X-Git-Url: https://git.creatis.insa-lyon.fr/pubgit/?a=blobdiff_plain;f=bbtk%2Fsrc%2FbbmaracasvisuAxeVolume.cxx;h=5cb228ef9c0c2a0ff2f333498d4e757e3381d632;hb=3283472f764535492122c3b2ade020a749c1bd2a;hp=bee0a9a0792a6244fffe56ff7872b4ba8a713f37;hpb=1e114d2e85dfcbb93b774b5aa43bc96a2293c4e7;p=creaMaracasVisu.git diff --git a/bbtk/src/bbmaracasvisuAxeVolume.cxx b/bbtk/src/bbmaracasvisuAxeVolume.cxx index bee0a9a..5cb228e 100644 --- a/bbtk/src/bbmaracasvisuAxeVolume.cxx +++ b/bbtk/src/bbmaracasvisuAxeVolume.cxx @@ -1,10 +1,69 @@ +/*# --------------------------------------------------------------------- +# +# Copyright (c) CREATIS (Centre de Recherche en Acquisition et Traitement de l'Image +# pour la Sant�) +# Authors : Eduardo Davila, Frederic Cervenansky, Claire Mouton +# Previous Authors : Laurent Guigues, Jean-Pierre Roux +# CreaTools website : www.creatis.insa-lyon.fr/site/fr/creatools_accueil +# +# This software is governed by the CeCILL-B license under French law and +# abiding by the rules of distribution of free software. You can use, +# modify and/ or redistribute the software under the terms of the CeCILL-B +# license as circulated by CEA, CNRS and INRIA at the following URL +# http://www.cecill.info/licences/Licence_CeCILL-B_V1-en.html +# or in the file LICENSE.txt. +# +# As a counterpart to the access to the source code and rights to copy, +# modify and redistribute granted by the license, users are provided only +# with a limited warranty and the software's author, the holder of the +# economic rights, and the successive licensors have only limited +# liability. +# +# The fact that you are presently reading this means that you have had +# knowledge of the CeCILL-B license and that you accept its terms. +# ------------------------------------------------------------------------ */ + #include "bbmaracasvisuAxeVolume.h" #include "bbcreaMaracasVisuPackage.h" + namespace bbcreaMaracasVisu { + BBTK_ADD_BLACK_BOX_TO_PACKAGE(creaMaracasVisu,AxeVolume) BBTK_BLACK_BOX_IMPLEMENTATION(AxeVolume,bbtk::AtomicBlackBox); + +int AxeVolume::GetTypeFormat( std::string formatStr , vtkImageData* image ) +{ + int outputformat = VTK_UNSIGNED_CHAR; + if (formatStr=="SAME") + { + if (image!=NULL) outputformat = image->GetScalarType(); + } + else if (formatStr=="VTK_BIT") outputformat = VTK_BIT; // 1 + else if (formatStr=="VTK_CHAR") outputformat = VTK_CHAR; // 2 + else if (formatStr=="VTK_SIGNED_CHAR") outputformat = VTK_SIGNED_CHAR; // 15 + else if (formatStr=="VTK_UNSIGNED_CHAR") outputformat = VTK_UNSIGNED_CHAR; // 3 + else if (formatStr=="VTK_SHORT") outputformat = VTK_SHORT; // 4 + else if (formatStr=="VTK_UNSIGNED_SHORT") outputformat = VTK_UNSIGNED_SHORT; // 5 + else if (formatStr=="VTK_INT") outputformat = VTK_INT; // 6 + else if (formatStr=="VTK_UNSIGNED_INT") outputformat = VTK_UNSIGNED_INT; // 7 + else if (formatStr=="VTK_LONG") outputformat = VTK_LONG; // 8 + else if (formatStr=="VTK_UNSIGNED_LONG") outputformat = VTK_UNSIGNED_LONG; // 9 + else if (formatStr=="VTK_FLOAT") outputformat = VTK_FLOAT; // 10 + else if (formatStr=="VTK_DOUBLE") outputformat = VTK_DOUBLE; // 11 + else if (formatStr=="MET_CHAR") outputformat = VTK_CHAR; // 2 + else if (formatStr=="MET_UCHAR") outputformat = VTK_UNSIGNED_CHAR; // 3 + else if (formatStr=="MET_SHORT") outputformat = VTK_SHORT; // 4 + else if (formatStr=="MET_USHORT") outputformat = VTK_UNSIGNED_SHORT; // 5 + else if (formatStr=="MET_SHORT") outputformat = VTK_SHORT; // 4 + else if (formatStr=="MET_FLOAT") outputformat = VTK_FLOAT; // 10 + else if (formatStr=="MET_DOUBLE") outputformat = VTK_DOUBLE; // 11 + + return outputformat; +} + + void AxeVolume::Process() { if ( mimage!