdump -E -dc +ae ${GDCM_BINARY_DIR}/${mode}-${opt}-${filename_temp}) + #ADD_TEST(ReWrite-${mode}-${opt}-${filename_temp}-bis ${EXECUTABLE_OUTPUT_PATH}/ReWrite filein=${GDCM_BINARY_DIR}/${mode}-${opt}-${filename_temp} fileout=${GDCM_BINARY_DIR}/reference.dcm mode=${mode} ${opt}) + #ADD_TEST(diff-${mode}-${opt}-${filename_temp} /usr/bin/diff ${GDCM_BINARY_DIR}/${mode}-${opt}-${filename_temp} ${GDCM_BINARY_DIR}/reference.dcm) + ENDFOREACH(opt) + ENDFOREACH(mode) + ENDIF(BUILD_EXAMPLES) ENDIF(NOT bad_dicom) ENDFOREACH(filename) +ENDIF(GDCM_DCMTK_CHECK) # Populate GDCM_DATA_IMAGES: FILE(WRITE "${GDCM_BINARY_DIR}/gdcmDataImages.h" "const char * const gdcmDataImages[] = { ${GDCM_DATA_IMAGES}\n0 };\n" - ) +) # Populate GDCM_DATA_SEQ_IMAGES: FILE(WRITE "${GDCM_BINARY_DIR}/gdcmDataSeqImages.h" "const char * const gdcmDataSeqImages[] = { ${GDCM_DATA_SEQ_IMAGES}\n0 };\n" - ) +) + +#----------------------------------------------------------------------------- +# Trying to solve a bizarre problem when loading shared lib if gdcm is static +# Therefore I disable the test when building SHAREDLIBS +IF(UNIX AND NOT BUILD_SHARED_LIBS) + ADD_LIBRARY(dynmodule MODULE dynmodule.cxx) + TARGET_LINK_LIBRARIES(dynmodule gdcm) + ADD_EXECUTABLE(loadmodule loadmodule.cxx ) + TARGET_LINK_LIBRARIES(loadmodule gdcm -ldl) + ADD_TEST(loadmodule ${CXX_TEST_PATH}/loadmodule) +ENDIF(UNIX AND NOT BUILD_SHARED_LIBS) + + +#----------------------------------------------------------------------------- +# Do the build against an installed gdcm +SET(GDCM_TEST_INSTALL_LEFT "${CMAKE_INSTALL_PREFIX}") +SET(GDCM_TEST_INSTALL_RIGHT "${GDCM_BINARY_DIR}/InstallTest/Root") +STRING(COMPARE EQUAL "${GDCM_TEST_INSTALL_LEFT}" "${GDCM_TEST_INSTALL_RIGHT}" + GDCM_TEST_INSTALL) +IF(GDCM_TEST_INSTALL) + ADD_TEST(Install + ${CMAKE_CTEST_COMMAND} + # ${GDCM_INSTALL_TEST_CONFIG_TYPE} + --build-and-test ${CMAKE_SOURCE_DIR} ${CMAKE_BINARY_DIR} + --build-generator ${CMAKE_GENERATOR} + --build-project GDCM + --build-makeprogram ${CMAKE_MAKE_PROGRAM} + --build-noclean + --build-target install) +ENDIF(GDCM_TEST_INSTALL) +