X-Git-Url: https://git.creatis.insa-lyon.fr/pubgit/?a=blobdiff_plain;f=bbtk_Slicer_PKG%2Fsrc%2FbbSlicerDicomtoNrrdConverter.h;fp=bbtk_Slicer_PKG%2Fsrc%2FbbSlicerDicomtoNrrdConverter.h;h=808c738e7fae572ef3a52f6f4bfa5172222616c8;hb=cd590ce5fff20d69c7060340235a35e9c2a9ef86;hp=0000000000000000000000000000000000000000;hpb=b7a0497a4afc48d5230c279aeab20eb756e4427b;p=creaCLI.git

diff --git a/bbtk_Slicer_PKG/src/bbSlicerDicomtoNrrdConverter.h b/bbtk_Slicer_PKG/src/bbSlicerDicomtoNrrdConverter.h
new file mode 100644
index 0000000..808c738
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+++ b/bbtk_Slicer_PKG/src/bbSlicerDicomtoNrrdConverter.h
@@ -0,0 +1,70 @@
+#ifndef __bbSlicerDicomtoNrrdConverter_h_INCLUDED__
+#define __bbSlicerDicomtoNrrdConverter_h_INCLUDED__
+
+#include "bbSlicer_EXPORT.h"
+#include "bbtkAtomicBlackBox.h"
+
+#include <vector>
+#include <cstdlib>
+#include <dlfcn.h>
+#include <sstream>
+#include <fstream>
+#include <iostream>
+
+#include <ModuleDescriptionUtilities.h>
+#include <ModuleDescriptionParser.h>
+#include <ModuleParameterGroup.h>
+#include <ModuleDescription.h>
+#include <ModuleParameter.h>
+
+#include "CreationTool.h"
+
+namespace bbSlicer {
+
+    class bbSlicer_EXPORT DicomtoNrrdConverter
+    :
+    public bbtk::AtomicBlackBox {
+        BBTK_BLACK_BOX_INTERFACE ( DicomtoNrrdConverter , bbtk::AtomicBlackBox ) ;
+
+        // GENERATED ARGS        
+        
+BBTK_DECLARE_INPUT ( inputDicomDirectory , std::string );
+BBTK_DECLARE_INPUT ( outputDirectory , std::string );
+BBTK_DECLARE_INPUT ( outputVolume , std::string );
+BBTK_DECLARE_INPUT ( smallGradientThreshold , double );
+BBTK_DECLARE_INPUT ( writeProtocolGradientsFile , bool );
+BBTK_DECLARE_INPUT ( useIdentityMeaseurementFrame , bool );
+BBTK_DECLARE_INPUT ( useBMatrixGradientDirections , bool );
+
+        // EO GENERATED ARGS
+
+        BBTK_PROCESS ( Process ) ;
+        void Process ( ) ;
+    private:
+        void execute ( std::string lib , int _argc , char * _argv[] ) ;
+    } ;
+
+    BBTK_BEGIN_DESCRIBE_BLACK_BOX ( DicomtoNrrdConverter , bbtk::AtomicBlackBox ) ;
+    BBTK_NAME ( "DicomtoNrrdConverter" ) ;
+    BBTK_AUTHOR ( "Xiaodong Tao" ) ;
+    BBTK_DESCRIPTION ( "Converts diffusion weighted MR images in dicom series into Nrrd format for analysis in Slicer. This program has been tested on only a limited subset of DTI dicom formats available from Siemens, GE, and Phillips scanners. Work in progress to support dicom multi-frame data. The program parses dicom header to extract necessary information about measurement frame, diffusion weighting directions, b-values, etc, and write out a nrrd image. For non-diffusion weighted dicom images, it loads in an entire dicom series and writes out a single dicom volume in a .nhdr/.raw pair." ) ;
+    BBTK_CATEGORY ( "Converters" ) ;
+
+    // GENERATED DESCRPTION
+    
+BBTK_INPUT(DicomtoNrrdConverter , inputDicomDirectory , "inputDicomDirectory" , std::string, "");
+BBTK_INPUT(DicomtoNrrdConverter , outputDirectory , "outputDirectory" , std::string, "");
+BBTK_INPUT(DicomtoNrrdConverter , outputVolume , "outputVolume" , std::string, "");
+BBTK_INPUT(DicomtoNrrdConverter , smallGradientThreshold , "smallGradientThreshold" , double, "");
+BBTK_INPUT(DicomtoNrrdConverter , writeProtocolGradientsFile , "writeProtocolGradientsFile" , bool, "");
+BBTK_INPUT(DicomtoNrrdConverter , useIdentityMeaseurementFrame , "useIdentityMeaseurementFrame" , bool, "");
+BBTK_INPUT(DicomtoNrrdConverter , useBMatrixGradientDirections , "useBMatrixGradientDirections" , bool, "");
+
+    // EO GENERATED DESCRIPTION
+
+    BBTK_END_DESCRIBE_BLACK_BOX ( DicomtoNrrdConverter ) ;
+}
+
+#endif // __bbSlicerDicomtoNrrdConverter_h_INCLUDED__
+
+