X-Git-Url: https://git.creatis.insa-lyon.fr/pubgit/?a=blobdiff_plain;f=appli%2Fexamples%2Fexample_ImageAlgorithmRegionGrow_MultipleThresholds.cxx;h=e9b06cc7238e475e0ac725120740153abc752cde;hb=58beec8ea1d7265ffa6a8842f6a56fc3c0706524;hp=ff821034776c889ffcd7cf53accbb754a63c90cb;hpb=972dd44060dfff40ba3daab899c6365445f6de7e;p=FrontAlgorithms.git

diff --git a/appli/examples/example_ImageAlgorithmRegionGrow_MultipleThresholds.cxx b/appli/examples/example_ImageAlgorithmRegionGrow_MultipleThresholds.cxx
index ff82103..e9b06cc 100644
--- a/appli/examples/example_ImageAlgorithmRegionGrow_MultipleThresholds.cxx
+++ b/appli/examples/example_ImageAlgorithmRegionGrow_MultipleThresholds.cxx
@@ -1,3 +1,4 @@
+#include <ctime>
 #include <iostream>
 #include <limits>
 #include <set>
@@ -5,9 +6,11 @@
 
 #include <itkImage.h>
 #include <itkImageFileReader.h>
+#include <itkImageFileWriter.h>
 #include <itkImageToVTKImageFilter.h>
 
 #include <vtkImageActor.h>
+#include <vtkImageMarchingCubes.h>
 #include <vtkProperty.h>
 #include <vtkRenderer.h>
 #include <vtkRenderWindow.h>
@@ -27,6 +30,7 @@ typedef itk::Image< TPixel, Dim >  TImage;
 typedef itk::ImageToVTKImageFilter< TImage > TVTKImage;
 
 typedef itk::ImageFileReader< TImage >   TImageReader;
+typedef itk::ImageFileWriter< TImage >   TImageWriter;
 
 typedef
 fpa::Image::RegionGrowWithMultipleThresholds< TImage >
@@ -38,18 +42,24 @@ TObserver;
 // -------------------------------------------------------------------------
 int main( int argc, char* argv[] )
 {
-  if( argc < 5 )
+  if( argc < 6 )
   {
     std::cerr
       << "Usage: " << argv[ 0 ]
-      << " input_image thr_0 thr_1 n_samples" << std::endl;
+      << " input_image thr_0 thr_1 step output_image"
+      << " visual_debug"
+      << std::endl;
     return( 1 );
 
   } // fi
   std::string input_image_fn = argv[ 1 ];
   TPixel thr_0 = TPixel( std::atof( argv[ 2 ] ) );
   TPixel thr_1 = TPixel( std::atof( argv[ 3 ] ) );
-  unsigned int n_samples = std::atoi( argv[ 4 ] );
+  unsigned int step = std::atoi( argv[ 4 ] );
+  std::string output_image_fn = argv[ 5 ];
+  bool visual_debug = false;
+  if( argc > 6 )
+    visual_debug = ( std::atoi( argv[ 6 ] ) == 1 );
   
   // Read image
   TImageReader::Pointer input_image_reader = TImageReader::New( );
@@ -93,23 +103,63 @@ int main( int argc, char* argv[] )
   TImage::IndexType seed_idx;
   input_image->TransformPhysicalPointToIndex( seed_pnt, seed_idx );
 
-  // Configure observer
-  TObserver::Pointer obs = TObserver::New( );
-  obs->SetImage( input_image, view.GetWindow( ) );
-
   // Configure algorithm
   TFrontAlgorithm::Pointer algorithm = TFrontAlgorithm::New( );
-  algorithm->AddThresholds( thr_0, thr_1, n_samples );
+  algorithm->AddThresholds( thr_0, thr_1, step );
   algorithm->AddSeed( seed_idx, 0 );
-  algorithm->AddObserver( itk::AnyEvent( ), obs );
-  algorithm->ThrowEventsOn( );
   algorithm->SetInput( input_image );
   algorithm->SetNeighborhoodOrder( 1 );
-  algorithm->SetDerivativeThreshold( double( 3 ) );
+  algorithm->SetDifferenceThreshold( double( 3 ) );
+
+  if( visual_debug )
+  {
+    // Configure observer
+    TObserver::Pointer obs = TObserver::New( );
+    obs->SetImage( input_image, view.GetWindow( ) );
+    algorithm->AddObserver( itk::AnyEvent( ), obs );
+    algorithm->ThrowEventsOn( );
+  }
+  else
+    algorithm->ThrowEventsOff( );
+
+  std::clock_t start = std::clock( );
   algorithm->Update( );
+  std::clock_t end = std::clock( );
+  double seconds = double( end - start ) / double( CLOCKS_PER_SEC );
+  std::cout << "Execution time = " << seconds << std::endl;
+
+  // Show result
+  TVTKImage::Pointer output_image_vtk = TVTKImage::New( );
+  output_image_vtk->SetInput( algorithm->GetOutput( ) );
+  output_image_vtk->Update( );
+
+  vtkSmartPointer< vtkImageMarchingCubes > mc =
+    vtkSmartPointer< vtkImageMarchingCubes >::New( );
+  mc->SetInputData( output_image_vtk->GetOutput( ) );
+  mc->SetValue(
+    0,
+    double( algorithm->GetInsideValue( ) ) * double( 0.95 )
+    );
+  mc->Update( );
 
   // Let some interaction and close program
+  view.AddPolyData( mc->GetOutput( ), 0.1, 0.6, 0.8, 0.5 );
   view.Start( );
+
+  // Write resulting image
+  TImageWriter::Pointer output_image_writer = TImageWriter::New( );
+  output_image_writer->SetInput( algorithm->GetOutput( ) );
+  output_image_writer->SetFileName( output_image_fn );
+  try
+  {
+    output_image_writer->Update( );
+  }
+  catch( itk::ExceptionObject& err )
+  {
+    std::cerr << "Error caught: " << err << std::endl;
+    return( 1 );
+
+  } // yrt
   return( 0 );
 }