=NULL ) @@ -14,28 +73,36 @@ void AxeVolume::Process() int ext[6]; bbGetInputIn()->GetExtent(ext); - int sizeX=ext[1]-ext[0]; - int sizeY=ext[3]-ext[2]; - int sizeZ=ext[5]-ext[4]; - - mimage = vtkImageData::New(); - mimage->SetDimensions(sizeX,sizeY,sizeZ); - mimage->SetOrigin(0,0,0); - mimage->SetExtent( 0 , sizeX-1 , 0 , sizeY-1 , 0, sizeZ-1 ); - mimage->SetWholeExtent( 0 , sizeX-1 , 0 , sizeY-1 , 0, sizeZ-1 ); - mimage->SetScalarTypeToUnsignedShort(); - mimage->AllocateScalars(); + int sizeX=ext[1]-ext[0]+1; + int sizeY=ext[3]-ext[2]+1; + int sizeZ=ext[5]-ext[4]+1; + + double spc[3]; + bbGetInputIn()->GetSpacing(spc); + double invSpc[3]; + invSpc[0] = 1/spc[0]; + invSpc[1] = 1/spc[1]; + invSpc[2] = 1/spc[2]; + int outputformat = GetTypeFormat( bbGetInputOutputFormat() , bbGetInputIn() ); + mimage = vtkImageData::New(); + mimage->SetSpacing(bbGetInputIn()->GetSpacing()); + mimage->SetDimensions(bbGetInputIn()->GetDimensions()); + mimage->SetExtent(bbGetInputIn()->GetExtent()); + mimage->SetOrigin(bbGetInputIn()->GetOrigin()); + mimage->SetScalarType( outputformat ); + mimage->AllocateScalars(); int i,j,k; - int sizeLstPointR = bbGetInputlstPointR().size(); - int iAxe,sizeAxe=bbGetInputlstPointX().size(); + int sizeLstPointR = bbGetInputlstPointR().size(); + int iAxe,sizeAxe = bbGetInputlstPointX().size(); double rx,ry,rz; double r,rr; unsigned short *p; - int sizeImage = sizeX*sizeY*sizeZ; - double px,py,pz,px1,py1,pz1,px2,py2,pz2; - + int sizeImage = sizeX*sizeY*sizeZ; + double px,py,pz; + double px1,py1,pz1; + double px2,py2,pz2; // Clean image p = (unsigned short*)mimage->GetScalarPointer (0, 0, 0); for ( i=0 ; i=1) + { + r = bbGetInputlstPointR()[ bbGetInputlstPointR().size()-1 ] * invSpc[0]; + } else { + r = 1; + } } - px = bbGetInputlstPointX()[iAxe]; - py = bbGetInputlstPointY()[iAxe]; - pz = bbGetInputlstPointZ()[iAxe]; - printf("AxeVolume::Process %d -> %f, %f, %f\n",iAxe, px,py,pz); + px = bbGetInputlstPointX()[iAxe] * invSpc[0]; + py = bbGetInputlstPointY()[iAxe] * invSpc[1]; + pz = bbGetInputlstPointZ()[iAxe] * invSpc[2]; px1 = px - r; py1 = py - r; pz1 = pz - r; px2 = px + r; py2 = py + r; pz2 = pz + r; + rr=r*r; - for ( i=px1 ; i<=px2 ; i++ ) + for ( i=px1 ; i<=px2 ; i++ ) { - for ( j=py1 ; j=0) && (i=0) && (j=0) && (k=0) && (i=0) && (j=0) && (kGetScalarPointer (i, j, k); +// if (*p==0) + if ( mimage->GetScalarComponentAsDouble(i,j,k,0)==0 ) { - p = (unsigned short*)mimage->GetScalarPointer (i, j, k); - *p=255; - } - } // inside point + rz = k - pz; + rz = rz*rz; + if ( rx + ry + rz <= rr ) + { +// *p=255; + mimage->SetScalarComponentFromDouble (i,j,k,0, bbGetInputValue() ); + } + } // *p==0 + } // if inside point } //for k } //for j } //for i } // for iAxe - bbSetOutputOut( mimage ); + bbSetOutputOut( mimage ); } - //----------------------------------------------------------------- + //----------------------------------------------------------------- void AxeVolume::bbUserSetDefaultValues() { mimage=NULL; + bbSetInputOutputFormat("SAME"); + bbSetInputValue(255); } - - //----------------------------------------------------------------- + + //----------------------------------------------------------------- void AxeVolume::bbUserInitializeProcessing() { } - - //----------------------------------------------------------------- + + //----------------------------------------------------------------- void AxeVolume::bbUserFinalizeProcessing() { } - - //----------------------------------------------------------------- - + + //----------------------------------------------------------------- + } // EO namespace bbcreaMaracasVisu